Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 21

Results: 46

Post-transcriptional control of cellular differentiation by the RNA exosome complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11913, doi. 10.1093/nar/gkaa883

By:

Fraga de Andrade, Isabela;
Mehta, Charu;
Bresnick, Emery H

Publication type:

Article

Construction of a highly error-prone DNA polymerase for developing organelle mutation systems.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11868, doi. 10.1093/nar/gkaa929

By:

Ji, Junwei;
Day, Anil

Publication type:

Article

PpCas9 from Pasteurella pneumotropica — a compact Type II-C Cas9 ortholog active in human cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12297, doi. 10.1093/nar/gkaa998

By:

Fedorova, Iana;
Vasileva, Aleksandra;
Selkova, Polina;
Abramova, Marina;
Arseniev, Anatolii;
Pobegalov, Georgii;
Kazalov, Maksim;
Musharova, Olga;
Goryanin, Ignatiy;
Artamonova, Daria;
Zyubko, Tatyana;
Shmakov, Sergey;
Artamonova, Tatyana;
Khodorkovskii, Mikhail;
Severinov, Konstantin

Publication type:

Article

Enzymatic synthesis of hypermodified DNA polymers for sequence-specific display of four different hydrophobic groups.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11982, doi. 10.1093/nar/gkaa999

By:

Ondruš, Marek;
Sýkorová, Veronika;
Bednárová, Lucie;
Pohl, Radek;
Hocek, Michal

Publication type:

Article

Novel ribonucleotide discrimination in the RNA polymerase-like two-barrel catalytic core of Family D DNA polymerases.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12204, doi. 10.1093/nar/gkaa986

By:

Zatopek, Kelly M;
Alpaslan, Ece;
Evans, Thomas C;
Sauguet, Ludovic;
Gardner, Andrew F

Publication type:

Article

INDEL detection, the 'Achilles heel' of precise genome editing: a survey of methods for accurate profiling of gene editing induced indels.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11958, doi. 10.1093/nar/gkaa975

By:

Bennett, Eric Paul;
Petersen, Bent Larsen;
Johansen, Ida Elisabeth;
Niu, Yiyuan;
Yang, Zhang;
Chamberlain, Christopher Aled;
Met, Özcan;
Wandall, Hans H;
Frödin, Morten

Publication type:

Article

Stretching DNA origami: effect of nicks and Holliday junctions on the axial stiffness.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12407, doi. 10.1093/nar/gkaa985

By:

Jung, Wei-Hung;
Chen, Enze;
Veneziano, Remi;
Gaitanaros, Stavros;
Chen, Yun

Publication type:

Article

Multiple biochemical properties of the p53 molecule contribute to activation of polymerase iota-dependent DNA damage tolerance.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12188, doi. 10.1093/nar/gkaa974

By:

Biber, Stephanie;
Pospiech, Helmut;
Gottifredi, Vanesa;
Wiesmüller, Lisa

Publication type:

Article

The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12310, doi. 10.1093/nar/gkaa972

By:

Lacoux, Caroline;
Wacheul, Ludivine;
Saraf, Kritika;
Pythoud, Nicolas;
Huvelle, Emmeline;
Figaro, Sabine;
Graille, Marc;
Carapito, Christine;
Lafontaine, Denis L J;
Heurgué-Hamard, Valérie

Publication type:

Article

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12102, doi. 10.1093/nar/gkaa966

By:

Gaultney, Robert A;
Vincent, Antony T;
Lorioux, Céline;
Coppée, Jean-Yves;
Sismeiro, Odile;
Varet, Hugo;
Legendre, Rachel;
Cockram, Charlotte A;
Veyrier, Frédéric J;
Picardeau, Mathieu

Publication type:

Article

Benzo[a]pyrene represses DNA repair through altered E2F1/E2F4 function marking an early event in DNA damage-induced cellular senescence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12085, doi. 10.1093/nar/gkaa965

By:

Allmann, Sebastian;
Mayer, Laura;
Olma, Jessika;
Kaina, Bernd;
Hofmann, Thomas G;
Tomicic, Maja T;
Christmann, Markus

