Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 4

Results: 44

In vitro selection of l-DNA aptamers that bind a structured d-RNA molecule.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1669, doi. 10.1093/nar/gkz1236

By:

Dey, Sougata;
Sczepanski, Jonathan T

Publication type:

Article

Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2189, doi. 10.1093/nar/gkz1235

By:

Frelih, Tjaša;
Wang, Baifan;
Plavec, Janez;
Šket, Primož

Publication type:

Article

A key interaction with RPA orients XPA in NER complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2173, doi. 10.1093/nar/gkz1231

By:

Topolska-Woś, Agnieszka M;
Sugitani, Norie;
Cordoba, John J;
Le Meur, Kateryna V;
Le Meur, Rémy A;
Kim, Hyun Suk;
Yeo, Jung-Eun;
Rosenberg, Daniel;
Hammel, Michal;
Schärer, Orlando D;
Chazin, Walter J

Publication type:

Article

Modulated control of DNA supercoiling balance by the DNA-wrapping domain of bacterial gyrase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2035, doi. 10.1093/nar/gkz1230

By:

Hobson, Matthew J;
Bryant, Zev;
Berger, James M

Publication type:

Article

A chromatin scaffold for DNA damage recognition: how histone methyltransferases prime nucleosomes for repair of ultraviolet light-induced lesions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1652, doi. 10.1093/nar/gkz1229

By:

Gsell, Corina;
Richly, Holger;
Coin, Frédéric;
Naegeli, Hanspeter

Publication type:

Article

The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1748, doi. 10.1093/nar/gkz1227

By:

Shepherd, Jack W;
Greenall, Robert J;
Probert, Matt I J;
Noy, Agnes;
Leake, Mark C

Publication type:

Article

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2156, doi. 10.1093/nar/gkz1226

By:

Qin, Liang;
Bdira, Fredj Ben;
Sterckx, Yann G J;
Volkov, Alexander N;
Vreede, Jocelyne;
Giachin, Gabriele;
van Schaik, Peter;
Ubbink, Marcellus;
Dame, Remus T

Publication type:

Article

DNA targeting by Clostridium cellulolyticum CRISPR–Cas9 Type II-C system.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2026, doi. 10.1093/nar/gkz1225

By:

Fedorova, Iana;
Arseniev, Anatolii;
Selkova, Polina;
Pobegalov, Georgii;
Goryanin, Ignatiy;
Vasileva, Aleksandra;
Musharova, Olga;
Abramova, Marina;
Kazalov, Maksim;
Zyubko, Tatyana;
Artamonova, Tatyana;
Artamonova, Daria;
Shmakov, Sergey;
Khodorkovskii, Mikhail;
Severinov, Konstantin

Publication type:

Article

The landscape of chimeric RNAs in non-diseased tissues and cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1764, doi. 10.1093/nar/gkz1223

By:

Singh, Sandeep;
Qin, Fujun;
Kumar, Shailesh;
Elfman, Justin;
Lin, Emily;
Pham, Lam-Phong;
Yang, Amy;
Li, Hui

Publication type:

Article

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2144, doi. 10.1093/nar/gkz1221

By:

Shin, Yeonoh;
Hedglin, Mark;
Murakami, Katsuhiko S

Publication type:

Article

iFLinkC: an iterative functional linker cloning strategy for the combinatorial assembly and recombination of linker peptides with functional domains.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e24, doi. 10.1093/nar/gkz1210

By:

Gräwe, Alexander;
Ranglack, Jan;
Weyrich, Anastasia;
Stein, Viktor

Publication type:

Article

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e23, doi. 10.1093/nar/gkz1209

By:

Singh, Urminder;
Hur, Manhoi;
Dorman, Karin;
Wurtele, Eve Syrkin

Publication type:

Article

Identification of altered biological processes in heterogeneous RNA-sequencing data by discretization of expression profiles.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1730, doi. 10.1093/nar/gkz1208

By:

Lauria, Andrea;
Peirone, Serena;
Giudice, Marco Del;
Priante, Francesca;
Rajan, Prabhakar;
Caselle, Michele;
Oliviero, Salvatore;
Cereda, Matteo

