Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 7

Results: 45

Obituary: Hans Gross.

Published in:: Nucleic Acids Research, 2020, v. 48, n. 7, p. 3397, doi. 10.1093/nar/gkaa152
Publication type:: Article

The ligation of pol β mismatch insertion products governs the formation of promutagenic base excision DNA repair intermediates.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3708, doi. 10.1093/nar/gkaa151

By:

Çağlayan, Melike

Publication type:

Article

Mutation signatures specific to DNA alkylating agents in yeast and cancers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3692, doi. 10.1093/nar/gkaa150

By:

Saini, Natalie;
Sterling, Joan F;
Sakofsky, Cynthia J;
Giacobone, Camille K;
Klimczak, Leszek J;
Burkholder, Adam B;
Malc, Ewa P;
Mieczkowski, Piotr A;
Gordenin, Dmitry A

Publication type:

Article

Crystal structure of an Escherichia coli Hfq Core (residues 2–69)–DNA complex reveals multifunctional nucleic acid binding sites.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3987, doi. 10.1093/nar/gkaa149

By:

Orans, Jillian;
Kovach, Alexander R;
Hoff, Kirsten E;
Horstmann, Nicola M;
Brennan, Richard G

Publication type:

Article

Atm deficiency in the DNA polymerase β null cerebellum results in cerebellar ataxia and Itpr1 reduction associated with alteration of cytosine methylation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3678, doi. 10.1093/nar/gkaa140

By:

Kim, Jusik;
Kim, Keeeun;
Mo, Jung-soon;
Lee, Youngsoo

Publication type:

Article

The acute myeloid leukemia variant DNMT3A Arg882His is a DNMT3B-like enzyme.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3761, doi. 10.1093/nar/gkaa139

By:

Norvil, Allison B;
AlAbdi, Lama;
Liu, Bigang;
Tu, Yu Han;
Forstoffer, Nicole E;
Michie, Amie R;
Chen, Taiping;
Gowher, Humaira

Publication type:

Article

SV40 T antigen interactions with ssDNA and replication protein A: a regulatory role of T antigen monomers in lagging strand DNA replication.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3657, doi. 10.1093/nar/gkaa138

By:

Onwubiko, Nichodemus O;
Borst, Angela;
Diaz, Suraya A;
Passkowski, Katharina;
Scheffel, Felicia;
Tessmer, Ingrid;
Nasheuer, Heinz P

Publication type:

Article

Translational read-through promotes aggregation and shapes stop codon identity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3747, doi. 10.1093/nar/gkaa136

By:

Kramarski, Lior;
Arbely, Eyal

Publication type:

Article

Monitoring the spatio-temporal organization and dynamics of the genome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3423, doi. 10.1093/nar/gkaa135

By:

Shaban, Haitham A;
Seeber, Andrew

Publication type:

Article

Splitting aptamers and nucleic acid enzymes for the development of advanced biosensors.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3400, doi. 10.1093/nar/gkaa132

By:

Debiais, Mégane;
Lelievre, Amandine;
Smietana, Michael;
Müller, Sabine

Publication type:

Article

Acetylation of MORC2 by NAT10 regulates cell-cycle checkpoint control and resistance to DNA-damaging chemotherapy and radiotherapy in breast cancer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3638, doi. 10.1093/nar/gkaa130

By:

Liu, Hong-Yi;
Liu, Ying-Ying;
Yang, Fan;
Zhang, Lin;
Zhang, Fang-Lin;
Hu, Xin;
Shao, Zhi-Min;
Li, Da-Qiang

Publication type:

Article

Elucidating the influence of linker histone variants on chromatosome dynamics and energetics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3591, doi. 10.1093/nar/gkaa121

By:

Woods, Dustin C;
Wereszczynski, Jeff

Publication type:

Article

Thrombin binding aptamer G-quadruplex stabilized by pyrene-modified nucleotides.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3975, doi. 10.1093/nar/gkaa118

By:

Kovačič, Matic;
Podbevšek, Peter;
Tateishi-Karimata, Hisae;
Takahashi, Shuntaro;
Sugimoto, Naoki;
Plavec, Janez

Publication type:

Article

Structural adaptation of vertebrate endonuclease G for 5-hydroxymethylcytosine recognition and function.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3962, doi. 10.1093/nar/gkaa117

By:

Vander Zanden, Crystal M;
Czarny, Ryan S;
Ho, Ethan N;
Robertson, Adam B;
Ho, P Shing

Publication type:

Article

Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3734, doi. 10.1093/nar/gkaa113

By:

Werner, Stephan;
Schmidt, Lukas;
Marchand, Virginie;
Kemmer, Thomas;
Falschlunger, Christoph;
Sednev, Maksim V;
Bec, Guillaume;
Ennifar, Eric;
Höbartner, Claudia;
Micura, Ronald;
Motorin, Yuri;
Hildebrandt, Andreas;
Helm, Mark

Publication type:

Article

Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3949, doi. 10.1093/nar/gkaa111

By:

Lin, Chien-Chu;
Chen, Yi-Ping;
Yang, Wei-Zen;
Shen, James C K;
Yuan, Hanna S

Publication type:

Article

Improved LbCas12a variants with altered PAM specificities further broaden the genome targeting range of Cas12a nucleases.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3722, doi. 10.1093/nar/gkaa110

By:

Tóth, Eszter;
Varga, Éva;
Kulcsár, Péter István;
Kocsis-Jutka, Virág;
Krausz, Sarah Laura;
Nyeste, Antal;
Welker, Zsombor;
Huszár, Krisztina;
Ligeti, Zoltán;
Tálas, András;
Welker, Ervin

Publication type:

Article

The fungal CCAAT-binding complex and HapX display highly variable but evolutionary conserved synergetic promoter-specific DNA recognition.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3567, doi. 10.1093/nar/gkaa109

By:

Furukawa, Takanori;
Scheven, Mareike Thea;
Misslinger, Matthias;
Zhao, Can;
Hoefgen, Sandra;
Gsaller, Fabio;
Lau, Jeffrey;
Jöchl, Christoph;
Donaldson, Ian;
Valiante, Vito;
Brakhage, Axel A;
Bromley, Michael J;
Haas, Hubertus;
Hortschansky, Peter

Publication type:

Article

Recombination may occur in the absence of transcription in the immunoglobulin heavy chain recombination centre.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3553, doi. 10.1093/nar/gkaa108

By:

Oudinet, Chloé;
Braikia, Fatima-Zohra;
Dauba, Audrey;
Khamlichi, Ahmed Amine

Publication type:

Article

Absence of MeCP2 binding to non-methylated GT-rich sequences in vivo.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3542, doi. 10.1093/nar/gkaa102

By:

Connelly, John C;
Cholewa-Waclaw, Justyna;
Webb, Shaun;
Steccanella, Verdiana;
Waclaw, Bartlomiej;
Bird, Adrian

Publication type:

Article

FIGLA, LHX8 and SOHLH1 transcription factor networks regulate mouse oocyte growth and differentiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3525, doi. 10.1093/nar/gkaa101

By:

Wang, Zhengpin;
Liu, Chen-Yu;
Zhao, Yangu;
Dean, Jurrien

Publication type:

Article

Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e42, doi. 10.1093/nar/gkaa099

By:

Rolando, Justin C;
Jue, Erik;
Barlow, Jacob T;
Ismagilov, Rustem F

Publication type:

Article

Oplr16 serves as a novel chromatin factor to control stem cell fate by modulating pluripotency-specific chromosomal looping and TET2-mediated DNA demethylation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3935, doi. 10.1093/nar/gkaa097

By:

Jia, Lin;
Wang, Yichen;
Wang, Cong;
Du, Zhonghua;
Zhang, Shilin;
Wen, Xue;
Zhou, Lei;
Li, Hui;
Chen, Huiling;
Li, Dan;
Zhang, Songling;
Li, Wei;
Xu, Wei;
Hoffman, Andrew R;
Cui, Jiuwei;
Hu, Ji-Fan

Publication type:

Article

Site-specific proteolytic cleavage prevents ubiquitination and degradation of human REV3L, the catalytic subunit of DNA polymerase ζ.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3619, doi. 10.1093/nar/gkaa096

By:

Wang, Fengting;
Li, Pan;
Shao, Yuan;
Li, Yanyan;
Zhang, Kai;
Li, Miaomiao;
Wang, Rong;
Zheng, Shuo;
Wang, Yingying;
Song, Sen;
Feng, Shiguo;
Liu, Fei;
Xiao, Wei;
Li, Xialu

Publication type:

Article

Polymerase μ in non-homologous DNA end joining: importance of the order of arrival at a double-strand break in a purified system.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3605, doi. 10.1093/nar/gkaa094

By:

Zhao, Bailin;
Watanabe, Go;
Lieber, Michael R

Publication type:

