Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 22

Results: 46

Single-molecule DNA sequencing of widely varying GC-content using nucleotide release, capture and detection in microdroplets.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e132, doi. 10.1093/nar/gkaa987

By:

Puchtler, Tim J;
Johnson, Kerr;
Palmer, Rebecca N;
Talbot, Emma L;
Ibbotson, Lindsey A;
Powalowska, Paulina K;
Knox, Rachel;
Shibahara, Aya;
M. S. Cunha, Pedro;
Newell, Oliver J;
Wu, Mei;
Chana, Jasmin;
Athanasopoulou, Evangelia-Nefeli;
Waeber, Andreas M;
Stolarek, Magdalena;
Silva, Ana-Luisa;
Mordaka, Justyna M;
Haggis-Powell, Michael;
Xyrafaki, Christina;
Bush, James

Publication type:

Article

The TFIIH subunits p44/p62 act as a damage sensor during nucleotide excision repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12689, doi. 10.1093/nar/gkaa973

By:

Barnett, Jamie T;
Kuper, Jochen;
Koelmel, Wolfgang;
Kisker, Caroline;
Kad, Neil M

Publication type:

Article

Screening for functional transcriptional and splicing regulatory variants with GenIE.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e131, doi. 10.1093/nar/gkaa960

By:

Cooper, Sarah E;
Schwartzentruber, Jeremy;
Bello, Erica;
Coomber, Eve L;
Bassett, Andrew R

Publication type:

Article

RedEx: a method for seamless DNA insertion and deletion in large multimodular polyketide synthase gene clusters.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e130, doi. 10.1093/nar/gkaa956

By:

Song, Chaoyi;
Luan, Ji;
Li, Ruijuan;
Jiang, Chanjuan;
Hou, Yu;
Cui, Qingwen;
Cui, Tianqi;
Tan, Long;
Ma, Zaichao;
Tang, Ya-Jie;
Stewart, A Francis;
Fu, Jun;
Zhang, Youming;
Wang, Hailong

Publication type:

Article

High resolution biosensor to test the capping level and integrity of mRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e129, doi. 10.1093/nar/gkaa955

By:

Moya-Ramírez, Ignacio;
Bouton, Clement;
Kontoravdi, Cleo;
Polizzi, Karen

Publication type:

Article

Directed co-evolution of interacting protein–peptide pairs by compartmentalized two-hybrid replication (C2HR).

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e128, doi. 10.1093/nar/gkaa933

By:

Siau, Jia Wei;
Nonis, Samuel;
Chee, Sharon;
Koh, Li Quan;
Ferrer, Fernando J;
Brown, Christopher J;
Ghadessy, Farid J

Publication type:

Article

TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. e127, doi. 10.1093/nar/gkaa906

By:

Xu, Haiyue;
Wang, Junyan;
Liang, Ying;
Fu, Yujuan;
Li, Sihui;
Huang, Jinghan;
Xu, Heng;
Zou, Wei;
Chen, Baohui

Publication type:

Article

Fragmentation of extracellular ribosomes and tRNAs shapes the extracellular RNAome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12874, doi. 10.1093/nar/gkaa674

By:

Tosar, Juan Pablo;
Segovia, Mercedes;
Castellano, Mauricio;
Gámbaro, Fabiana;
Akiyama, Yasutoshi;
Fagúndez, Pablo;
Olivera, Álvaro;
Costa, Bruno;
Possi, Tania;
Hill, Marcelo;
Ivanov, Pavel;
Cayota, Alfonso

Publication type:

Article

TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 13013, doi. 10.1093/nar/gkaa1170

By:

Xu, Haiyue;
Wang, Junyan;
Liang, Ying;
Fu, Yujuan;
Li, Sihui;
Huang, Jinghan;
Xu, Heng;
Zou, Wei;
Chen, Baohui

Publication type:

Article

Plasmid replication-associated single-strand-specific methyltransferases.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12858, doi. 10.1093/nar/gkaa1163

By:

Fomenkov, Alexey;
Sun, Zhiyi;
Murray, Iain A;
Ruse, Cristian;
McClung, Colleen;
Yamaichi, Yoshiharu;
Raleigh, Elisabeth A;
Roberts, Richard J

Publication type:

Article

Interaction of OIP5-AS1 with MEF2C mRNA promotes myogenic gene expression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12943, doi. 10.1093/nar/gkaa1151

By:

Yang, Jen-Hao;
Chang, Ming-Wen;
Pandey, Poonam R;
Tsitsipatis, Dimitrios;
Yang, Xiaoling;
Martindale, Jennifer L;
Munk, Rachel;
De, Supriyo;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

Swc4 positively regulates telomere length independently of its roles in NuA4 and SWR1 complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12792, doi. 10.1093/nar/gkaa1150

By:

Liu, Jia-Cheng;
Li, Qian-Jin;
He, Ming-Hong;
Hu, Can;
Dai, Pengfei;
Meng, Fei-Long;
Zhou, Bo O;
Zhou, Jin-Qiu

Publication type:

Article

Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12632, doi. 10.1093/nar/gkaa1149

By:

Mestre, Mario Rodríguez;
González-Delgado, Alejandro;
Gutiérrez-Rus, Luis I;
Martínez-Abarca, Francisco;
Toro, Nicolás

Publication type:

Article

Translational control of coronaviruses.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12502, doi. 10.1093/nar/gkaa1116

By:

de Breyne, Sylvain;
Vindry, Caroline;
Guillin, Olivia;
Condé, Lionel;
Mure, Fabrice;
Gruffat, Henri;
Chavatte, Laurent;
Ohlmann, Théophile

Publication type:

Article

Dual conformational recognition by Z-DNA binding protein is important for the B–Z transition process.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12957, doi. 10.1093/nar/gkaa1115

By:

Park, Chaehee;
Zheng, Xu;
Park, Chan Yang;
Kim, Jeesoo;
Lee, Seul Ki;
Won, Hyuk;
Choi, Jinhyuk;
Kim, Yang-Gyun;
Choi, Hee-Jung

Publication type:

Article

BCCIP is required for nucleolar recruitment of eIF6 and 12S pre-rRNA production during 60S ribosome biogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12817, doi. 10.1093/nar/gkaa1114

By:

Ye, Caiyong;
Liu, Bochao;
Lu, Huimei;
Liu, Jingmei;
Rabson, Arnold B;
Jacinto, Estela;
Pestov, Dimitri G;
Shen, Zhiyuan

Publication type:

Article

Metabolic RNA labeling for probing RNA dynamics in bacteria.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12566, doi. 10.1093/nar/gkaa1111

By:

Meng, Liying;
Guo, Yilan;
Tang, Qi;
Huang, Rongbing;
Xie, Yuchen;
Chen, Xing

Publication type:

Article

Serine-70 phosphorylated Bcl-2 prevents oxidative stress-induced DNA damage by modulating the mitochondrial redox metabolism.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12727, doi. 10.1093/nar/gkaa1110

By:

Chong, Stephen Jun Fei;
Iskandar, Kartini;
Lai, Jolin Xiao Hui;
Qu, Jianhua;
Raman, Deepika;
Valentin, Rebecca;
Herbaux, Charles;
Collins, Mary;
Low, Ivan Cherh Chiet;
Loh, Thomas;
Davids, Matthew;
Pervaiz, Shazib

Publication type:

Article

A topologically distinct class of photolyases specific for UV lesions within single-stranded DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12845, doi. 10.1093/nar/gkaa1147

By:

Emmerich, Hans-Joachim;
Saft, Martin;
Schneider, Leonie;
Kock, Dennis;
Batschauer, Alfred;
Essen, Lars-Oliver

Publication type:

Article

The function of RAD52 N-terminal domain is essential for viability of BRCA-deficient cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12778, doi. 10.1093/nar/gkaa1145

By:

Hanamshet, Kritika;
Mazin, Alexander V

Publication type:

Article

Developmental remodelling of non-CG methylation at satellite DNA repeats.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12675, doi. 10.1093/nar/gkaa1135

By:

Ross, Samuel E;
Angeloni, Allegra;
Geng, Fan-Suo;
de Mendoza, Alex;
Bogdanovic, Ozren

Publication type:

Article

Integrating genome sequence and structural data for statistical learning to predict transcription factor binding sites.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12604, doi. 10.1093/nar/gkaa1134

By:

Long, Pengpeng;
Zhang, Lu;
Huang, Bin;
Chen, Quan;
Liu, Haiyan

Publication type:

Article

The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA<sup>+</sup> machine that can switch between oligomeric states.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12983, doi. 10.1093/nar/gkaa1133

By:

Santosh, Vishaka;
Musayev, Faik N;
Jaiswal, Rahul;
Zárate-Pérez, Francisco;
Vandewinkel, Bram;
Dierckx, Caroline;
Endicott, Molly;
Sharifi, Kamyar;
Dryden, Kelly;
Henckaerts, Els;
Escalante, Carlos R

Publication type:

Article

Dual function of GTPBP6 in biogenesis and recycling of human mitochondrial ribosomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12929, doi. 10.1093/nar/gkaa1132

By:

Lavdovskaia, Elena;
Denks, Kärt;
Nadler, Franziska;
Steube, Emely;
Linden, Andreas;
Urlaub, Henning;
Rodnina, Marina V;
Richter-Dennerlein, Ricarda

Publication type:

Article

Double-stranded RNA bending by AU-tract sequences.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12917, doi. 10.1093/nar/gkaa1128

By:

Marin-Gonzalez, Alberto;
Aicart-Ramos, Clara;
Marin-Baquero, Mikel;
Martín-González, Alejandro;
Suomalainen, Maarit;
Kannan, Abhilash;
Vilhena, J G;
Greber, Urs F;
Moreno-Herrero, Fernando;
Pérez, Rubén

Publication type:

Article

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12534, doi. 10.1093/nar/gkaa1126

By:

Kharel, Prakash;
Becker, Gertraud;
Tsvetkov, Vladimir;
Ivanov, Pavel

Publication type:

Article

On the lifetime of bioinformatics web services.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12523, doi. 10.1093/nar/gkaa1125

By:

Kern, Fabian;
Fehlmann, Tobias;
Keller, Andreas

Publication type:

Article

Developmental differences in genome replication program and origin activation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12751, doi. 10.1093/nar/gkaa1124

By:

Rausch, Cathia;
Weber, Patrick;
Prorok, Paulina;
Hörl, David;
Maiser, Andreas;
Lehmkuhl, Anne;
Chagin, Vadim O;
Casas-Delucchi, Corella S;
Leonhardt, Heinrich;
Cardoso, M Cristina

Publication type:

Article

Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12833, doi. 10.1093/nar/gkaa1123

By:

Galvanin, Adeline;
Vogt, Lea-Marie;
Grober, Antonia;
Freund, Isabel;
Ayadi, Lilia;
Bourguignon-Igel, Valerie;
Bessler, Larissa;
Jacob, Dominik;
Eigenbrod, Tatjana;
Marchand, Virginie;
Dalpke, Alexander;
Helm, Mark;
Motorin, Yuri

Publication type:

Article

The topology of chromatin-binding domains in the NuRD deacetylase complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12972, doi. 10.1093/nar/gkaa1121

By:

Millard, Christopher J;
Fairall, Louise;
Ragan, Timothy J;
Savva, Christos G;
Schwabe, John W R

Publication type:

Article

The landscape of long noncoding RNA-involved and tumor-specific fusions across various cancers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12618, doi. 10.1093/nar/gkaa1119

By:

Guo, Mengbiao;
Xiao, Zhen-Dong;
Dai, Zhiming;
Zhu, Ling;
Lei, Hang;
Diao, Li-Ting;
Xiong, Yuanyan

Publication type:

Article

NAD<sup>+</sup> is not utilized as a co-factor for DNA ligation by human DNA ligase IV.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12746, doi. 10.1093/nar/gkaa1118

By:

Zhao, Bailin;
Naila, Tasmin;
Lieber, Michael R;
Tomkinson, Alan E

Publication type:

Article

Structural properties and anticoagulant/cytotoxic activities of heterochiral enantiomeric thrombin binding aptamer (TBA) derivatives.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12556, doi. 10.1093/nar/gkaa1109

By:

Virgilio, Antonella;
Esposito, Veronica;
Pecoraro, Annalisa;
Russo, Annapina;
Vellecco, Valentina;
Pepe, Antonietta;
Bucci, Mariarosaria;
Russo, Giulia;
Galeone, Aldo

Publication type:

Article

PDCD2 functions as an evolutionarily conserved chaperone dedicated for the 40S ribosomal protein uS5 (RPS2).

