Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 18

Results: 47

NCBP3 positively impacts mRNA biogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10413, doi. 10.1093/nar/gkaa744

By:

Yuhui Dou;
Barbosa, Isabelle;
Hua Jiang;
Iasillo, Claudia;
Molloy, Kelly R.;
Schulze, Wiebke Manuela;
Cusack, Stephen;
Schmid, Manfred;
Le Hir, Hervé;
LaCava, John;
Jensen, Torben Heick

Publication type:

Article

R-CHIE: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa708

By:

Tsybulskyi, Volodymyr;
Mounir, Mohamed;
Meyer, Irmtraud M.

Publication type:

Article

Elements at the 5′ end of Xist harbor SPEN-independent transcriptional antiterminator activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10500, doi. 10.1093/nar/gkaa789

By:

Trotman, Jackson B.;
Lee, David M.;
Cherney, Rachel E.;
Kim, Susan O.;
Inoue, Kaoru;
Schertzer, Megan D.;
Bischoff, Steven R.;
Cowley, Dale O.;
Calabrese, J. Mauro

Publication type:

Article

Molecular structure of a U•A-U-rich RNA triple helix with 11 consecutive base triples.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10614, doi. 10.1093/nar/gkaa770

By:

Ruszkowska, Agnieszka;
Ruszkowski, Milosz;
Hulewicz, Jacob P.;
Dauter, Zbigniew;
Brown, Jessica A.

Publication type:

Article

Programmable cross-ribosome-binding sites to fine-tune the dynamic range of transcription factor-based biosensor.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10602, doi. 10.1093/nar/gkaa786

By:

Nana Ding;
Zhenqi Yuan;
Xiaojuan Zhang;
Jing Chen;
Shenghu Zhou;
Yu Deng

Publication type:

Article

Enhancing site-specific DNA integration by a Cas9 nuclease fused with a DNA donor-binding domain.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10590, doi. 10.1093/nar/gkaa779

By:

Shufeng Ma;
Xinlong Wang;
Yongfei Hu;
Jie Lv;
Chengfang Liu;
Kaitong Liao;
Xiaohua Guo;
Dong Wang;
Ying Lin;
Zhili Rong

Publication type:

Article

Affinity proteomic dissection of the human nuclear cap-binding complex interactome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10456, doi. 10.1093/nar/gkaa743

By:

Yuhui Dou;
Kalmykova, Svetlana;
Pashkova, Maria;
Oghbaie, Mehrnoosh;
Hua Jiang;
Molloy, Kelly R.;
Chait, Brian T.;
Rout, Michael P.;
Fenyö, David;
Jensen, Torben Heick;
Altukhov, Ilya;
LaCava, John

Publication type:

Article

DNA targeting by subtype I-D CRISPR–Cas shows type I and type III features.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10470, doi. 10.1093/nar/gkaa749

By:

Jinzhong Lin;
Fuglsang, Anders;
Kjeldsen, Anders Lynge;
Sun, Kaiyan;
Bhoobalan-Chitty, Yuvaraj;
Xu Peng

Publication type:

Article

Influenza A virus co-opts ERI1 exonuclease bound to histone mRNA to promote viral transcription.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10428, doi. 10.1093/nar/gkaa771

By:

Declercq, Marion;
Biquand, Elise;
Karim, Marwah;
Pietrosemoli, Natalia;
Jacob, Yves;
Demeret, Caroline;
Barbezange, Cyril;
van der Werf, Sylvie

Publication type:

Article

Duplex formation in a G-quadruplex bulge.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10567, doi. 10.1093/nar/gkaa738

By:

Thi Quynh Ngoc Nguyen;
KahWai Lim;
Anh Tuên Phan

Publication type:

Article

Post-translational modifications of hnRNP A1 differentially modulate retroviral IRES-mediated translation initiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10479, doi. 10.1093/nar/gkaa765

By:

Barrera, Aldo;
Ramos, Hade;
Vera-Otarola, Jorge;
Fernández-García, Leandro;
Angulo, Jenniffer;
Olguín, Valeria;
Pino, Karla;
Mouland, Andrew J.;
López-Lastra, Marcelo

Publication type:

Article

SpaGE: Spatial Gene Enhancement using scRNA-seq.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa740

By:

Abdelaal, Tamim;
Mourragui, Soufiane;
Mahfouz, Ahmed;
Reinders, Marcel J.T.

