Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 6

Results: 49

Molecular structure of a U•A-U-rich RNA triple helix with 11 consecutive base triples.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3304, doi. 10.1093/nar/gkz1222

By:

Ruszkowska, Agnieszka;
Ruszkowski, Milosz;
Hulewicz, Jacob P;
Dauter, Zbigniew;
Brown, Jessica A

Publication type:

Article

Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3228, doi. 10.1093/nar/gkz1240

By:

Creutzburg, Sjoerd C A;
Wu, Wen Y;
Mohanraju, Prarthana;
Swartjes, Thomas;
Alkan, Ferhat;
Gorodkin, Jan;
Staals, Raymond H J;
der Oost, John van

Publication type:

Article

The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3211, doi. 10.1093/nar/gkz1239

By:

Ganesh, Sravya;
Horvat, Filip;
Drutovic, David;
Efenberkova, Michaela;
Pinkas, Dominik;
Jindrova, Anna;
Pasulka, Josef;
Iyyappan, Rajan;
Malik, Radek;
Susor, Andrej;
Vlahovicek, Kristian;
Solc, Petr;
Svoboda, Petr

Publication type:

Article

The critical function of the plastid rRNA methyltransferase, CMAL, in ribosome biogenesis and plant development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3195, doi. 10.1093/nar/gkaa129

By:

Zou, Meijuan;
Mu, Ying;
Chai, Xin;
Ouyang, Min;
Yu, Long-Jiang;
Zhang, Lixin;
Meurer, Jörg;
Chi, Wei

Publication type:

Article

Comparison of the efficacy of MOE and PMO modifications of systemic antisense oligonucleotides in a severe SMA mouse model.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2853, doi. 10.1093/nar/gkaa126

By:

Sheng, Lei;
Rigo, Frank;
Bennett, C Frank;
Krainer, Adrian R;
Hua, Yimin

Publication type:

Article

GO: a functional reporter system to identify and enrich base editing activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2841, doi. 10.1093/nar/gkaa124

By:

Katti, Alyna;
Foronda, Miguel;
Zimmerman, Jill;
Diaz, Bianca;
Zafra, Maria Paz;
Goswami, Sukanya;
Dow, Lukas E

Publication type:

Article

Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2866, doi. 10.1093/nar/gkaa123

By:

Mitchelmore, Joanna;
Grinberg, Nastasiya F;
Wallace, Chris;
Spivakov, Mikhail

Publication type:

Article

Retraction: Involvement of Hus1 in the chain elongation step of DNA replication after exposure to camptothecin or ionizing radiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3396, doi. 10.1093/nar/gkaa119

By:

Wang, Xiang;
Guan, Jun;
Hu, Baocheng;
Weiss, Robert S;
Iliakis, George;
Wang, Ya

Publication type:

Article

SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3395, doi. 10.1093/nar/gkaa114

By:

Martínez-García, Esteban;
Goñi-Moreno, Angel;
Bartley, Bryan;
McLaughlin, James;
Sánchez-Sampedro, Lucas;
del Pozo, Héctor Pascual;
Hernández, Clara Prieto;
Marletta, Ada Serena;
De Lucrezia, Davide;
Sánchez-Fernández, Guzmán;
Fraile, Sofía;
de Lorenzo, Víctor

Publication type:

Article

Cyclic di-AMP, a second messenger of primary importance: tertiary structures and binding mechanisms.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2807, doi. 10.1093/nar/gkaa112

By:

He, Jin;
Yin, Wen;
Galperin, Michael Y;
Chou, Shan-Ho

Publication type:

Article

A memory switch for plant synthetic biology based on the phage ϕC31 integration system.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3379, doi. 10.1093/nar/gkaa104

By:

Bernabé-Orts, Joan Miquel;
Quijano-Rubio, Alfredo;
Vazquez-Vilar, Marta;
Mancheño-Bonillo, Javier;
Moles-Casas, Victor;
Selma, Sara;
Gianoglio, Silvia;
Granell, Antonio;
Orzaez, Diego

Publication type:

Article

Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3134, doi. 10.1093/nar/gkaa100

By:

Wu, Jian;
Zhou, Cuiji;
Li, James;
Li, Chun;
Tao, Xiaorong;
Leontis, Neocles B;
Zirbel, Craig L;
Bisaro, David M;
Ding, Biao

Publication type:

Article

Alteration of CTCF-associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3119, doi. 10.1093/nar/gkaa098

By:

Li, Ying;
Liao, Ziwei;
Luo, Huacheng;
Benyoucef, Aissa;
Kang, Yuanyuan;
Lai, Qian;
Dovat, Sinisa;
Miller, Barbara;
Chepelev, Iouri;
Li, Yangqiu;
Zhao, Keji;
Brand, Marjorie;
Huang, Suming