Publication type:

Article

Separable functions of Tof1/Timeless in intra-S-checkpoint signalling, replisome stability and DNA topological stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12169, doi. 10.1093/nar/gkaa963

By:

Westhorpe, Rose;
Keszthelyi, Andrea;
Minchell, Nicola E;
Jones, David;
Baxter, Jonathan

Publication type:

Article

G-quadruplex–R-loop interactions and the mechanism of anticancer G-quadruplex binders.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11942, doi. 10.1093/nar/gkaa944

By:

Miglietta, Giulia;
Russo, Marco;
Capranico, Giovanni

Publication type:

Article

2′-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12365, doi. 10.1093/nar/gkaa928

By:

Abou Assi, Hala;
Rangadurai, Atul K;
Shi, Honglue;
Liu, Bei;
Clay, Mary C;
Erharter, Kevin;
Kreutz, Christoph;
Holley, Christopher L;
Al-Hashimi, Hashim M

Publication type:

Article

A robust CRISPR–Cas9-based fluorescent reporter assay for the detection and quantification of DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e126, doi. 10.1093/nar/gkaa897

By:

Eki, Rebeka;
She, Jane;
Parlak, Mahmut;
Benamar, Mouadh;
Du, Kang-Ping;
Kumar, Pankaj;
Abbas, Tarek

Publication type:

Article

How to limit the speed of a motor: the intricate regulation of the XPB ATPase and translocase in TFIIH.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12282, doi. 10.1093/nar/gkaa911

By:

Kappenberger, Jeannette;
Koelmel, Wolfgang;
Schoenwetter, Elisabeth;
Scheuer, Tobias;
Woerner, Julia;
Kuper, Jochen;
Kisker, Caroline

Publication type:

Article

The role of FACT in managing chromatin: disruption, assembly, or repair?

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11929, doi. 10.1093/nar/gkaa912

By:

Formosa, Tim;
Winston, Fred

Publication type:

Article

Tethering-facilitated DNA 'opening' and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12348, doi. 10.1093/nar/gkaa909

By:

Paul, Debamita;
Mu, Hong;
Tavakoli, Amirrasoul;
Dai, Qing;
Chen, Xuejing;
Chakraborty, Sagnik;
He, Chuan;
Ansari, Anjum;
Broyde, Suse;
Min, Jung-Hyun

Publication type:

Article

A flexible, interpretable, and accurate approach for imputing the expression of unmeasured genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e125, doi. 10.1093/nar/gkaa881

By:

Mancuso, Christopher A;
Canfield, Jacob L;
Singla, Deepak;
Krishnan, Arjun

Publication type:

Article

signatureSearch: environment for gene expression signature searching and functional interpretation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e124, doi. 10.1093/nar/gkaa878

By:

Duan, Yuzhu;
Evans, Daniel S;
Miller, Richard A;
Schork, Nicholas J;
Cummings, Steven R;
Girke, Thomas

Publication type:

Article

ASHIC: hierarchical Bayesian modeling of diploid chromatin contacts and structures.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e123, doi. 10.1093/nar/gkaa872

By:

Ye, Tiantian;
Ma, Wenxiu

Publication type:

Article

Direct measurement of protein–protein interactions by FLIM-FRET at UV laser-induced DNA damage sites in living cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e122, doi. 10.1093/nar/gkaa859

By:

Kaufmann, Tanja;
Herbert, Sébastien;
Hackl, Benjamin;
Besold, Johanna Maria;
Schramek, Christopher;
Gotzmann, Josef;
Elsayad, Kareem;
Slade, Dea

Publication type:

Article

Seeker: alignment-free identification of bacteriophage genomes by deep learning.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. e121, doi. 10.1093/nar/gkaa856

By:

Auslander, Noam;
Gussow, Ayal B;
Benler, Sean;
Wolf, Yuri I;
Koonin, Eugene V

Publication type:

Article

PML nuclear bodies and chromatin dynamics: catch me if you can!