Publication type:

Article

A ribosomal RNA fragment with 2′,3′-cyclic phosphate and GTP-binding activity acts as RIG-I ligand.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10397, doi. 10.1093/nar/gkaa739

By:

Jung, Stephanie;
von Thülen, Tina;
Yang, Ines;
Laukemper, Viktoria;
Rupf, Benjamin;
Janga, Harshavardhan;
Panagiotidis, Georgios-Dimitrios;
Schoen, Andreas;
Nicolai, Marina;
Schulte, Leon N.;
Obermann, Hannah-Lena;
Weber, Friedemann;
Kaufmann, Andreas;
Bauer, Stefan

Publication type:

Article

Unbiased investigation of specificities of prime editing systems in human cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10576, doi. 10.1093/nar/gkaa764

By:

Do Yon Kim;
Su Bin Moon;
Jeong-Heon Ko;
Yong-Sam Kim;
Daesik Kim

Publication type:

Article

eIF4G-driven translation initiation of downstream ORFs in mammalian cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10441, doi. 10.1093/nar/gkaa728

By:

Risa Nobuta;
Kodai Machida;
Misaki Sato;
Satoshi Hashimoto;
Yasuhito Toriumi;
Shizuka Nakajima;
Daiki Suto;
Hiroaki Imataka;
Toshifumi Inada

Publication type:

Article

DGINN, an automated and highly-flexible pipeline for the detection of genetic innovations on protein-coding genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa680

By:

Picard, Lea;
Ganivet, Quentin;
Allatif, Omran;
Cimarelli, Andrea;
Guéguen, Laurent;
Etienne, Lucie

Publication type:

Article

A super-sensitive auxin-inducible degron system with an engineered auxin-TIR1 pair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa748

By:

Kohei Nishimura;
Ryotaro Yamada;
Shinya Hagihara;
Rie Iwasaki;
Naoyuki Uchida;
Takumi Kamura;
Koji Takahashi;
Torii, Keiko U.;
Tatsuo Fukagawa

Publication type:

Article

Locked nucleic acid building blocks as versatile tools for advanced G-quadruplex design.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10555, doi. 10.1093/nar/gkaa720

By:

Haase, Linn;
Weisz, Klaus

Publication type:

Article

Rapid, robust plasmid verification by de novo assembly of short sequencing reads.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa727

By:

Gallegos, Jenna E.;
Rogers, Mark F.;
Cialek, Charlotte A.;
Peccoud, Jean

Publication type:

Article

Weak binding to the A2RE RNA rigidifies hnRNPA2 RRMs and reduces liquid–liquid phase separation and aggregation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10542, doi. 10.1093/nar/gkaa710

By:

Ryan, Veronica H.;
Watters, Scott;
Amaya, Joshua;
Khatiwada, Balabhadra;
Venditti, Vincenzo;
Naik, Mandar T.;
Fawzi, Nicolas L.

Publication type:

Article

Do the P1 and P2 hairpins of the Guanidine-II riboswitch interact?

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10518, doi. 10.1093/nar/gkaa703

By:

Wuebben, Christine;
Vicino, Maria F.;
Mueller, Marcel;
Schiemann, Olav

Publication type:

Article

Distinct oligomeric structures of the YoeB–YefM complex provide insights into the conditional cooperativity of type II toxin–antitoxin system.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10527, doi. 10.1093/nar/gkaa706

By:

Lu Xue;
Jian Yue;
Jiyuan Ke;
Khan, Muhammad Hidayatullah;
Wen Wen;
Baolin Sun;
Zhongliang Zhu;
Liwen Niu

Publication type:

Article

TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 1, doi. 10.1093/nar/gkaa691

By:

Jingwen Wang;
Bingnan Li;
Marques, Sueli;
Steinmetz, Lars M.;
Wu Wei;
Pelechano, Vicent

Publication type:

Article

Quantitative and time-resolved miRNA pattern of early human T cell activation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10164, doi. 10.1093/nar/gkaa788

By:

Diener, Caroline;
Hart, Martin;
Kehl, Tim;
Rheinheimer, Stefanie;
Ludwig, Nicole;
Krammes, Lena;
Pawusch, Sarah;
Lenhof, Kerstin;
Tänzer, Tanja;
Schub, David;
Sester, Martina;
Walch-Rückheim, Barbara;
Keller, Andreas;
Lenhof, Hans-Peter;
Meese, Eckart

