Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 19

Results: 47

CUBAP: an interactive web portal for analyzing codon usage biases across populations.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11030, doi. 10.1093/nar/gkaa863

By:

Hodgman, Matthew W;
Miller, Justin B;
Meurs, Taylor E;
Kauwe, John S K

Publication type:

Article

Asymmetrical effects of deafness-associated mitochondrial DNA 7516delA mutation on the processing of RNAs in the H-strand and L-strand polycistronic transcripts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11113, doi. 10.1093/nar/gkaa860

By:

Xiao, Yun;
Wang, Meng;
He, Qiufen;
Xu, Lei;
Zhang, Qinghai;
Meng, Feilong;
Jia, Zidong;
Zhang, Fengguo;
Wang, Haibo;
Guan, Min-Xin

Publication type:

Article

Senescence-activated enhancer landscape orchestrates the senescence-associated secretory phenotype in murine fibroblasts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10909, doi. 10.1093/nar/gkaa858

By:

Guan, Yiting;
Zhang, Chao;
Lyu, Guoliang;
Huang, Xiaoke;
Zhang, Xuebin;
Zhuang, Tenghan;
Jia, Lumeng;
Zhang, Lijun;
Zhang, Chen;
Li, Cheng;
Tao, Wei

Publication type:

Article

Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11054, doi. 10.1093/nar/gkaa855

By:

Yao, Jianyun;
Zhen, Xiangkai;
Tang, Kaihao;
Liu, Tianlang;
Xu, Xiaolong;
Chen, Zhe;
Guo, Yunxue;
Liu, Xiaoxiao;
Wood, Thomas K;
Ouyang, Songying;
Wang, Xiaoxue

Publication type:

Article

Understanding DNA interactions in crowded environments with a coarse-grained model.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10726, doi. 10.1093/nar/gkaa854

By:

Hong, Fan;
Schreck, John S;
Šulc, Petr

Publication type:

Article

Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10713, doi. 10.1093/nar/gkaa836

By:

Desai, Parth Rakesh;
Brahmachari, Sumitabha;
Marko, John F;
Das, Siddhartha;
Neuman, Keir C

Publication type:

Article

Cross-Inhibitor: a time-sensitive molecular circuit based on DNA strand displacement.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10691, doi. 10.1093/nar/gkaa835

By:

Liu, Chanjuan;
Liu, Yuan;
Zhu, Enqiang;
Zhang, Qiang;
Wei, Xiaopeng;
Wang, Bin

Publication type:

Article

HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10890, doi. 10.1093/nar/gkaa832

By:

Srinivasachar Badarinarayan, Smitha;
Shcherbakova, Irina;
Langer, Simon;
Koepke, Lennart;
Preising, Andrea;
Hotter, Dominik;
Kirchhoff, Frank;
Sparrer, Konstantin M J;
Schotta, Gunnar;
Sauter, Daniel

Publication type:

Article

Structural and functional insights into Archaeoglobus fulgidus m2G10 tRNA methyltransferase Trm11 and its Trm112 activator.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11068, doi. 10.1093/nar/gkaa830

By:

Wang, Can;
van Tran, Nhan;
Jactel, Vincent;
Guérineau, Vincent;
Graille, Marc

Publication type:

Article

Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e114, doi. 10.1093/nar/gkaa829

By:

Prodanov, Timofey;
Bansal, Vikas

Publication type:

Article

ERH facilitates microRNA maturation through the interaction with the N-terminus of DGCR8.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11097, doi. 10.1093/nar/gkaa827

By:

Kwon, S Chul;
Jang, Harim;
Shen, Siyuan;
Baek, S Chan;
Kim, Kijun;
Yang, Jihye;
Kim, Jeesoo;
Kim, Jong-Seo;
Wang, Suman;
Shi, Yunyu;
Li, Fudong;
Kim, V Narry

Publication type:

Article

Interactions of replication initiator RctB with single- and double-stranded DNA in origin opening of Vibrio cholerae chromosome 2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11016, doi. 10.1093/nar/gkaa826

By:

Chatterjee, Soniya;
Jha, Jyoti K;
Ciaccia, Peter;
Venkova, Tatiana;
Chattoraj, Dhruba K

Publication type:

Article

Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10702, doi. 10.1093/nar/gkaa825

By:

Spisak, Natanael;
Walczak, Aleksandra M;
Mora, Thierry

Publication type:

Article

Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11040, doi. 10.1093/nar/gkaa824

By:

Ben-Assa, Nadav;
Coyne, Michael J;
Fomenkov, Alexey;
Livny, Jonathan;
Robins, William P;
Muniesa, Maite;
Carey, Vincent;
Carasso, Shaqed;
Gefen, Tal;
Jofre, Juan;
Roberts, Richard J;
Comstock, Laurie E;
Geva-Zatorsky, Naama