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11890, doi. 10.1093/nar/gkaa828

By:

Corpet, Armelle;
Kleijwegt, Constance;
Roubille, Simon;
Juillard, Franceline;
Jacquet, Karine;
Texier, Pascale;
Lomonte, Patrick

Publication type:

Article

RNA as the stone guest of protein aggregation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11880, doi. 10.1093/nar/gkaa822

By:

Louka, Alexandra;
Zacco, Elsa;
Temussi, Piero Andrea;
Tartaglia, Gian Gaetano;
Pastore, Annalisa

Publication type:

Article

Contribution of DNA adenine methylation to gene expression heterogeneity in Salmonella enterica.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11857, doi. 10.1093/nar/gkaa730

By:

Sánchez-Romero, María A;
Olivenza, David R;
Gutiérrez, Gabriel;
Casadesús, Josep

Publication type:

Article

Investigating the pharmacodynamic durability of GalNAc–siRNA conjugates.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11827, doi. 10.1093/nar/gkaa670

By:

Brown, Christopher R;
Gupta, Swati;
Qin, June;
Racie, Timothy;
He, Guo;
Lentini, Scott;
Malone, Ryan;
Yu, Mikyung;
Matsuda, Shigeo;
Shulga-Morskaya, Svetlana;
Nair, Anil V;
Theile, Christopher S;
Schmidt, Karyn;
Shahraz, Azar;
Goel, Varun;
Parmar, Rubina G;
Zlatev, Ivan;
Schlegel, Mark K;
Nair, Jayaprakash K;
Jayaraman, Muthusamy

Publication type:

Article

Rational design of minimal synthetic promoters for plants.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11845, doi. 10.1093/nar/gkaa682

By:

Cai, Yao-Min;
Kallam, Kalyani;
Tidd, Henry;
Gendarini, Giovanni;
Salzman, Amanda;
Patron, Nicola J

Publication type:

Article

Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11815, doi. 10.1093/nar/gkaa627

By:

Teramoto, Takamasa;
Kaitany, Kipchumba J;
Kakuta, Yoshimitsu;
Kimura, Makoto;
Fierke, Carol A;
Hall, Traci M Tanaka

Publication type:

Article

Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12042, doi. 10.1093/nar/gkaa572

By:

Banerjee, Dipanwita;
Tateishi-Karimata, Hisae;
Ohyama, Tatsuya;
Ghosh, Saptarshi;
Endoh, Tamaki;
Takahashi, Shuntaro;
Sugimoto, Naoki

Publication type:

Article

An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12336, doi. 10.1093/nar/gkaa1139

By:

Romilly, Cédric;
Lippegaus, Anne;
Wagner, E Gerhart H

Publication type:

Article

tRNA import across the mitochondrial inner membrane in T. brucei requires TIM subunits but is independent of protein import.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12269, doi. 10.1093/nar/gkaa1098

By:

Shikha, Shikha;
Huot, Jonathan L;
Schneider, André;
Niemann, Moritz

Publication type:

Article

Histone sumoylation promotes Set3 histone-deacetylase complex-mediated transcriptional regulation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12151, doi. 10.1093/nar/gkaa1093

By:

Ryu, Hong-Yeoul;
Zhao, Dejian;
Li, Jianhui;
Su, Dan;
Hochstrasser, Mark

Publication type:

Article

VEZF1–guanine quadruplex DNA interaction regulates alternative polyadenylation and detyrosinase activity of VASH1.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 11994, doi. 10.1093/nar/gkaa1092

By:

Li, Lin;
Williams, Preston;
Gao, Zi;
Wang, Yinsheng

Publication type:

Article

Design and application of circular RNAs with protein-sponge function.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12326, doi. 10.1093/nar/gkaa1085

By:

Schreiner, Silke;
Didio, Anna;
Hung, Lee-Hsueh;
Bindereif, Albrecht

Publication type:

Article

Prophages are associated with extensive CRISPR–Cas auto-immunity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12074, doi. 10.1093/nar/gkaa1071

By:

Nobrega, Franklin L;
Walinga, Hielke;
Dutilh, Bas E;
Brouns, Stan J J

Publication type:

