Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 17

Results: 45

FASTQINS and ANUBIS: two bioinformatic tools to explore facts and artifacts in transposon sequencing and essentiality studies.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 1, doi. 10.1093/nar/gkaa679

By:

Miravet-Verde, Samuel;
Burgos, Raul;
Delgado, Javier;
Lluch-Senar, Maria;
Serrano, Luis

Publication type:

Article

A multiplexed bioluminescent reporter for sensitive and non-invasive tracking of DNA double strand break repair dynamics in vitro and in vivo.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 1, doi. 10.1093/nar/gkaa669

By:

Jasper Che-Yung Chien;
Tabet, Elie;
Pinkham, Kelsey;
da Hora, Cintia Carla;
Jason Cheng-Yu Chang;
Lin, Steven;
Badr, Christian E.;
Lai, Charles Pin-Kuang

Publication type:

Article

SPRINT: a Cas13a-based platform for detection of small molecules.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 1, doi. 10.1093/nar/gkaa673

By:

Iwasaki, Roman S.;
Batey, Robert T.

Publication type:

Article

NetCore: a network propagation approach using node coreness.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 1, doi. 10.1093/nar/gkaa639

By:

Barel, Gal;
Herwig, Ralf

Publication type:

Article

SPOC1 modulates DNA repair by regulating key determinants of chromatin compaction and DNA damage response.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 10013, doi. 10.1093/nar/gkaa754

By:

Mund, Andreas;
Schubert, Tobias;
Staege, Hannah;
Kinkley, Sarah;
Reumann, Kerstin;
Kriegs, Malte;
Fritsch, Lauriane;
Battisti, Valentine;
Ait-Si-Ali, Slimane;
Hoffbeck, Anne-Sophie;
Soutoglou, Evi;
Will, Hans

Publication type:

Article

Engineered signal-coupled inducible promoters: measuring the apparent RNA-polymerase resource budget.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9995, doi. 10.1093/nar/gkaa734

By:

Davey, James A;
Wilson, Corey J

Publication type:

Article

Genome-wide binding of SEPALLATA3 and AGAMOUS complexes determined by sequential DNA-affinity purification sequencing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9637, doi. 10.1093/nar/gkaa729

By:

Lai, Xuelei;
Stigliani, Arnaud;
Lucas, Jérémy;
Hugouvieux, Véronique;
Parcy, François;
Zubieta, Chloe

Publication type:

Article

Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9505, doi. 10.1093/nar/gkaa725

By:

Sha, Yutong;
Wang, Shuxiong;
Zhou, Peijie;
Nie, Qing

Publication type:

Article

ATM antagonizes NHEJ proteins assembly and DNA-ends synapsis at single-ended DNA double strand breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9710, doi. 10.1093/nar/gkaa723

By:

Britton, Sébastien;
Chanut, Pauline;
Delteil, Christine;
Barboule, Nadia;
Frit, Philippe;
Calsou, Patrick

Publication type:

Article

Clinical PARP inhibitors do not abrogate PARP1 exchange at DNA damage sites in vivo.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9694, doi. 10.1093/nar/gkaa718

By:

Shao, Zhengping;
Lee, Brian J;
Rouleau-Turcotte, Élise;
Langelier, Marie-France;
Lin, Xiaohui;
Estes, Verna M;
Pascal, John M;
Zha, Shan

Publication type:

Article

Systematic screening of CTCF binding partners identifies that BHLHE40 regulates CTCF genome-wide distribution and long-range chromatin interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9606, doi. 10.1093/nar/gkaa705

By:

Hu, Gongcheng;
Dong, Xiaotao;
Gong, Shixin;
Song, Yawei;
Hutchins, Andrew P;
Yao, Hongjie

Publication type:

Article

Some ASOs that bind in the coding region of mRNAs and induce RNase H1 cleavage can cause increases in the pre-mRNAs that may blunt total activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9840, doi. 10.1093/nar/gkaa715

By:

Liang, Xue-hai;
Nichols, Joshua G;
De Hoyos, Cheryl L;
Crooke, Stanley T

Publication type:

Article

Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9859, doi. 10.1093/nar/gkaa714

By:

Cheng, Kaiying;
Xu, Ying;
Chen, Xuanyi;
Lu, Huizhi;
He, Yuan;
Wang, Liangyan;
Hua, Yuejin

Publication type:

Article

Recent advances in the nucleolar responses to DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9449, doi. 10.1093/nar/gkaa713

By:

Korsholm, Lea Milling;
Gál, Zita;
Nieto, Blanca;
Quevedo, Oliver;
Boukoura, Stavroula;
Lund, Casper Carstens;
Larsen, Dorthe Helena

Publication type:

Article

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR–RXR.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9969, doi. 10.1093/nar/gkaa697

By:

Osz, Judit;
McEwen, Alastair G;
Bourguet, Maxime;
Przybilla, Frédéric;
Peluso-Iltis, Carole;
Poussin-Courmontagne, Pierre;
Mély, Yves;
Cianférani, Sarah;
Jeffries, Cy M;
Svergun, Dmitri I;
Rochel, Natacha

Publication type:

Article

Ribosomal stalk proteins RPLP1 and RPLP2 promote biogenesis of flaviviral and cellular multi-pass transmembrane proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9872, doi. 10.1093/nar/gkaa717

By:

Campos, Rafael K;
Wijeratne, H R Sagara;
Shah, Premal;
Garcia-Blanco, Mariano A;
Bradrick, Shelton S

Publication type:

Article

The conserved ribonuclease aCPSF1 triggers genome-wide transcription termination of Archaea via a 3′-end cleavage mode.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9589, doi. 10.1093/nar/gkaa702

By:

Yue, Lei;
Li, Jie;
Zhang, Bing;
Qi, Lei;
Li, Zhihua;
Zhao, Fangqing;
Li, Lingyan;
Zheng, Xiaowei;
Dong, Xiuzhu

Publication type:

Article

Novel organization of mitochondrial minicircles and guide RNAs in the zoonotic pathogen Trypanosoma lewisi.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9747, doi. 10.1093/nar/gkaa700

By:

Li, Su-Jin;
Zhang, Xuan;
Lukeš, Julius;
Li, Bi-Qi;
Wang, Ju-Feng;
Qu, Liang-Hu;
Hide, Geoff;
Lai, De-Hua;
Lun, Zhao-Rong

Publication type:

Article

A 5′ UTR GGN repeat controls localisation and translation of a potassium leak channel mRNA through G-quadruplex formation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9822, doi. 10.1093/nar/gkaa699

By:

Maltby, Connor J;
Schofield, James P R;
Houghton, Steven D;
O'Kelly, Ita;
Vargas-Caballero, Mariana;
Deinhardt, Katrin;
Coldwell, Mark J

Publication type:

Article

A role of the CTCF binding site at enhancer Eα in the dynamic chromatin organization of the Tcra–Tcrd locus.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9621, doi. 10.1093/nar/gkaa711

By:

Zhao, Hao;
Li, Zhaoqiang;
Zhu, Yongchang;
Bian, Shasha;
Zhang, Yan;
Qin, Litao;
Naik, Abani Kanta;
He, Jiangtu;
Zhang, Zhenhai;
Krangel, Michael S;
Hao, Bingtao

Publication type:

Article

YdiV regulates Escherichia coli ferric uptake by manipulating the DNA-binding ability of Fur in a SlyD-dependent manner.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9571, doi. 10.1093/nar/gkaa696

By:

Zhang, Fengyu;
Li, Bingqing;
Dong, Hongjie;
Chen, Min;
Yao, Shun;
Li, Jingwen;
Zhang, Honghai;
Liu, Xiangguo;
Wang, Hongwei;
Song, Nannan;
Zhang, Kundi;
Du, Ning;
Xu, Sujuan;
Gu, Lichuan

Publication type:

Article

A CRISPR-associated factor Csa3a regulates DNA damage repair in Crenarchaeon Sulfolobus islandicus.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9681, doi. 10.1093/nar/gkaa694

By:

Liu, Zhenzhen;
Sun, Mengmeng;
Liu, Jilin;
Liu, Tao;
Ye, Qing;
Li, Yingjun;
Peng, Nan

Publication type:

Article

Near-infrared-traceable DNA nano-hydrolase: specific eradication of telomeric G-overhang in vivo.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9986, doi. 10.1093/nar/gkaa693

By:

Sun, Yuhuan;
Zhao, Chuanqi;
Cui, Tingting;
Qin, Hongshuang;
Niu, Jingsheng;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

Structural and mechanistic insights into the CRISPR inhibition of AcrIF7.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9959, doi. 10.1093/nar/gkaa690

By:

Kim, Iktae;
Koo, Jasung;
An, So Young;
Hong, Suji;
Ka, Donghyun;
Kim, Eun-Hee;
Bae, Euiyoung;
Suh, Jeong-Yong

Publication type:

Article

A missense mutation in the CSTF2 gene that impairs the function of the RNA recognition motif and causes defects in 3′ end processing is associated with intellectual disability in humans.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9804, doi. 10.1093/nar/gkaa689

By:

Grozdanov, Petar N;
Masoumzadeh, Elahe;
Kalscheuer, Vera M;
Bienvenu, Thierry;
Billuart, Pierre;
Delrue, Marie-Ange;
Latham, Michael P;
MacDonald, Clinton C

Publication type:

Article

The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9943, doi. 10.1093/nar/gkaa688

By:

González-Corrochano, Rocío;
Ruiz, Federico M;
Taylor, Nicholas M I;
Huecas, Sonia;
Drakulic, Srdja;
Spínola-Amilibia, Mercedes;
Fernández-Tornero, Carlos

Publication type:

Article

Robust partitioning of microRNA targets from downstream regulatory changes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9724, doi. 10.1093/nar/gkaa687

By:

Patel, Ravi K;
West, Jessica D;
Jiang, Ya;
Fogarty, Elizabeth A;
Grimson, Andrew

Publication type:

Article

Genome maintenance functions of a putative Trypanosoma brucei translesion DNA polymerase include telomere association and a role in antigenic variation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9660, doi. 10.1093/nar/gkaa686

By:

Leal, Andrea Zurita;
Schwebs, Marie;
Briggs, Emma;
Weisert, Nadine;
Reis, Helena;
Lemgruber, Leandro;
Luko, Katarina;
Wilkes, Jonathan;
Butter, Falk;
McCulloch, Richard;
Janzen, Christian J

Publication type:

Article

Spacer acquisition by Type III CRISPR–Cas system during bacteriophage infection of Thermus thermophilus.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9787, doi. 10.1093/nar/gkaa685

By:

Artamonova, Daria;
Karneyeva, Karyna;
Medvedeva, Sofia;
Klimuk, Evgeny;
Kolesnik, Matvey;
Yasinskaya, Anna;
Samolygo, Aleksei;
Severinov, Konstantin

Publication type:

Article

RNA-binding and prion domains: the Yin and Yang of phase separation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9491, doi. 10.1093/nar/gkaa681

By:

Gotor, Nieves Lorenzo;
Armaos, Alexandros;
Calloni, Giulia;
Torrent Burgas, Marc;
Vabulas, R Martin;
De Groot, Natalia Sanchez;
Tartaglia, Gian Gaetano

Publication type:

Article

Inferring efficiency of translation initiation and elongation from ribosome profiling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9478, doi. 10.1093/nar/gkaa678

By:

Szavits-Nossan, Juraj;
Ciandrini, Luca

Publication type:

Article

Structural basis for transcription inhibition by E. coli SspA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9931, doi. 10.1093/nar/gkaa672

By:

Wang, Fulin;
Shi, Jing;
He, Dingwei;
Tong, Bei;
Zhang, Chao;
Wen, Aijia;
Zhang, Yu;
Feng, Yu;
Lin, Wei

Publication type:

Article

Enhancer RNAs predict enhancer–gene regulatory links and are critical for enhancer function in neuronal systems.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9550, doi. 10.1093/nar/gkaa671

By:

Carullo, Nancy V N;
Phillips III, Robert A;
Simon, Rhiana C;
Soto, Salomon A Roman;
Hinds, Jenna E;
Salisbury, Aaron J;
Revanna, Jasmin S;
Bunner, Kendra D;
Ianov, Lara;
Sultan, Faraz A;
Savell, Katherine E;
Gersbach, Charles A;
Day, Jeremy J

Publication type:

Article

Structural, biochemical and functional analyses of tRNA-monooxygenase enzyme MiaE from Pseudomonas putida provide insights into tRNA/MiaE interaction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9918, doi. 10.1093/nar/gkaa667

By:

Carpentier, Philippe;
Leprêtre, Chloé;
Basset, Christian;
Douki, Thierry;
Torelli, Stéphane;
Duarte, Victor;
Hamdane, Djemel;
Fontecave, Marc;
Atta, Mohamed

Publication type:

Article

Atypical structures of GAA/TTC trinucleotide repeats underlying Friedreich's ataxia: DNA triplexes and RNA/DNA hybrids.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9899, doi. 10.1093/nar/gkaa665

By:

Zhang, Jiahui;
Fakharzadeh, Ashkan;
Pan, Feng;
Roland, Christopher;
Sagui, Celeste

Publication type:

Article

Semisynthesis of site-specifically succinylated histone reveals that succinylation regulates nucleosome unwrapping rate and DNA accessibility.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9538, doi. 10.1093/nar/gkaa663

By:

Jing, Yihang;
Ding, Dongbo;
Tian, Gaofei;
Kwan, Ka Chun Jonathan;
Liu, Zheng;
Ishibashi, Toyotaka;
Li, Xiang David

Publication type:

Article

Identification and characterization of hippuristanol-resistant mutants reveals eIF4A1 dependencies within mRNA 5′ leader regions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9521, doi. 10.1093/nar/gkaa662

By:

Steinberger, Jutta;
Shen, Leo;
J. Kiniry, Stephen;
Naineni, Sai Kiran;
Cencic, Regina;
Amiri, Mehdi;
Aboushawareb, Sarah A E;
Chu, Jennifer;
Maïga, Rayelle Itoua;
Yachnin, Brahm J;
Robert, Francis;
Sonenberg, Nahum;
Baranov, Pavel V;
Pelletier, Jerry

Publication type:

Article

Analyzing editosome function in high-throughput.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. e99, doi. 10.1093/nar/gkaa658

By:

Del Campo, Cristian;
Leeder, Wolf-Matthias;
Reißig, Paul;
Göringer, H Ulrich

Publication type:

Article

On the expanding roles of tRNA fragments in modulating cell behavior.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9433, doi. 10.1093/nar/gkaa657

By:

Magee, Rogan;
Rigoutsos, Isidore

Publication type:

Article

Conformational flexibility and oligomerization of BRCA2 regions induced by RAD51 interaction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9649, doi. 10.1093/nar/gkaa648

By:

Sidhu, Arshdeep;
Grosbart, Małgorzata;
Sánchez, Humberto;
Verhagen, Bram;
van der Zon, Nick L L;
Ristić, Dejan;
van Rossum-Fikkert, Sarah E;
Wyman, Claire

Publication type:

Article

PINCER: improved CRISPR/Cas9 screening by efficient cleavage at conserved residues.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9462, doi. 10.1093/nar/gkaa645

By:

Veeneman, Brendan;
Gao, Ying;
Grant, Joy;
Fruhling, David;
Ahn, James;
Bosbach, Benedikt;
Bienkowska, Jadwiga;
Follettie, Maximillian;
Arndt, Kim;
Myers, Jeremy;
Zhong, Wenyan

Publication type:

Article

Single molecule mass photometry of nucleic acids.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. e97, doi. 10.1093/nar/gkaa632

By:

Li, Yiwen;
Struwe, Weston B;
Kukura, Philipp

Publication type:

Article

Comprehensive nucleosome interactome screen establishes fundamental principles of nucleosome binding.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9415, doi. 10.1093/nar/gkaa544

By:

Skrajna, Aleksandra;
Goldfarb, Dennis;
Kedziora, Katarzyna M;
Cousins, Emily M;
Grant, Gavin D;
Spangler, Cathy J;
Barbour, Emily H;
Yan, Xiaokang;
Hathaway, Nathaniel A;
Brown, Nicholas G;
Cook, Jeanette G;
Major, Michael B;
McGinty, Robert K

Publication type:

Article

Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9886, doi. 10.1093/nar/gkaa439

By:

Zhang, Yashu;
El Omari, Kamel;
Duman, Ramona;
Liu, Sisi;
Haider, Shozeb;
Wagner, Armin;
Parkinson, Gary N;
Wei, Dengguo

Publication type:

Article

YBEY is an essential biogenesis factor for mitochondrial ribosomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9762, doi. 10.1093/nar/gkaa148

By:

Summer, Sabrina;
Smirnova, Anna;
Gabriele, Alessandro;
Toth, Ursula;
Fasemore, Akinyemi Mandela;
Förstner, Konrad U;
Kuhn, Lauriane;
Chicher, Johana;
Hammann, Philippe;
Mitulović, Goran;
Entelis, Nina;
Tarassov, Ivan;
Rossmanith, Walter;
Smirnov, Alexandre

Publication type:

Article