Publication type:

Article

Periphilin self-association underpins epigenetic silencing by the HUSH complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10313, doi. 10.1093/nar/gkaa785

By:

Prigozhin, Daniil M;
Douse, Christopher H;
Farleigh, Laura E;
Albecka, Anna;
Tchasovnikarova, Iva A;
Timms, Richard T;
Oda, Shun-ichiro;
Adolf, Frank;
Freund, Stefan M V;
Maslen, Sarah;
Lehner, Paul J;
Modis, Yorgo

Publication type:

Article

The Bitome: digitized genomic features reveal fundamental genome organization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10157, doi. 10.1093/nar/gkaa774

By:

Lamoureux, Cameron R;
Choudhary, Kumari Sonal;
King, Zachary A;
Sandberg, Troy E;
Gao, Ye;
Sastry, Anand V;
Phaneuf, Patrick V;
Choe, Donghui;
Cho, Byung-Kwan;
Palsson, Bernhard O

Publication type:

Article

Epigenetic silencing of clustered tRNA genes in Arabidopsis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10297, doi. 10.1093/nar/gkaa766

By:

Hummel, Guillaume;
Berr, Alexandre;
Graindorge, Stéfanie;
Cognat, Valérie;
Ubrig, Elodie;
Pflieger, David;
Molinier, Jean;
Drouard, Laurence

Publication type:

Article

eIF2α interactions with mRNA control accurate start codon selection by the translation preinitiation complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10280, doi. 10.1093/nar/gkaa761

By:

Thakur, Anil;
Gaikwad, Swati;
Vijjamarri, Anil K;
Hinnebusch, Alan G

Publication type:

Article

Diversity and evolution of B-family DNA polymerases.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10142, doi. 10.1093/nar/gkaa760

By:

Kazlauskas, Darius;
Krupovic, Mart;
Guglielmini, Julien;
Forterre, Patrick;
Venclovas, Česlovas

Publication type:

Article

Specific suppression of D-RNA G-quadruplex–protein interaction with an L-RNA aptamer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10125, doi. 10.1093/nar/gkaa759

By:

Umar, Mubarak I;
Kwok, Chun Kit

Publication type:

Article

Readthrough of stop codons under limiting ABCE1 concentration involves frameshifting and inhibits nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10259, doi. 10.1093/nar/gkaa758

By:

Annibaldis, Giuditta;
Domanski, Michal;
Dreos, René;
Contu, Lara;
Carl, Sarah;
Kläy, Nina;
Mühlemann, Oliver

Publication type:

Article

Synthesis, chirality-dependent conformational and biological properties of siRNAs containing 5′-(R)- and 5′-(S)-C-methyl-guanosine.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10101, doi. 10.1093/nar/gkaa750

By:

Mikami, Atsushi;
Erande, Namrata;
Matsuda, Shigeo;
Kel'in, Alexander;
Woods, Lauren Blair;
Chickering, Tyler;
Pallan, Pradeep S;
Schlegel, Mark K;
Zlatev, Ivan;
Egli, Martin;
Manoharan, Muthiah

Publication type:

Article

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10241, doi. 10.1093/nar/gkaa745

By:

Reim, Natalia I;
Chuang, James;
Jain, Dhawal;
Alver, Burak H;
Park, Peter J;
Winston, Fred

Publication type:

Article

Replisome bypass of transcription complexes and R-loops.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10353, doi. 10.1093/nar/gkaa741

By:

Brüning, Jan-Gert;
Marians, Kenneth J

Publication type:

Article

Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10087, doi. 10.1093/nar/gkaa737

By:

Mao, Song;
Sekula, Bartosz;
Ruszkowski, Milosz;
Ranganathan, Srivathsan V;
Haruehanroengra, Phensinee;
Wu, Ying;
Shen, Fusheng;
Sheng, Jia

Publication type:

Article

Embryonic erythropoiesis and hemoglobin switching require transcriptional repressor ETO2 to modulate chromatin organization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10226, doi. 10.1093/nar/gkaa736

By:

Guo, Xiang;
Plank-Bazinet, Jennifer;
Krivega, Ivan;
Dale, Ryan K;
Dean, Ann

Publication type:

Article

Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10383, doi. 10.1093/nar/gkaa735

By:

Kot, Witold;
Olsen, Nikoline S;
Nielsen, Tue K;
Hutinet, Geoffrey;
de Crécy-Lagard, Valérie;
Cui, Liang;
Dedon, Peter C;
Carstens, Alexander B;
Moineau, Sylvain;
Swairjo, Manal A;
Hansen, Lars H

Publication type:

Article

Hedgehog signaling enables repair of ribosomal DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10342, doi. 10.1093/nar/gkaa733

By:

Lama-Sherpa, Tshering D;
Lin, Victor T G;
Metge, Brandon J;
Weeks, Shannon E;
Chen, Dongquan;
Samant, Rajeev S;
Shevde, Lalita A

Publication type:

Article

Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10211, doi. 10.1093/nar/gkaa732

By:

Chen, Fuquan;
Zhang, Weiyu;
Xie, Dan;
Gao, Tingting;
Dong, Zhiqiang;
Lu, Xinyi

Publication type:

Article

Comprehensive classification of ABC ATPases and their functional radiation in nucleoprotein dynamics and biological conflict systems.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10045, doi. 10.1093/nar/gkaa726

By:

Krishnan, Arunkumar;
Burroughs, A Maxwell;
Iyer, Lakshminarayan M;
Aravind, L

Publication type:

Article

LSD1 prevents aberrant heterochromatin formation in Neurospora crassa.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10199, doi. 10.1093/nar/gkaa724

By:

Storck, William K;
Bicocca, Vincent T;
Rountree, Michael R;
Honda, Shinji;
Ormsby, Tereza;
Selker, Eric U

Publication type:

Article

Enhanced DNA repair by DNA photolyase bearing an artificial light-harvesting chromophore.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10076, doi. 10.1093/nar/gkaa719

By:

Terai, Yuma;
Sato, Ryuma;
Matsumura, Risa;
Iwai, Shigenori;
Yamamoto, Junpei

Publication type:

Article

Redefining the H-NS protein family: a diversity of specialized core and accessory forms exhibit hierarchical transcriptional network integration.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10184, doi. 10.1093/nar/gkaa709

By:

Fitzgerald, Stephen;
Kary, Stefani C;
Alshabib, Ebtihal Y;
MacKenzie, Keith D;
Stoebel, Daniel M;
Chao, Tzu-Chiao;
Cameron, Andrew D S

Publication type:

Article

Comprehensive analysis of translation from overexpressed circular RNAs reveals pervasive translation from linear transcripts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10368, doi. 10.1093/nar/gkaa704

By:

Ho-Xuan, Hung;
Glažar, Petar;
Latini, Claudia;
Heizler, Kevin;
Haase, Jacob;
Hett, Robert;
Anders, Marvin;
Weichmann, Franziska;
Bruckmann, Astrid;
Van den Berg, Debbie;
Hüttelmaier, Stefan;
Rajewsky, Nikolaus;
Hackl, Christina;
Meister, Gunter

Publication type:

Article

Biochemical and structural basis for YTH domain of human YTHDC1 binding to methylated adenine in DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10329, doi. 10.1093/nar/gkaa604

By:

Woodcock, Clayton B;
Horton, John R;
Zhou, Jujun;
Bedford, Mark T;
Blumenthal, Robert M;
Zhang, Xing;
Cheng, Xiaodong

Publication type:

Article

PARP1 catalytic variants reveal branching and chain length-specific functions of poly(ADP-ribose) in cellular physiology and stress response.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10015, doi. 10.1093/nar/gkaa590

By:

Aberle, Lisa;
Krüger, Annika;
Reber, Julia M;
Lippmann, Michelle;
Hufnagel, Matthias;
Schmalz, Michael;
Trussina, Irmela R E A;
Schlesiger, Sarah;
Zubel, Tabea;
Schütz, Karina;
Marx, Andreas;
Hartwig, Andrea;
Ferrando-May, Elisa;
Bürkle, Alexander;
Mangerich, Aswin

Publication type:

Article

Beta class amino methyltransferases from bacteria to humans: evolution and structural consequences.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 18, p. 10034, doi. 10.1093/nar/gkaa446

By:

Woodcock, Clayton B;
Horton, John R;
Zhang, Xing;
Blumenthal, Robert M;
Cheng, Xiaodong

Publication type:

Article