Publication type:

Article

Stabilization of G-quadruplex DNA structures in Schizosaccharomyces pombe causes single-strand DNA lesions and impedes DNA replication.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10998, doi. 10.1093/nar/gkaa820

By:

Obi, Ikenna;
Rentoft, Matilda;
Singh, Vandana;
Jamroskovic, Jan;
Chand, Karam;
Chorell, Erik;
Westerlund, Fredrik;
Sabouri, Nasim

Publication type:

Article

FACT and Ash1 promote long-range and bidirectional nucleosome eviction at the HO promoter.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10877, doi. 10.1093/nar/gkaa819

By:

Yu, Yaxin;
Yarrington, Robert M;
Stillman, David J

Publication type:

Article

MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10867, doi. 10.1093/nar/gkaa817

By:

Sumida, Noriyuki;
Sifakis, Emmanouil G;
Kiani, Narsis A;
Ronnegren, Anna Lewandowska;
Scholz, Barbara A;
Vestlund, Johanna;
Gomez-Cabrero, David;
Tegner, Jesper;
Göndör, Anita;
Ohlsson, Rolf

Publication type:

Article

METTL3 counteracts premature aging via m6A-dependent stabilization of MIS12 mRNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11083, doi. 10.1093/nar/gkaa816

By:

Wu, Zeming;
Shi, Yue;
Lu, Mingming;
Song, Moshi;
Yu, Zihui;
Wang, Jilu;
Wang, Si;
Ren, Jie;
Yang, Yun-Gui;
Liu, Guang-Hui;
Zhang, Weiqi;
Ci, Weimin;
Qu, Jing

Publication type:

Article

ZFAT binds to centromeres to control noncoding RNA transcription through the KAT2B–H4K8ac–BRD4 axis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10848, doi. 10.1093/nar/gkaa815

By:

Ishikura, Shuhei;
Nakabayashi, Kazuhiko;
Nagai, Masayoshi;
Tsunoda, Toshiyuki;
Shirasawa, Senji

Publication type:

Article

Horizontally acquired regulatory gene activates ancestral regulatory system to promote Salmonella virulence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10832, doi. 10.1093/nar/gkaa813

By:

Choi, Jeongjoon;
Groisman, Eduardo A

Publication type:

Article

A hand-off of DNA between archaeal polymerases allows high-fidelity replication to resume at a discrete intermediate three bases past 8-oxoguanine.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10986, doi. 10.1093/nar/gkaa803

By:

Cranford, Matthew T;
Kaszubowski, Joseph D;
Trakselis, Michael A

Publication type:

Article

Stable gene expression for normalisation and single-sample scoring.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e113, doi. 10.1093/nar/gkaa802

By:

Bhuva, Dharmesh D;
Cursons, Joseph;
Davis, Melissa J

Publication type:

Article

Evolution of a highly functional circular DNA aptamer in serum.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10680, doi. 10.1093/nar/gkaa800

By:

Mao, Yu;
Gu, Jimmy;
Chang, Dingran;
Wang, Lei;
Yao, Lili;
Ma, Qihui;
Luo, Zhaofeng;
Qu, Hao;
Li, Yingfu;
Zheng, Lei

Publication type:

Article

The HMGB chromatin protein Nhp6A can bypass obstacles when traveling on DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10820, doi. 10.1093/nar/gkaa799

By:

Kamagata, Kiyoto;
Ouchi, Kana;
Tan, Cheng;
Mano, Eriko;
Mandali, Sridhar;
Wu, Yining;
Takada, Shoji;
Takahashi, Satoshi;
Johnson, Reid C

Publication type:

Article

Rewiring of growth-dependent transcription regulation by a point mutation in region 1.1 of the housekeeping σ factor.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10802, doi. 10.1093/nar/gkaa798

By:

Pletnev, Philipp;
Pupov, Danil;
Pshanichnaya, Lizaveta;
Esyunina, Daria;
Petushkov, Ivan;
Nesterchuk, Mikhail;
Osterman, Ilya;
Rubtsova, Maria;
Mardanov, Andrey;
Ravin, Nikolai;
Sergiev, Petr;
Kulbachinskiy, Andrey;
Dontsova, Olga

Publication type:

Article

Reversible regulation of conjugation of Bacillus subtilis plasmid pLS20 by the quorum sensing peptide responsive anti-repressor RappLS20.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10785, doi. 10.1093/nar/gkaa797

By:

Singh, Praveen K;
Serrano, Ester;
Ramachandran, Gayetri;
Miguel-Arribas, Andrés;
Gago-Cordoba, César;
Val-Calvo, Jorge;
López-Pérez, Arancha;
Alfonso, Carlos;
Wu, Ling Juan;
Luque-Ortega, Juan R;
Meijer, Wilfried J J