Article

RNase II binds to RNase E and modulates its endoribonucleolytic activity in the cyanobacterium Anabaena PCC 7120.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3922, doi. 10.1093/nar/gkaa092

By:

Zhou, Cong;
Zhang, Juyuan;
Hu, Xinyu;
Li, Changchang;
Wang, Li;
Huang, Qiaoyun;
Chen, Wenli

Publication type:

Article

Broadly applicable oligonucleotide mass spectrometry for the analysis of RNA writers and erasers in vitro.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e41, doi. 10.1093/nar/gkaa091

By:

Hagelskamp, Felix;
Borland, Kayla;
Ramos, Jillian;
Hendrick, Alan G;
Fu, Dragony;
Kellner, Stefanie

Publication type:

Article

Multiplex accurate sensitive quantitation (MASQ) with application to minimal residual disease in acute myeloid leukemia.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e40, doi. 10.1093/nar/gkaa090

By:

Moffitt, Andrea B;
Spector, Mona S;
Andrews, Peter;
Kendall, Jude;
Alexander, Joan;
Stepansky, Asya;
Ma, BeiCong;
Kolitz, Jonathan;
Chiorazzi, Nicholas;
Allen, Steven L;
Krasnitz, Alex;
Wigler, Michael;
Levy, Dan;
Wang, Zihua

Publication type:

Article

Looping of upstream cis-regulatory elements is required for CFTR expression in human airway epithelial cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3513, doi. 10.1093/nar/gkaa089

By:

NandyMazumdar, Monali;
Yin, Shiyi;
Paranjapye, Alekh;
Kerschner, Jenny L;
Swahn, Hannah;
Ge, Alex;
Leir, Shih-Hsing;
Harris, Ann

Publication type:

Article

HDAC3 functions as a positive regulator in Notch signal transduction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3496, doi. 10.1093/nar/gkaa088

By:

Ferrante, Francesca;
Giaimo, Benedetto Daniele;
Bartkuhn, Marek;
Zimmermann, Tobias;
Close, Viola;
Mertens, Daniel;
Nist, Andrea;
Stiewe, Thorsten;
Meier-Soelch, Johanna;
Kracht, Michael;
Just, Steffen;
Klöble, Patricia;
Oswald, Franz;
Borggrefe, Tilman

Publication type:

Article

Hierarchical chromatin organization detected by TADpole.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e39, doi. 10.1093/nar/gkaa087

By:

Soler-Vila, Paula;
Cuscó, Pol;
Farabella, Irene;
Di Stefano, Marco;
Marti-Renom, Marc A

Publication type:

Article

Synthetic CRISPR/Cas9 reagents facilitate genome editing and homology directed repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e38, doi. 10.1093/nar/gkaa085

By:

DiNapoli, Sara E;
Martinez-McFaline, Raul;
Gribbin, Caitlin K;
Wrighton, Paul J;
Balgobin, Courtney A;
Nelson, Isabel;
Leonard, Abigail;
Maskin, Carolyn R;
Shwartz, Arkadi;
Quenzer, Eleanor D;
Mailhiot, Darya;
Kao, Clara;
McConnell, Sean C;
de Jong, Jill L O;
Goessling, Wolfram;
Houvras, Yariv

Publication type:

Article

The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3476, doi. 10.1093/nar/gkaa082

By:

Zraly, Claudia B;
Zakkar, Abdul;
Perez, John Hertenstein;
Ng, Jeffrey;
White, Kevin P;
Slattery, Matthew;
Dingwall, Andrew K

Publication type:

Article

A genetic analysis reveals novel histone residues required for transcriptional reprogramming upon stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3455, doi. 10.1093/nar/gkaa081

By:

Viéitez, Cristina;
Martínez-Cebrián, Gerard;
Solé, Carme;
Böttcher, René;
Potel, Clement M;
Savitski, Mikhail M;
Onnebo, Sara;
Fabregat, Marc;
Shilatifard, Ali;
Posas, Francesc;
de Nadal, Eulàlia

Publication type:

Article

Machine-driven parameter screen of biochemical reactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. e37, doi. 10.1093/nar/gkaa079

By:

Poulain, Stéphane;
Arnaud, Ophélie;
Kato, Sachi;
Chen, Iris;
Ishida, Hiro;
Carninci, Piero;
Plessy, Charles

Publication type:

Article

Trafficking of siRNA precursors by the dsRBD protein Blanks in Drosophila.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3906, doi. 10.1093/nar/gkaa072

By:

Nitschko, Volker;
Kunzelmann, Stefan;
Fröhlich, Thomas;
Arnold, Georg J;
Förstemann, Klaus

Publication type:

Article

Proteotoxic stress promotes entrapment of ribosomes and misfolded proteins in a shared cytosolic compartment.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3888, doi. 10.1093/nar/gkaa068

By:

Ghosh, Arnab;
Williams, Loren Dean;
Pestov, Dimitri G;
Shcherbik, Natalia

Publication type:

Article

Concurrent binding to DNA and RNA facilitates the pluripotency reprogramming activity of Sox2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3869, doi. 10.1093/nar/gkaa067

By:

Hou, Linlin;
Wei, Yuanjie;
Lin, Yingying;
Wang, Xiwei;
Lai, Yiwei;
Yin, Menghui;
Chen, Yanpu;
Guo, Xiangpeng;
Wu, Senbin;
Zhu, Yindi;
Yuan, Jie;
Tariq, Muqddas;
Li, Na;
Sun, Hao;
Wang, Huating;
Zhang, Xiaofei;
Chen, Jiekai;
Bao, Xichen;
Jauch, Ralf

Publication type:

Article

Synergistic defects in pre-rRNA processing from mutations in the U3-specific protein Rrp9 and U3 snoRNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3848, doi. 10.1093/nar/gkaa066

By:

Clerget, Guillaume;
Bourguignon-Igel, Valérie;
Marmier-Gourrier, Nathalie;
Rolland, Nicolas;
Wacheul, Ludivine;
Manival, Xavier;
Charron, Christophe;
Kufel, Joanna;
Méreau, Agnès;
Senty-Ségault, Véronique;
Tollervey, David;
Lafontaine, Denis L J;
Branlant, Christiane;
Rederstorff, Mathieu

Publication type:

Article

RNA processing machineries in Archaea: the 5′-3′ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3′-5′ exoribonucleolytic RNA exosome machinery.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3832, doi. 10.1093/nar/gkaa052

By:

Phung, Duy Khanh;
Etienne, Clarisse;
Batista, Manon;
Langendijk-Genevaux, Petra;
Moalic, Yann;
Laurent, Sébastien;
Liuu, Sophie;
Morales, Violette;
Jebbar, Mohamed;
Fichant, Gwennaele;
Bouvier, Marie;
Flament, Didier;
Clouet-d'Orval, Béatrice

Publication type:

Article

The m<sup>6</sup>A reader YTHDF1 promotes ovarian cancer progression via augmenting EIF3C translation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3816, doi. 10.1093/nar/gkaa048

By:

Liu, Tao;
Wei, Qinglv;
Jin, Jing;
Luo, Qingya;
Liu, Yi;
Yang, Yu;
Cheng, Chunming;
Li, Lanfang;
Pi, Jingnan;
Si, Yanmin;
Xiao, Hualiang;
Li, Li;
Rao, Shuan;
Wang, Fang;
Yu, Jianhua;
Yu, Jia;
Zou, Dongling;
Yi, Ping

Publication type:

Article

Inhibition of cytoplasmic cap methylation identifies 5′ TOP mRNAs as recapping targets and reveals recapping sites downstream of native 5′ ends.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3806, doi. 10.1093/nar/gkaa046

By:

del Valle Morales, Daniel;
Trotman, Jackson B;
Bundschuh, Ralf;
Schoenberg, Daniel R

Publication type:

Article

Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3435, doi. 10.1093/nar/gkaa026

By:

Pande, Amit;
Makalowski, Wojciech;
Brosius, Jürgen;
Raabe, Carsten A

Publication type:

Article

Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3776, doi. 10.1093/nar/gkaa024

By:

Gao, Ang;
Vasilyev, Nikita;
Kaushik, Abhishek;
Duan, Wenqian;
Serganov, Alexander

Publication type:

Article

circSamd4 represses myogenic transcriptional activity of PUR proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 7, p. 3789, doi. 10.1093/nar/gkaa035

By:

Pandey, Poonam R;
Yang, Jen-Hao;
Tsitsipatis, Dimitrios;
Panda, Amaresh C;
Noh, Ji Heon;
Kim, Kyoung Mi;
Munk, Rachel;
Nicholson, Thomas;
Hanniford, Douglas;
Argibay, Diana;
Yang, Xiaoling;
Martindale, Jennifer L;
Chang, Ming-Wen;
Jones, Simon W;
Hernando, Eva;
Sen, Payel;
De, Supriyo;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article