Article

The expression of Rpb10, a small subunit common to RNA polymerases, is modulated by the R3H domain-containing Rbs1 protein and the Upf1 helicase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12252, doi. 10.1093/nar/gkaa1069

By:

Cieśla, Małgorzata;
Turowski, Tomasz W;
Nowotny, Marcin;
Tollervey, David;
Boguta, Magdalena

Publication type:

Article

Instability of CII is needed for efficient switching between lytic and lysogenic development in bacteriophage 186.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12030, doi. 10.1093/nar/gkaa1065

By:

Murchland, Iain M;
Ahlgren-Berg, Alexandra;
Pietsch, Julian M J;
Isabel, Alejandra;
Dodd, Ian B;
Shearwin, Keith E

Publication type:

Article

Generation of onco-enhancer enhances chromosomal remodeling and accelerates tumorigenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12135, doi. 10.1093/nar/gkaa1051

By:

Chai, Peiwei;
Yu, Jie;
Jia, Ruobing;
Wen, Xuyang;
Ding, Tianyi;
Zhang, Xiaoyu;
Ni, Hongyan;
Jia, Renbing;
Ge, Shengfang;
Zhang, He;
Fan, Xianqun

Publication type:

Article

Targeting OGG1 arrests cancer cell proliferation by inducing replication stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12234, doi. 10.1093/nar/gkaa1048

By:

Visnes, Torkild;
Benítez-Buelga, Carlos;
Cázares-Körner, Armando;
Sanjiv, Kumar;
Hanna, Bishoy M F;
Mortusewicz, Oliver;
Rajagopal, Varshni;
Albers, Julian J;
Hagey, Daniel W;
Bekkhus, Tove;
Eshtad, Saeed;
Baquero, Juan Miguel;
Masuyer, Geoffrey;
Wallner, Olov;
Müller, Sarah;
Pham, Therese;
Göktürk, Camilla;
Rasti, Azita;
Suman, Sharda;
Torres-Ruiz, Raúl

Publication type:

Article

RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12016, doi. 10.1093/nar/gkaa1049

By:

Li, Keren;
Hope, C Matthew;
Wang, Xiaozhong A;
Wang, Ji-Ping

Publication type:

Article

Building a tRNA thermometer to estimate microbial adaptation to temperature.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12004, doi. 10.1093/nar/gkaa1030

By:

Cimen, Emre;
Jensen, Sarah E;
Buckler, Edward S

Publication type:

Article

Structural distinctions between NAD<sup>+</sup> riboswitch domains 1 and 2 determine differential folding and ligand binding.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12394, doi. 10.1093/nar/gkaa1029

By:

Chen, Hao;
Egger, Michaela;
Xu, Xiaochen;
Flemmich, Laurin;
Krasheninina, Olga;
Sun, Aiai;
Micura, Ronald;
Ren, Aiming

Publication type:

Article

The ssDNA-binding protein MEIOB acts as a dosage-sensitive regulator of meiotic recombination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12219, doi. 10.1093/nar/gkaa1016

By:

Guo, Rui;
Xu, Yang;
Leu, N Adrian;
Zhang, Lei;
Fuchs, Serge Y;
Ye, Lan;
Wang, P Jeremy

Publication type:

Article

A role for LSH in facilitating DNA methylation by DNMT1 through enhancing UHRF1 chromatin association.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12116, doi. 10.1093/nar/gkaa1003

By:

Han, Mengmeng;
Li, Jialun;
Cao, Yaqiang;
Huang, Yuanyong;
Li, Wen;
Zhu, Haijun;
Zhao, Qian;
Han, Jing-Dong Jackie;
Wu, Qihan;
Li, Jiwen;
Feng, Jing;
Wong, Jiemin

Publication type:

Article

On the interaction of an anticancer trisubstituted naphthalene diimide with G-quadruplexes of different topologies: a structural insight.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 21, p. 12380, doi. 10.1093/nar/gkaa1001

By:

Platella, Chiara;
Trajkovski, Marko;
Doria, Filippo;
Freccero, Mauro;
Plavec, Janez;
Montesarchio, Daniela

Publication type:

Article