Publication type:

Article

A C. elegans model for neurodegeneration in Cockayne syndrome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10973, doi. 10.1093/nar/gkaa795

By:

Lopes, Amanda F C;
Bozek, Katarzyna;
Herholz, Marija;
Trifunovic, Aleksandra;
Rieckher, Matthias;
Schumacher, Björn

Publication type:

Article

A genetic screen for suppressors of hyper-repression of the fission yeast PHO regulon by Pol2 CTD mutation T4A implicates inositol 1-pyrophosphates as agonists of precocious lncRNA transcription termination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10739, doi. 10.1093/nar/gkaa776

By:

Garg, Angad;
Shuman, Stewart;
Schwer, Beate

Publication type:

Article

Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e112, doi. 10.1093/nar/gkaa792

By:

Gyllborg, Daniel;
Langseth, Christoffer Mattsson;
Qian, Xiaoyan;
Choi, Eunkyoung;
Salas, Sergio Marco;
Hilscher, Markus M;
Lein, Ed S;
Nilsson, Mats

Publication type:

Article

Mechanism of efficient double-strand break repair by a long non-coding RNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10953, doi. 10.1093/nar/gkaa784

By:

Thapar, Roopa;
Wang, Jing L;
Hammel, Michal;
Ye, Ruiqiong;
Liang, Ke;
Sun, Chengcao;
Hnizda, Ales;
Liang, Shikang;
Maw, Su S;
Lee, Linda;
Villarreal, Heather;
Forrester, Isaac;
Fang, Shujuan;
Tsai, Miaw-Sheue;
Blundell, Tom L;
Davis, Anthony J;
Lin, Chunru;
Lees-Miller, Susan P;
Strick, Terence R;
Tainer, John A

Publication type:

Article

A high-throughput alpha particle irradiation system for monitoring DNA damage repair, genome instability and screening in human cell and yeast model systems.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e111, doi. 10.1093/nar/gkaa782

By:

Stanley, Fintan K T;
Berger, N Daniel;
Pearson, Dustin D;
Danforth, John M;
Morrison, Hali;
Johnston, James E;
Warnock, Tyler S;
Brenner, Darren R;
Chan, Jennifer A;
Pierce, Greg;
Cobb, Jennifer A;
Ploquin, Nicolas P;
Goodarzi, Aaron A

Publication type:

Article

NuA3 HAT antagonizes the Rpd3S and Rpd3L HDACs to optimize mRNA and lncRNA expression dynamics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10753, doi. 10.1093/nar/gkaa781

By:

Kim, Ji Hyun;
Yoon, Chae Young;
Jun, Yukyung;
Lee, Bo Bae;
Lee, Ji Eun;
Ha, So Dam;
Woo, Hyeonju;
Choi, Ahyoung;
Lee, Sanghyuk;
Jeong, Woojin;
Kim, Ji Hyung;
Kim, TaeSoo

Publication type:

Article

Strict conformational demands of RNA cleavage in bulge-loops created by peptidyl-oligonucleotide conjugates.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10662, doi. 10.1093/nar/gkaa780

By:

Staroseletz, Yaroslav;
Amirloo, Bahareh;
Williams, Aled;
Lomzov, Alexander;
Burusco, Kepa K;
Clarke, David J;
Brown, Tom;
Zenkova, Marina A;
Bichenkova, Elena V

Publication type:

Article

An H3K4me3 reader, BAP18 as an adaptor of COMPASS-like core subunits co-activates ERα action and associates with the sensitivity of antiestrogen in breast cancer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10768, doi. 10.1093/nar/gkaa787

By:

Sun, Ge;
Wang, Chunyu;
Wang, Shengli;
Sun, Hongmiao;
Zeng, Kai;
Zou, Renlong;
Lin, Lin;
Liu, Wei;
Sun, Ning;
Song, Huijuan;
Liu, Wensu;
Zhou, Tingting;
Jin, Feng;
Shan, Zhongyan;
Zhao, Yue

Publication type:

Article

Molecular determinants of MED1 interaction with the DNA bound VDR–RXR heterodimer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11199, doi. 10.1093/nar/gkaa775

By:

Belorusova, Anna Y;
Bourguet, Maxime;
Hessmann, Steve;
Chalhoub, Sandra;
Kieffer, Bruno;
Cianférani, Sarah;
Rochel, Natacha

Publication type:

Article

Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11185, doi. 10.1093/nar/gkaa773

By:

Liu, Nan;
Dong, Xiaolong;
Hu, Cuixia;
Zeng, Jianwei;
Wang, Jiawei;
Wang, Jia;
Wang, Hong-Wei;
Belfort, Marlene

