Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 20

Results: 50

Efficient DNA double-strand break formation at single or multiple defined sites in the Saccharomyces cerevisiae genome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e115, doi. 10.1093/nar/gkaa833

By:

Gnügge, Robert;
Symington, Lorraine S

Publication type:

Article

Retraction: AKAP12 mediates PKA-induced phosphorylation of ATR to enhance nucleotide excision repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11814, doi. 10.1093/nar/gkaa984

By:

Jarrett, Stuart G;
Wolf Horrell, Erin M;
D'Orazio, John A

Publication type:

Article

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11675, doi. 10.1093/nar/gkaa964

By:

Aguilar, Lisbeth-Carolina;
Paul, Biplab;
Reiter, Taylor;
Gendron, Louis;
Rajan, Arvind Arul Nambi;
Montpetit, Rachel;
Trahan, Christian;
Pechmann, Sebastian;
Oeffinger, Marlene;
Montpetit, Ben

Publication type:

Article

Benchmarking and integrating genome-wide CRISPR off-target detection and prediction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11370, doi. 10.1093/nar/gkaa930

By:

Yan, Jifang;
Xue, Dongyu;
Chuai, Guohui;
Gao, Yuli;
Zhang, Gongchen;
Liu, Qi

Publication type:

Article

DNA binds to a specific site of the adhesive blood-protein von Willebrand factor guided by electrostatic interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11812, doi. 10.1093/nar/gkaa988

By:

Sandoval-Pérez, Angélica;
Berger, Ricarda M L;
Garaizar, Adiran;
Farr, Stephen E;
Brehm, Maria A;
König, Gesa;
Schneider, Stefan W;
Collepardo-Guevara, Rosana;
Huck, Volker;
Rädler, Joachim O;
Aponte-Santamaría, Camilo

Publication type:

Article

Flexizyme-aminoacylated shortened tRNAs demonstrate that only the aminoacylated acceptor arms of the two tRNA substrates are required for cyclodipeptide synthase activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11615, doi. 10.1093/nar/gkaa903

By:

Canu, Nicolas;
Tellier, Carine;
Babin, Morgan;
Thai, Robert;
Ajel, Inès;
Seguin, Jérôme;
Cinquin, Olivier;
Vinck, Robin;
Moutiez, Mireille;
Belin, Pascal;
Cintrat, Jean-Christophe;
Gondry, Muriel

Publication type:

Article

Phosphorylation of Msx1 promotes cell proliferation through the Fgf9/18-MAPK signaling pathway during embryonic limb development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11452, doi. 10.1093/nar/gkaa905

By:

Yang, Yenan;
Zhu, Xiaoli;
Jia, Xiang;
Hou, Wanwan;
Zhou, Guoqiang;
Ma, Zhangjing;
Yu, Bin;
Pi, Yan;
Zhang, Xumin;
Wang, Jingqiang;
Wang, Gang

Publication type:

Article

Synthetic rewiring and boosting type I interferon responses for visualization and counteracting viral infections.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11799, doi. 10.1093/nar/gkaa961

By:

Gödecke, Natascha;
Riedel, Jan;
Herrmann, Sabrina;
Behme, Sara;
Rand, Ulfert;
Kubsch, Tobias;
Cicin-Sain, Luka;
Hauser, Hansjörg;
Köster, Mario;
Wirth, Dagmar

Publication type:

Article

Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11510, doi. 10.1093/nar/gkaa949

By:

Hao, Fanfan;
Murphy, Kevin J;
Kujirai, Tomoya;
Kamo, Naoki;
Kato, Junko;
Koyama, Masako;
Okamato, Akimitsu;
Hayashi, Gosuke;
Kurumizaka, Hitoshi;
Hayes, Jeffrey J

Publication type:

Article

Novel alternative ribonucleotide excision repair pathways in human cells by DDX3X and specialized DNA polymerases.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11551, doi. 10.1093/nar/gkaa948

By:

Riva, Valentina;
Garbelli, Anna;
Casiraghi, Federica;
Arena, Francesca;
Trivisani, Claudia Immacolata;
Gagliardi, Assunta;
Bini, Luca;
Schroeder, Martina;
Maffia, Antonio;
Sabbioneda, Simone;
Maga, Giovanni

Publication type:

Article

Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11495, doi. 10.1093/nar/gkaa938

By:

Dukatz, Michael;
Adam, Sabrina;
Biswal, Mahamaya;
Song, Jikui;
Bashtrykov, Pavel;
Jeltsch, Albert

Publication type:

Article

Viral RNA recognition by LGP2 and MDA5, and activation of signaling through step-by-step conformational changes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11664, doi. 10.1093/nar/gkaa935

By:

Duic, Ivana;
Tadakuma, Hisashi;
Harada, Yoshie;
Yamaue, Ryo;
Deguchi, Katashi;
Suzuki, Yuki;
Yoshimura, Shige H;
Kato, Hiroki;
Takeyasu, Kunio;
Fujita, Takashi

Publication type:

Article

Discovery and development of novel DNA-PK inhibitors by targeting the unique Ku–DNA interaction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11536, doi. 10.1093/nar/gkaa934

By:

Gavande, Navnath S;
VanderVere-Carozza, Pamela S;
Pawelczak, Katherine S;
Mendoza-Munoz, Pamela;
Vernon, Tyler L;
Hanakahi, Leslyn A;
Summerlin, Matthew;
Dynlacht, Joseph R;
Farmer, Annabelle H;
Sears, Catherine R;
Nasrallah, Nawar Al;
Garrett, Joy;
Turchi, John J

Publication type:

Article

Revisiting the organization of Polycomb-repressed domains: 3D chromatin models from Hi-C compared with super-resolution imaging.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11486, doi. 10.1093/nar/gkaa932

By:

Liu, Lei;
Hyeon, Changbong

Publication type:

Article

EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11434, doi. 10.1093/nar/gkaa901

By:

Shi, Xianping;
Zheng, Yueyuan;
Jiang, Liling;
Zhou, Bo;
Yang, Wei;
Li, Liyan;
Ding, Lingwen;
Huang, Moli;
Gery, Sigal;
Lin, De-Chen;
Koeffler, H Phillip

Publication type:

Article

Determinants of correlated expression of transcription factors and their target genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11347, doi. 10.1093/nar/gkaa927

By:

Zaborowski, Adam B;
Walther, Dirk

Publication type:

Article

Predicting single-cell gene expression profiles of imaging flow cytometry data with machine learning.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11335, doi. 10.1093/nar/gkaa926

By:

Chlis, Nikolaos-Kosmas;
Rausch, Lisa;
Brocker, Thomas;
Kranich, Jan;
Theis, Fabian J

Publication type:

Article

TPR is required for the efficient nuclear export of mRNAs and lncRNAs from short and intron-poor genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11645, doi. 10.1093/nar/gkaa919

By:

Lee, Eliza S;
Wolf, Eric J;
Ihn, Sean S J;
Smith, Harrison W;
Emili, Andrew;
Palazzo, Alexander F

Publication type:

Article

The immunorecognition, subcellular compartmentalization, and physicochemical properties of nucleic acid nanoparticles can be controlled by composition modification.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11785, doi. 10.1093/nar/gkaa908

By:

Johnson, Morgan Brittany;
Halman, Justin R;
Miller, Daniel K;
Cooper, Joseph S;
Khisamutdinov, Emil F;
Marriott, Ian;
Afonin, Kirill A

Publication type:

Article

Prevalence of phase variable epigenetic invertons among host-associated bacteria.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11468, doi. 10.1093/nar/gkaa907

By:

Huang, Xueting;
Wang, Juanjuan;
Li, Jing;
Liu, Yanni;
Liu, Xue;
Li, Zeyao;
Kurniyati, Kurni;
Deng, Yijie;
Wang, Guilin;
Ralph, Joseph D;
De Ste Croix, Megan;
Escobar-Gonzalez, Sara;
Roberts, Richard J;
Veening, Jan-Willem;
Lan, Xun;
Oggioni, Marco R;
Li, Chunhao;
Zhang, Jing-Ren

Publication type:

Article

Structural basis of Mfd-dependent transcription termination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11762, doi. 10.1093/nar/gkaa904

By:

Shi, Jing;
Wen, Aijia;
Zhao, Minxing;
Jin, Sha;
You, Linlin;
Shi, Yue;
Dong, Shuling;
Hua, Xiaoting;
Zhang, Yu;
Feng, Yu

Publication type:

Article

Importance of base-pair opening for mismatch recognition.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11322, doi. 10.1093/nar/gkaa896

By:

Bouchal, Tomáš;
Durník, Ivo;
Illík, Viktor;
Réblová, Kamila;
Kulhánek, Petr

Publication type:

Article

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11750, doi. 10.1093/nar/gkaa893

By:

Matzov, Donna;
Taoka, Masato;
Nobe, Yuko;
Yamauchi, Yoshio;
Halfon, Yehuda;
Asis, Nofar;
Zimermann, Ella;
Rozenberg, Haim;
Bashan, Anat;
Bhushan, Shashi;
Isobe, Toshiaki;
Gray, Michael W;
Yonath, Ada;
Shalev-Benami, Moran

Publication type:

Article

Intrinsic DNA topology as a prioritization metric in genomic fine-mapping studies.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11304, doi. 10.1093/nar/gkaa877

By:

Ainsworth, Hannah C;
Howard, Timothy D;
Langefeld, Carl D

Publication type:

Article

A novel assay provides insight into tRNA<sup>Phe</sup> retrograde nuclear import and re-export in S. cerevisiae.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11577, doi. 10.1093/nar/gkaa879

By:

Nostramo, Regina T;
Hopper, Anita K

Publication type:

Article

Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11602, doi. 10.1093/nar/gkaa875

By:

Mo, Youbin;
Keller, Nicholas;
delToro, Damian;
Ananthaswamy, Neeti;
Harvey, Stephen C;
Rao, Venigalla B;
Smith, Douglas E

Publication type:

Article

NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11737, doi. 10.1093/nar/gkaa874

By:

Mahler, Bryon P;
Bujalowski, Paul J;
Mao, Huzhang;
Dill, Erik A;
Jardine, Paul J;
Choi, Kyung H;
Morais, Marc C

Publication type:

Article

Characterization of distinct molecular interactions responsible for IRF3 and IRF7 phosphorylation and subsequent dimerization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11421, doi. 10.1093/nar/gkaa873

By:

Dalskov, Louise;
Narita, Ryo;
Andersen, Line L;
Jensen, Nanna;
Assil, Sonia;
Kristensen, Kennith H;
Mikkelsen, Jacob G;
Fujita, Takashi;
Mogensen, Trine H;
Paludan, Søren R;
Hartmann, Rune

Publication type:

Article

Statistical mechanics of chromosomes: in vivo and in silico approaches reveal high-level organization and structure arise exclusively through mechanical feedback between loop extruders and chromatin substrate properties.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11284, doi. 10.1093/nar/gkaa871

By:

He, Yunyan;
Lawrimore, Josh;
Cook, Diana;
Van Gorder, Elizabeth Erin;
De Larimat, Solenn Claire;
Adalsteinsson, David;
Forest, M Gregory;
Bloom, Kerry

Publication type:

Article

BMPQ-1 binds selectively to (3+1) hybrid topologies in human telomeric G-quadruplex multimers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11259, doi. 10.1093/nar/gkaa870

By:

Gao, Chao;
Liu, Zhu;
Hou, Haitao;
Ding, Jieqin;
Chen, Xin;
Xie, Congbao;
Song, Zibing;
Hu, Zhe;
Feng, Mingqian;
Mohamed, Hany I;
Xu, Shengzhen;
Parkinson, Gary N;
Haider, Shozeb;
Wei, Dengguo

Publication type:

Article

Inhibition of Plasmodium falciparum Lysyl-tRNA synthetase via an anaplastic lymphoma kinase inhibitor.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11566, doi. 10.1093/nar/gkaa862

By:

Zhou, Jintong;
Huang, Zhenghui;
Zheng, Li;
Hei, Zhoufei;
Wang, Zhiyong;
Yu, Biao;
Jiang, Lubin;
Wang, Jing;
Fang, Pengfei

Publication type:

Article

Biophysical analysis of Pseudomonas-phage PaP3 small terminase suggests a mechanism for sequence-specific DNA-binding by lateral interdigitation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11721, doi. 10.1093/nar/gkaa866

By:

Niazi, Marzia;
Florio, Tyler J;
Yang, Ruoyu;
Lokareddy, Ravi K;
Swanson, Nicholas A;
Gillilan, Richard E;
Cingolani, Gino

Publication type:

Article

Structural analysis of SARS-CoV-2 genome and predictions of the human interactome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11270, doi. 10.1093/nar/gkaa864

By:

Vandelli, Andrea;
Monti, Michele;
Milanetti, Edoardo;
Armaos, Alexandros;
Rupert, Jakob;
Zacco, Elsa;
Bechara, Elias;
Delli Ponti, Riccardo;
Tartaglia, Gian Gaetano

Publication type:

Article

Mechanisms coordinating ribosomal protein gene transcription in response to stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11408, doi. 10.1093/nar/gkaa852

By:

Zencir, Sevil;
Dilg, Daniel;
Rueda, Maria Paula;
Shore, David;
Albert, Benjamin

Publication type:

Article

Systematic use of synthetic 5′-UTR RNA structures to tune protein translation improves yield and quality of complex proteins in mammalian cell factories.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e119, doi. 10.1093/nar/gkaa847

By:

Eisenhut, Peter;
Mebrahtu, Aman;
Moradi Barzadd, Mona;
Thalén, Niklas;
Klanert, Gerald;
Weinguny, Marcus;
Sandegren, Anna;
Su, Chao;
Hatton, Diane;
Borth, Nicole;
Rockberg, Johan

Publication type:

Article

Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e118, doi. 10.1093/nar/gkaa845

By:

Stewart, Jessica A;
Schauer, Grant;
Bhagwat, Ashok S

Publication type:

Article

Label-free profiling of DNA aptamer-small molecule binding using T5 exonuclease.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e120, doi. 10.1093/nar/gkaa849

By:

Alkhamis, Obtin;
Yang, Weijuan;
Farhana, Rifat;
Yu, Haixiang;
Xiao, Yi

Publication type:

Article

Cell cycle regulated DNA methyltransferase: fluorescent tracking of a DNA strand-separation mechanism and identification of the responsible protein motif.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11589, doi. 10.1093/nar/gkaa844

By:

Konttinen, Olivia;
Carmody, Jason;
Pathuri, Sarath;
Anderson, Kyle;
Zhou, Xiaofeng;
Reich, Norbert

Publication type:

Article

DNA and RNA editing without sequence limitation using the flap endonuclease 1 guided by hairpin DNA probes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e117, doi. 10.1093/nar/gkaa843

By:

Tian, Kun;
Guo, Yongjian;
Zou, Bingjie;
Wang, Liang;
Zhang, Yun;
Qi, Zhen;
Zhou, Jieying;
Wang, Xiaotang;
Zhou, Guohua;
Wei, Libin;
Xu, Shu

Publication type:

Article

Conditional guide RNA through two intermediate hairpins for programmable CRISPR/Cas9 function: building regulatory connections between endogenous RNA expressions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11773, doi. 10.1093/nar/gkaa842

By:

Lin, Jiao;
Liu, Yan;
Lai, Peidong;
Ye, Huixia;
Xu, Liang

Publication type:

Article

Detection of genomic G-quadruplexes in living cells using a small artificial protein.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11706, doi. 10.1093/nar/gkaa841

By:

Zheng, Ke-wei;
Zhang, Jia-yu;
He, Yi-de;
Gong, Jia-yuan;
Wen, Cui-jiao;
Chen, Juan-nan;
Hao, Yu-hua;
Zhao, Yong;
Tan, Zheng

Publication type:

Article

The role of ZFP57 and additional KRAB-zinc finger proteins in the maintenance of human imprinted methylation and multi-locus imprinting disturbances.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11394, doi. 10.1093/nar/gkaa837

By:

Monteagudo-Sánchez, Ana;
Hernandez Mora, Jose Ramon;
Simon, Carlos;
Burton, Adam;
Tenorio, Jair;
Lapunzina, Pablo;
Clark, Stephen;
Esteller, Manel;
Kelsey, Gavin;
López-Siguero, Juan Pedro;
de Nanclares, Guiomar Perez;
Torres-Padilla, Maria-Elena;
Monk, David

Publication type:

Article

A combinatorial method to isolate short ribozymes from complex ribozyme libraries.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. e116, doi. 10.1093/nar/gkaa834

By:

Arriola, Joshua T;
Müller, Ulrich F

Publication type:

Article

SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11626, doi. 10.1093/nar/gkaa814

By:

Toki, Naoko;
Takahashi, Hazuki;
Sharma, Harshita;
Valentine, Matthew N Z;
Rahman, Ferdous-Ur M;
Zucchelli, Silvia;
Gustincich, Stefano;
Carninci, Piero

Publication type:

Article

Mechanisms of replication and repair in mitochondrial DNA deletion formation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11244, doi. 10.1093/nar/gkaa804

By:

Fontana, Gabriele A;
Gahlon, Hailey L

Publication type:

Article

Sperm histone H3 lysine 4 trimethylation is altered in a genetic mouse model of transgenerational epigenetic inheritance.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11380, doi. 10.1093/nar/gkaa712

By:

Lismer, Ariane;
Siklenka, Keith;
Lafleur, Christine;
Dumeaux, Vanessa;
Kimmins, Sarah

Publication type:

Article

Structural basis of the XPB helicase–Bax1 nuclease complex interacting with the repair bubble DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11695, doi. 10.1093/nar/gkaa801

By:

He, Feng;
DuPrez, Kevin;
Hilario, Eduardo;
Chen, Zhenhang;
Fan, Li

Publication type:

Article

The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11227, doi. 10.1093/nar/gkaa777

By:

Kumar, Namrata;
Raja, Sripriya;
Van Houten, Bennett

Publication type:

Article

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11215, doi. 10.1093/nar/gkaa618

By:

Yamada, Naomi;
Rossi, Matthew J;
Farrell, Nina;
Pugh, B Franklin;
Mahony, Shaun

Publication type:

Article

State changes of the HORMA protein ASY1 are mediated by an interplay between its closure motif and PCH2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11521, doi. 10.1093/nar/gkaa527

By:

Yang, Chao;
Hu, Bingyan;
Portheine, Stephan Michael;
Chuenban, Pichaporn;
Schnittger, Arp

Publication type:

Article