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12900, doi. 10.1093/nar/gkaa1108

By:

Landry-Voyer, Anne-Marie;
Bergeron, Danny;
Yague-Sanz, Carlo;
Baker, Breac;
Bachand, Francois

Publication type:

Article

Discovery and characterization of a fourth class of guanidine riboswitches.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12889, doi. 10.1093/nar/gkaa1102

By:

Lenkeit, Felina;
Eckert, Iris;
Hartig, Jörg S;
Weinberg, Zasha

Publication type:

Article

Sequence dependent phase separation of protein-polynucleotide mixtures elucidated using molecular simulations.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12593, doi. 10.1093/nar/gkaa1099

By:

Regy, Roshan Mammen;
Dignon, Gregory L;
Zheng, Wenwei;
Kim, Young C;
Mittal, Jeetain

Publication type:

Article

HP1γ regulates H3K36 methylation and pluripotency in embryonic stem cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12660, doi. 10.1093/nar/gkaa1091

By:

Zaidan, Nur Zafirah;
Sridharan, Rupa

Publication type:

Article

The deubiquitinase USP36 Regulates DNA replication stress and confers therapeutic resistance through PrimPol stabilization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12711, doi. 10.1093/nar/gkaa1090

By:

Yan, Yuanliang;
Xu, Zhijie;
Huang, Jinzhou;
Guo, Guijie;
Gao, Ming;
Kim, Wootae;
Zeng, Xiangyu;
Kloeber, Jake A;
Zhu, Qian;
Zhao, Fei;
Luo, Kuntian;
Lou, Zhenkun

Publication type:

Article

Kinetic modeling of stem cell transcriptome dynamics to identify regulatory modules of normal and disturbed neuroectodermal differentiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12577, doi. 10.1093/nar/gkaa1089

By:

Meisig, Johannes;
Dreser, Nadine;
Kapitza, Marion;
Henry, Margit;
Rotshteyn, Tamara;
Rahnenführer, Jörg;
Hengstler, Jan G;
Sachinidis, Agapios;
Waldmann, Tanja;
Leist, Marcel;
Blüthgen, Nils

Publication type:

Article

Interstitial telomere sequences disrupt break-induced replication and drive formation of ectopic telomeres.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12697, doi. 10.1093/nar/gkaa1081

By:

Stivison, Elizabeth A;
Young, Kati J;
Symington, Lorraine S

Publication type:

Article

Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 13000, doi. 10.1093/nar/gkaa1066

By:

Ito, Yoichiro;
Terai, Goro;
Ishigami, Misa;
Hashiba, Noriko;
Nakamura, Yasuyuki;
Bamba, Takahiro;
Kumokita, Ryota;
Hasunuma, Tomohisa;
Asai, Kiyoshi;
Ishii, Jun;
Kondo, Akihiko

Publication type:

Article

Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12436, doi. 10.1093/nar/gkaa1053

By:

Manfredonia, Ilaria;
Nithin, Chandran;
Ponce-Salvatierra, Almudena;
Ghosh, Pritha;
Wirecki, Tomasz K;
Marinus, Tycho;
Ogando, Natacha S;
Snijder, Eric J;
van Hemert, Martijn J;
Bujnicki, Janusz M;
Incarnato, Danny

Publication type:

Article

Quantification of the effect of site-specific histone acetylation on chromatin transcription rate.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12648, doi. 10.1093/nar/gkaa1050

By:

Wakamori, Masatoshi;
Okabe, Kohki;
Ura, Kiyoe;
Funatsu, Takashi;
Takinoue, Masahiro;
Umehara, Takashi

Publication type:

Article

Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12415, doi. 10.1093/nar/gkaa1013

By:

Wacker, Anna;
Weigand, Julia E;
Akabayov, Sabine R;
Altincekic, Nadide;
Bains, Jasleen Kaur;
Banijamali, Elnaz;
Binas, Oliver;
Castillo-Martinez, Jesus;
Cetiner, Erhan;
Ceylan, Betül;
Chiu, Liang-Yuan;
Davila-Calderon, Jesse;
Dhamotharan, Karthikeyan;
Duchardt-Ferner, Elke;
Ferner, Jan;
Frydman, Lucio;
Fürtig, Boris;
Gallego, José;
Grün, J Tassilo;
Hacker, Carolin

Publication type:

Article

A unified model for the G1/S cell cycle transition.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12483, doi. 10.1093/nar/gkaa1002

By:

Hume, Samuel;
Dianov, Grigory L;
Ramadan, Kristijan

Publication type:

Article

Epigenome engineering: new technologies for precision medicine.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 22, p. 12453, doi. 10.1093/nar/gkaa1000

By:

Sgro, Agustin;
Blancafort, Pilar

Publication type:

Article