Publication type:

Article

Crystal structure of the Cenp-HIKHead-TW sub-module of the inner kinetochore CCAN complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11172, doi. 10.1093/nar/gkaa772

By:

Zhang, Ziguo;
Bellini, Dom;
Barford, David

Publication type:

Article

HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e110, doi. 10.1093/nar/gkaa769

By:

Marchand, Virginie;
Pichot, Florian;
Neybecker, Paul;
Ayadi, Lilia;
Bourguignon-Igel, Valérie;
Wacheul, Ludivine;
Lafontaine, Denis L J;
Pinzano, Astrid;
Helm, Mark;
Motorin, Yuri

Publication type:

Article

A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. e109, doi. 10.1093/nar/gkaa767

By:

Shi, Xingjie;
Chai, Xiaoran;
Yang, Yi;
Cheng, Qing;
Jiao, Yuling;
Chen, Haoyue;
Huang, Jian;
Yang, Can;
Liu, Jin

Publication type:

Article

Ribosomal stress-surveillance: three pathways is a magic number.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10648, doi. 10.1093/nar/gkaa757

By:

Vind, Anna Constance;
Genzor, Aitana Victoria;
Bekker-Jensen, Simon

Publication type:

Article

CK2 kinase-mediated PHF8 phosphorylation controls TopBP1 stability to regulate DNA replication.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10940, doi. 10.1093/nar/gkaa756

By:

Feng, Haihua;
Lu, Jingchen;
Song, Xiaotian;
Thongkum, Angkana;
Zhang, Fan;
Lou, Lihong;
Reizes, Ofer;
Almasan, Alexandru;
Gong, Zihua

Publication type:

Article

Coexistence of two quadruplex–duplex hybrids in the PIM1 gene.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11162, doi. 10.1093/nar/gkaa752

By:

Tan, Derrick J Y;
Winnerdy, Fernaldo Richtia;
Lim, Kah Wai;
Phan, Anh Tuân

Publication type:

Article

Revisiting 3D chromatin architecture in cancer development and progression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10632, doi. 10.1093/nar/gkaa747

By:

Feng, Yuliang;
Pauklin, Siim

Publication type:

Article

NBS1 interacts with Notch signaling in neuronal homeostasis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10924, doi. 10.1093/nar/gkaa716

By:

Zhou, Zhong-Wei;
Kirtay, Murat;
Schneble, Nadine;
Yakoub, George;
Ding, Mingmei;
Rüdiger, Tina;
Siniuk, Kanstantsin;
Lu, Ruiqing;
Jiang, Yi-Nan;
Li, Tang-Liang;
Kaether, Christoph;
Barzilai, Ari;
Wang, Zhao-Qi

Publication type:

Article

Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11130, doi. 10.1093/nar/gkaa494

By:

Ptacek, Jakub;
Zhang, Dong;
Qiu, Liming;
Kruspe, Sven;
Motlova, Lucia;
Kolenko, Petr;
Novakova, Zora;
Shubham, Shambhavi;
Havlinova, Barbora;
Baranova, Petra;
Chen, Shi-Jie;
Zou, Xiaoqin;
Giangrande, Paloma;
Barinka, Cyril

Publication type:

Article

Structural basis of DNA replication origin recognition by human Orc6 protein binding with DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 11146, doi. 10.1093/nar/gkaa751

By:

Xu, Naining;
You, Yingying;
Liu, Changdong;
Balasov, Maxim;
Lun, Lee Tung;
Geng, Yanyan;
Fung, Chun Po;
Miao, Haitao;
Tian, Honglei;
Choy, To To;
Shi, Xiao;
Fan, Zhuming;
Zhou, Bo;
Akhmetova, Katarina;
Din, Rahman Ud;
Yang, Hongyu;
Hao, Quan;
Qian, Peiyuan;
Chesnokov, Igor;
Zhu, Guang

Publication type:

Article

Prion protein lowering is a disease-modifying therapy across prion disease stages, strains and endpoints.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 19, p. 10615, doi. 10.1093/nar/gkaa616

By:

Minikel, Eric Vallabh;
Zhao, Hien T;
Le, Jason;
O'Moore, Jill;
Pitstick, Rose;
Graffam, Samantha;
Carlson, George A;
Kavanaugh, Michael P;
Kriz, Jasna;
Kim, Jae Beom;
Ma, Jiyan;
Wille, Holger;
Aiken, Judd;
McKenzie, Deborah;
Doh-ura, Katsumi;
Beck, Matthew;
O'Keefe, Rhonda;
Stathopoulos, Jacquelyn;
Caron, Tyler;
Schreiber, Stuart L

Publication type:

Article