Publication type:

Article

DNA nanotechnology assisted nanopore-based analysis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2791, doi. 10.1093/nar/gkaa095

By:

Ding, Taoli;
Yang, Jing;
Pan, Victor;
Zhao, Nan;
Lu, Zuhong;
Ke, Yonggang;
Zhang, Cheng

Publication type:

Article

Molecular basis for t<sup>6</sup>A modification in human mitochondria.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3181, doi. 10.1093/nar/gkaa093

By:

Zhou, Jing-Bo;
Wang, Yong;
Zeng, Qi-Yu;
Meng, Shi-Xin;
Wang, En-Duo;
Zhou, Xiao-Long

Publication type:

Article

2′-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2830, doi. 10.1093/nar/gkaa086

By:

Hardwick, Jack S;
Haugland, Marius M;
El-Sagheer, Afaf H;
Ptchelkine, Denis;
Beierlein, Frank R;
Lane, Andrew N;
Brown, Tom;
Lovett, Janet E;
Anderson, Edward A

Publication type:

Article

The complex formed between a synthetic RNA aptamer and the transcription repressor TetR is a structural and functional twin of the operator DNA–TetR regulator complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3366, doi. 10.1093/nar/gkaa083

By:

Grau, Florian C;
Jaeger, Jeannine;
Groher, Florian;
Suess, Beatrix;
Muller, Yves A

Publication type:

Article

A conserved sequence signature is essential for robust plant miRNA biogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3103, doi. 10.1093/nar/gkaa077

By:

Narjala, Anushree;
Nair, Ashwin;
Tirumalai, Varsha;
Hari Sundar, G Vivek;
Shivaprasad, Padubidri V

Publication type:

Article

Structural basis of the zinc-induced cytoplasmic aggregation of the RNA-binding protein SFPQ.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3356, doi. 10.1093/nar/gkaa076

By:

Huang, Jie;
Ringuet, Mitchell;
Whitten, Andrew E;
Caria, Sofia;
Lim, Yee Wa;
Badhan, Rahul;
Anggono, Victor;
Lee, Mihwa

Publication type:

Article

Mycobacterial DNA polymerase I: activities and crystal structures of the POL domain as apoenzyme and in complex with a DNA primer-template and of the full-length FEN/EXO–POL enzyme.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3165, doi. 10.1093/nar/gkaa075

By:

Ghosh, Shreya;
Goldgur, Yehuda;
Shuman, Stewart

Publication type:

Article

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e36, doi. 10.1093/nar/gkaa074

By:

Goubert, Clément;
Thomas, Jainy;
Payer, Lindsay M;
Kidd, Jeffrey M;
Feusier, Julie;
Watkins, W Scott;
Burns, Kathleen H;
Jorde, Lynn B;
Feschotte, Cédric

Publication type:

Article

Bending and looping of long DNA by Polycomb repressive complex 2 revealed by AFM imaging in liquid.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2969, doi. 10.1093/nar/gkaa073

By:

Heenan, Patrick R;
Wang, Xueyin;
Gooding, Anne R;
Cech, Thomas R;
Perkins, Thomas T

Publication type:

Article

Structural studies reveal a ring-shaped architecture of deep-sea vent phage NrS-1 polymerase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3343, doi. 10.1093/nar/gkaa071

By:

Chen, Xi;
Su, Shichen;
Chen, Yiqing;
Gao, Yanqing;
Li, Yangyang;
Shao, Zhiwei;
Zhang, Yixi;
Shao, Qiyuan;
Liu, Hehua;
Li, Jixi;
Ma, Jinbiao;
Gan, Jianhua

Publication type:

Article

N<sup>1</sup>-Methylpseudouridine substitution enhances the performance of synthetic mRNA switches in cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e35, doi. 10.1093/nar/gkaa070

By:

Parr, Callum J C;
Wada, Shunsuke;
Kotake, Kenjiro;
Kameda, Shigetoshi;
Matsuura, Satoshi;
Sakashita, Souhei;
Park, Soyoung;
Sugiyama, Hiroshi;
Kuang, Yi;
Saito, Hirohide

Publication type:

Article

PRMT5-mediated histone arginine methylation antagonizes transcriptional repression by polycomb complex PRC2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2956, doi. 10.1093/nar/gkaa065

By:

Liu, Fan;
Xu, Ye;
Lu, Xiaoqing;
Hamard, Pierre-Jacques;
Karl, Daniel L;
Man, Na;
Mookhtiar, Adnan K;
Martinez, Concepcion;
Lossos, Izidore S;
Sun, Jun;
Nimer, Stephen D

Publication type:

Article

CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2942, doi. 10.1093/nar/gkaa064

By:

Feldmann, Angelika;
Dimitrova, Emilia;
Kenney, Alexander;
Lastuvkova, Anna;
Klose, Robert J

Publication type:

Article

SENEBLOC, a long non-coding RNA suppresses senescence via p53-dependent and independent mechanisms.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3089, doi. 10.1093/nar/gkaa063

By:

Xu, Cheng Lin;
Sang, Ben;
Liu, Guang Zhi;
Li, Jin Ming;
Zhang, Xu Dong;
Liu, Lian Xin;
Thorne, Rick F;
Wu, Mian

Publication type:

Article

Structural basis of the fanconi anemia-associated mutations within the FANCA and FANCG complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3328, doi. 10.1093/nar/gkaa062

By:

Jeong, Eunyoung;
Lee, Seong-Gyu;
Kim, Hyun-Suk;
Yang, Jihyeon;
Shin, Jinwoo;
Kim, Youngran;
Kim, Jihan;
Schärer, Orlando D;
Kim, Youngjin;
Yeo, Jung-Eun;
Kim, Ho Min;
Cho, Yunje

Publication type:

Article

Imaging unlabeled proteins on DNA with super-resolution.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e34, doi. 10.1093/nar/gkaa061

By:

Meijering, Anna E C;
Biebricher, Andreas S;
Sitters, Gerrit;
Brouwer, Ineke;
Peterman, Erwin J G;
Wuite, Gijs J L;
Heller, Iddo

Publication type:

Article

Dynamic structural insights into the molecular mechanism of DNA unwinding by the bacteriophage T7 helicase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3156, doi. 10.1093/nar/gkaa057

By:

Ma, Jian-Bing;
Chen, Ze;
Xu, Chun-Hua;
Huang, Xing-Yuan;
Jia, Qi;
Zou, Zhen-Yu;
Mi, Chen-Yang;
Ma, Dong-Fei;
Lu, Ying;
Zhang, Hui-Dong;
Li, Ming

Publication type:

Article

The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3071, doi. 10.1093/nar/gkaa055

By:

McFarland, Matthew R;
Keller, Corina D;
Childers, Brandon M;
Adeniyi, Stephen A;
Corrigall, Holly;
Raguin, Adélaïde;
Romano, M Carmen;
Stansfield, Ian

Publication type:

Article

Exo1 phosphorylation inhibits exonuclease activity and prevents fork collapse in rad53 mutants independently of the 14-3-3 proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3053, doi. 10.1093/nar/gkaa054

By:

Morafraile, Esther C;
Bugallo, Alberto;
Carreira, Raquel;
Fernández, María;
Martín-Castellanos, Cristina;
Blanco, Miguel G;
Segurado, Mónica

Publication type:

Article

Effects of chain length and geometry on the activation of DNA damage bypass by polyubiquitylated PCNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3042, doi. 10.1093/nar/gkaa053

By:

Takahashi, Tomio S;
Wollscheid, Hans-Peter;
Lowther, Jonathan;
Ulrich, Helle D

Publication type:

Article

WDR5 is a conserved regulator of protein synthesis gene expression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2924, doi. 10.1093/nar/gkaa051

By:

Bryan, Audra F;
Wang, Jing;
Howard, Gregory C;
Guarnaccia, Alissa D;
Woodley, Chase M;
Aho, Erin R;
Rellinger, Eric J;
Matlock, Brittany K;
Flaherty, David K;
Lorey, Shelly L;
Chung, Dai H;
Fesik, Stephen W;
Liu, Qi;
Weissmiller, April M;
Tansey, William P

Publication type:

Article

A single-component light sensor system allows highly tunable and direct activation of gene expression in bacterial cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e33, doi. 10.1093/nar/gkaa044

By:

Li, Xie;
Zhang, Changcheng;
Xu, Xiaopei;
Miao, Jun;
Yao, Jing;
Liu, Renmei;
Zhao, Yuzheng;
Chen, Xianjun;
Yang, Yi

Publication type:

Article

Nuclear envelope attachment of telomeres limits TERRA and telomeric rearrangements in quiescent fission yeast cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3029, doi. 10.1093/nar/gkaa043

By:

Maestroni, Laetitia;
Reyes, Céline;
Vaurs, Mélina;
Gachet, Yannick;
Tournier, Sylvie;
Géli, Vincent;
Coulon, Stéphane

Publication type:

Article

Measuring mRNA translation in neuronal processes and somata by tRNA-FRET.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e32, doi. 10.1093/nar/gkaa042

By:

Koltun, Bella;
Ironi, Sivan;
Gershoni-Emek, Noga;
Barrera, Iliana;
Hleihil, Mohammad;
Nanguneri, Siddharth;
Sasmal, Ranjan;
Agasti, Sarit S;
Nair, Deepak;
Rosenblum, Kobi

Publication type:

Article

HDAC8 cooperates with SMAD3/4 complex to suppress SIRT7 and promote cell survival and migration.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2912, doi. 10.1093/nar/gkaa039

By:

Tang, Xiaolong;
Li, Guo;
Su, Fengting;
Cai, Yanlin;
Shi, Lei;
Meng, Yuan;
Liu, Zuojun;
Sun, Jie;
Wang, Ming;
Qian, Minxian;
Wang, Zimei;
Xu, Xingzhi;
Cheng, Yong-Xian;
Zhu, Wei-Guo;
Liu, Baohua

Publication type:

Article

Cooperation of the NEIL3 and Fanconi anemia/BRCA pathways in interstrand crosslink repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3014, doi. 10.1093/nar/gkaa038

By:

Li, Niu;
Wang, Jian;
Wallace, Susan S;
Chen, Jing;
Zhou, Jia;
D'Andrea, Alan D

Publication type:

Article

IDR2D identifies reproducible genomic interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. e31, doi. 10.1093/nar/gkaa030

By:

Krismer, Konstantin;
Guo, Yuchun;
Gifford, David K

Publication type:

Article

A crucial RNA-binding lysine residue in the Nab3 RRM domain undergoes SET1 and SET3-responsive methylation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2897, doi. 10.1093/nar/gkaa029

By:

Lee, Kwan Yin;
Chopra, Anand;
Burke, Giovanni L;
Chen, Ziyan;
Greenblatt, Jack F;
Biggar, Kyle K;
Meneghini, Marc D

Publication type:

Article

An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3286, doi. 10.1093/nar/gkaa025

By:

Bajad, Prajakta;
Ebner, Florian;
Amman, Fabian;
Szabó, Brigitta;
Kapoor, Utkarsh;
Manjali, Greeshma;
Hildebrandt, Alwine;
Janisiw, Michael P;
Jantsch, Michael F

Publication type:

Article

Poly(ADP-ribosyl)ation mediates early phase histone eviction at DNA lesions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3001, doi. 10.1093/nar/gkaa022

By:

Yang, Guang;
Chen, Yibin;
Wu, Jiaxue;
Chen, Shih-Hsun;
Liu, Xiuhua;
Singh, Anup Kumar;
Yu, Xiaochun

Publication type:

Article

Correlation between equi-partition of aminoacyl-tRNA synthetases and amino-acid biosynthesis pathways.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3277, doi. 10.1093/nar/gkaa013

By:

Takénaka, Akio;
Moras, Dino

Publication type:

Article

Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive differentiation of the auditory sensory epithelium.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2880, doi. 10.1093/nar/gkaa012

By:

Li, Jun;
Zhang, Ting;
Ramakrishnan, Aarthi;
Fritzsch, Bernd;
Xu, Jinshu;
Wong, Elaine Y M;
Loh, Yong-Hwee Eddie;
Ding, Jianqiang;
Shen, Li;
Xu, Pin-Xian

Publication type:

Article

Genome-wide analysis reveals a switch in the translational program upon oocyte meiotic resumption.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3257, doi. 10.1093/nar/gkaa010

By:

Luong, Xuan G;
Daldello, Enrico Maria;
Rajkovic, Gabriel;
Yang, Cai-Rong;
Conti, Marco

Publication type:

Article

Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3315, doi. 10.1093/nar/gkaa008

By:

Maity, Arijit;
Winnerdy, Fernaldo Richtia;
Chang, Weili Denyse;
Chen, Gang;
Phan, Anh Tuân

Publication type:

Article

SIRT6 coordinates with CHD4 to promote chromatin relaxation and DNA repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 2982, doi. 10.1093/nar/gkaa006

By:

Hou, Tianyun;
Cao, Ziyang;
Zhang, Jun;
Tang, Ming;
Tian, Yuan;
Li, Yinglu;
Lu, Xiaopeng;
Chen, Yongcan;
Wang, Hui;
Wei, Fu-Zheng;
Wang, Lina;
Yang, Yang;
Zhao, Ying;
Wang, Zimei;
Wang, Haiying;
Zhu, Wei-Guo

Publication type:

Article

rRNA expansion segment 27Lb modulates the factor recruitment capacity of the yeast ribosome and shapes the proteome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 6, p. 3244, doi. 10.1093/nar/gkaa003

By:

Shankar, Vaishnavi;
Rauscher, Robert;
Reuther, Julia;
Gharib, Walid H;
Koch, Miriam;
Polacek, Norbert

Publication type:

Article