Publication type:

Article

Integrative network analysis identifies cell-specific trans regulators of m<sup>6</sup>A.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1715, doi. 10.1093/nar/gkz1206

By:

An, Sanqi;
Huang, Wanxu;
Huang, Xiang;
Cun, Yixian;
Cheng, Weisheng;
Sun, Xiang;
Ren, Zhijun;
Chen, Yaxin;
Chen, Wenfang;
Wang, Jinkai

Publication type:

Article

Reassembling green fluorescent protein for in vitro evaluation of trans-translation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e22, doi. 10.1093/nar/gkz1204

By:

Guyomar, Charlotte;
Thépaut, Marion;
Nonin-Lecomte, Sylvie;
Méreau, Agnès;
Goude, Renan;
Gillet, Reynald

Publication type:

Article

ssDNA diffuses along replication protein A via a reptation mechanism.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1701, doi. 10.1093/nar/gkz1202

By:

Mishra, Garima;
Bigman, Lavi S;
Levy, Yaakov

Publication type:

Article

Dynamics of DNA nicking and unwinding by the RepC–PcrA complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2013, doi. 10.1093/nar/gkz1200

By:

Carrasco, Carolina;
Pastrana, Cesar L;
Aicart-Ramos, Clara;
Leuba, Sanford H;
Khan, Saleem A;
Moreno-Herrero, Fernando

Publication type:

Article

Disentangling sRNA-Seq data to study RNA communication between species.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e21, doi. 10.1093/nar/gkz1198

By:

Bermúdez-Barrientos, José Roberto;
Ramírez-Sánchez, Obed;
Chow, Franklin Wang-Ngai;
Buck, Amy H;
Abreu-Goodger, Cei

Publication type:

Article

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2000, doi. 10.1093/nar/gkz1197

By:

Pinilla-Redondo, Rafael;
Mayo-Muñoz, David;
Russel, Jakob;
Garrett, Roger A;
Randau, Lennart;
Sørensen, Søren J;
Shah, Shiraz A

Publication type:

Article

Reverse genetics-based biochemical studies of the ribosomal exit tunnel constriction region in eukaryotic ribosome stalling: spatial allocation of the regulatory nascent peptide at the constriction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1985, doi. 10.1093/nar/gkz1190

By:

Takamatsu, Seidai;
Ohashi, Yubun;
Onoue, Noriyuki;
Tajima, Yoko;
Imamichi, Tomoya;
Yonezawa, Shinya;
Morimoto, Kyoko;
Onouchi, Hitoshi;
Yamashita, Yui;
Naito, Satoshi

Publication type:

Article

Unique repression domains of Pumilio utilize deadenylation and decapping factors to accelerate destruction of target mRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1843, doi. 10.1093/nar/gkz1187

By:

Arvola, René M;
Chang, Chung-Te;
Buytendorp, Joseph P;
Levdansky, Yevgen;
Valkov, Eugene;
Freddolino, Peter L;
Goldstrohm, Aaron C

Publication type:

Article

Adapted formaldehyde gradient cross-linking protocol implicates human eIF3d and eIF3c, k and l subunits in the 43S and 48S pre-initiation complex assembly, respectively.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1969, doi. 10.1093/nar/gkz1185

By:

Herrmannová, Anna;
Prilepskaja, Terezie;
Wagner, Susan;
Šikrová, Darina;
Zeman, Jakub;
Poncová, Kristýna;
Valášek, Leoš Shivaya

Publication type:

Article

Differential expression of duplicated ribosomal protein genes modifies ribosome composition in response to stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1954, doi. 10.1093/nar/gkz1183

By:

Ghulam, Mustafa Malik;
Catala, Mathieu;
Abou Elela, Sherif

Publication type:

Article

Whole-exome sequencing reveals the impact of UVA light mutagenesis in xeroderma pigmentosum variant human cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1941, doi. 10.1093/nar/gkz1182

By:

Moreno, Natália Cestari;
de Souza, Tiago Antonio;
Garcia, Camila Carrião Machado;
Ruiz, Nathalia Quintero;
Corradi, Camila;
Castro, Ligia Pereira;
Munford, Veridiana;
Ienne, Susan;
Alexandrov, Ludmil B;
Menck, Carlos Frederico Martins

Publication type:

Article

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1828, doi. 10.1093/nar/gkz1179

By:

Kim, Hani Jieun;
Osteil, Pierre;
Humphrey, Sean J;
Cinghu, Senthilkumar;
Oldfield, Andrew J;
Patrick, Ellis;
Wilkie, Emilie E;
Peng, Guangdun;
Suo, Shengbao;
Jothi, Raja;
Tam, Patrick P L;
Yang, Pengyi

Publication type:

Article

Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1811, doi. 10.1093/nar/gkz1178

By:

Reed, Kailee J;
Svendsen, Joshua M;
Brown, Kristen C;
Montgomery, Brooke E;
Marks, Taylor N;
Vijayasarathy, Tarah;
Parker, Dylan M;
Nishimura, Erin Osborne;
Updike, Dustin L;
Montgomery, Taiowa A

Publication type:

Article

Highly specific enrichment of rare nucleic acid fractions using Thermus thermophilus argonaute with applications in cancer diagnostics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e19, doi. 10.1093/nar/gkz1165

By:

Song, Jinzhao;
Hegge, Jorrit W;
Mauk, Michael G;
Chen, Junman;
Till, Jacob E;
Bhagwat, Neha;
Azink, Lotte T;
Peng, Jing;
Sen, Moen;
Mays, Jazmine;
Carpenter, Erica L;
van der Oost, John;
Bau, Haim H

Publication type:

Article

APE1 senses DNA single-strand breaks for repair and signaling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1925, doi. 10.1093/nar/gkz1175

By:

Lin, Yunfeng;
Raj, Jude;
Li, Jia;
Ha, Anh;
Hossain, Md Akram;
Richardson, Christine;
Mukherjee, Pinku;
Yan, Shan

Publication type:

Article

Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. e20, doi. 10.1093/nar/gkz1169

By:

Huang, Yiming;
Sheth, Ravi U;
Kaufman, Andrew;
Wang, Harris H

Publication type:

Article

The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2126, doi. 10.1093/nar/gkz1168

By:

Wang, Chuan;
Chao, Yanjie;
Matera, Gianluca;
Gao, Qian;
Vogel, Jörg

Publication type:

Article

Strong suppression of gene conversion with increasing DNA double-strand break load delimited by 53BP1 and RAD52.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1905, doi. 10.1093/nar/gkz1167

By:

Mladenov, Emil;
Staudt, Christian;
Soni, Aashish;
Murmann-Konda, Tamara;
Siemann-Loekes, Maria;
Iliakis, George

Publication type:

Article

Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2107, doi. 10.1093/nar/gkz1166

By:

Lund, Paul E;
Chatterjee, Surajit;
Daher, May;
Walter, Nils G

Publication type:

Article

Estrogen-induced transcription at individual alleles is independent of receptor level and active conformation but can be modulated by coactivators activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1800, doi. 10.1093/nar/gkz1172

By:

Stossi, Fabio;
Dandekar, Radhika D;
Mancini, Maureen G;
Gu, Guowei;
Fuqua, Suzanne A W;
Nardone, Agostina;
De Angelis, Carmine;
Fu, Xiaoyong;
Schiff, Rachel;
Bedford, Mark T;
Xu, Wei;
Johansson, Hans E;
Stephan, Clifford C;
Mancini, Michael A

Publication type:

Article

Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2091, doi. 10.1093/nar/gkz1163

By:

Yadav, Deepak Kumar;
Zigáčková, Dagmar;
Zlobina, Maria;
Klumpler, Tomáš;
Beaumont, Christelle;
Kubíčková, Monika;
Vaňáčová, Štěpánka;
Lukavsky, Peter J

Publication type:

Article

Dihydropyrimidinase protects from DNA replication stress caused by cytotoxic metabolites.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1886, doi. 10.1093/nar/gkz1162

By:

Basbous, Jihane;
Aze, Antoine;
Chaloin, Laurent;
Lebdy, Rana;
Hodroj, Dana;
Ribeyre, Cyril;
Larroque, Marion;
Shepard, Caitlin;
Kim, Baek;
Pruvost, Alain;
Moreaux, Jérôme;
Maiorano, Domenico;
Mechali, Marcel;
Constantinou, Angelos

Publication type:

Article

Effector gene silencing mediated by histone methylation underpins host adaptation in an oomycete plant pathogen.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1790, doi. 10.1093/nar/gkz1160

By:

Wang, Liyuan;
Chen, Han;
Li, JiangJiang;
Shu, Haidong;
Zhang, Xiangxue;
Wang, Yuanchao;
Tyler, Brett M;
Dong, Suomeng

Publication type:

Article

A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2073, doi. 10.1093/nar/gkz1156

By:

Jüttner, Michael;
Weiß, Matthias;
Ostheimer, Nina;
Reglin, Corinna;
Kern, Michael;
Knüppel, Robert;
Ferreira-Cerca, Sébastien

Publication type:

Article

The human HELLS chromatin remodelling protein promotes end resection to facilitate homologous recombination and contributes to DSB repair within heterochromatin.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1872, doi. 10.1093/nar/gkz1146

By:

Kollárovič, Gabriel;
Topping, Caitríona E;
Shaw, Edward P;
Chambers, Anna L

Publication type:

Article

Functional diversity of small nucleolar RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1627, doi. 10.1093/nar/gkz1140

By:

Bratkovič, Tomaž;
Božič, Janja;
Rogelj, Boris

Publication type:

Article

The identity and methylation status of the first transcribed nucleotide in eukaryotic mRNA 5′ cap modulates protein expression in living cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1607, doi. 10.1093/nar/gkaa032

By:

Sikorski, Pawel J;
Warminski, Marcin;
Kubacka, Dorota;
Ratajczak, Tomasz;
Nowis, Dominika;
Kowalska, Joanna;
Jemielity, Jacek

Publication type:

Article

Understanding the effect of controlling phosphorothioate chirality in the DNA gap on the potency and safety of gapmer antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1691, doi. 10.1093/nar/gkaa031

By:

Østergaard, Michael E;
De Hoyos, Cheryl L;
Wan, W Brad;
Shen, Wen;
Low, Audrey;
Berdeja, Andres;
Vasquez, Guillermo;
Murray, Susan;
Migawa, Michael T;
Liang, Xue-hai;
Swayze, Eric E;
Crooke, Stanley T;
Seth, Punit P

Publication type:

Article

I-Motif/miniduplex hybrid structures bind benzothiazole dyes with unprecedented efficiencies: a generic light-up system for label-free DNA nanoassemblies and bioimaging.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1681, doi. 10.1093/nar/gkaa020

By:

Shi, Lili;
Peng, Pai;
Zheng, Jiao;
Wang, Qiwei;
Tian, Zhijin;
Wang, Huihui;
Li, Tao

Publication type:

Article

Comprehensive identification of alternative back-splicing in human tissue transcriptomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 1779, doi. 10.1093/nar/gkaa005

By:

Zhang, Peng;
Zhang, Xiao-Ou;
Jiang, Tingting;
Cai, Lingling;
Huang, Xiao;
Liu, Qi;
Li, Dan;
Lu, Aiping;
Liu, Yan;
Xue, Wen;
Weng, Zhiping

Publication type:

Article

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 4, p. 2050, doi. 10.1093/nar/gkaa002

By:

Angelova, Margarita T;
Dimitrova, Dilyana G;
Da Silva, Bruno;
Marchand, Virginie;
Jacquier, Caroline;
Achour, Cyrinne;
Brazane, Mira;
Goyenvalle, Catherine;
Bourguignon-Igel, Valérie;
Shehzada, Salman;
Khouider, Souraya;
Lence, Tina;
Guerineau, Vincent;
Roignant, Jean-Yves;
Antoniewski, Christophe;
Teysset, Laure;
Bregeon, Damien;
Motorin, Yuri;
Schaefer, Matthias R;
Carré, Clément

Publication type:

Article