Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 16

Results: 48

Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9414, doi. 10.1093/nar/gkaa701

By:

Stewart, Jaimie Marie;
Subramanian, Hari K K;
Franco, Elisa

Publication type:

Article

Single-molecule fluorescence studies on cotranscriptional G-quadruplex formation coupled with R-loop formation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9195, doi. 10.1093/nar/gkaa695

By:

Lim, Gunhyoung;
Hohng, Sungchul

Publication type:

Article

Uncoupling gene expression noise along the central dogma using genome engineered human cell lines.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9406, doi. 10.1093/nar/gkaa668

By:

Quarton, Tyler;
Kang, Taek;
Papakis, Vasileios;
Nguyen, Khai;
Nowak, Chance;
Li, Yi;
Bleris, Leonidas

Publication type:

Article

Extracellular vesicles engineered with valency-controlled DNA nanostructures deliver CRISPR/Cas9 system for gene therapy.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8870, doi. 10.1093/nar/gkaa683

By:

Zhuang, Jialang;
Tan, Jizhou;
Wu, Chenglin;
Zhang, Jie;
Liu, Ting;
Fan, Chunhai;
Li, Jiaping;
Zhang, Yuanqing

Publication type:

Article

hnRNPK recognition of the B motif of Xist and other biological RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9320, doi. 10.1093/nar/gkaa677

By:

Nakamoto, Meagan Y;
Lammer, Nickolaus C;
Batey, Robert T;
Wuttke, Deborah S

Publication type:

Article

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9301, doi. 10.1093/nar/gkaa676

By:

Hör, Jens;
Di Giorgio, Silvia;
Gerovac, Milan;
Venturini, Elisa;
Förstner, Konrad U;
Vogel, Jörg

Publication type:

Article

Activation of viral transcription by stepwise largescale folding of an RNA virus genome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9285, doi. 10.1093/nar/gkaa675

By:

Chkuaseli, Tamari;
White, K Andrew

Publication type:

Article

METTL4 catalyzes m<sup>6</sup>Am methylation in U2 snRNA to regulate pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9250, doi. 10.1093/nar/gkaa684

By:

Goh, Yeek Teck;
Koh, Casslynn W Q;
Sim, Donald Yuhui;
Roca, Xavier;
Goh, W S Sho

Publication type:

Article

Tumor suppressor p53: from engaging DNA to target gene regulation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8848, doi. 10.1093/nar/gkaa666

By:

Sammons, Morgan A;
Nguyen, Thuy-Ai T;
McDade, Simon S;
Fischer, Martin

Publication type:

Article

Location specific annealing of miR-122 and other small RNAs defines an Hepatitis C Virus 5′ UTR regulatory element with distinct impacts on virus translation and genome stability.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9235, doi. 10.1093/nar/gkaa664

By:

Kunden, Rasika D;
Ghezelbash, Sarah;
Khan, Juveriya Q;
Wilson, Joyce A

Publication type:

Article

The deacetylase SIRT6 promotes the repair of UV-induced DNA damage by targeting DDB2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9181, doi. 10.1093/nar/gkaa661

By:

Geng, Anke;
Tang, Huanyin;
Huang, Jin;
Qian, Zhen;
Qin, Nan;
Yao, Yunxia;
Xu, Zhu;
Chen, Hao;
Lan, Li;
Xie, Hongjuan;
Zhang, Jian;
Jiang, Ying;
Mao, Zhiyong

Publication type:

Article

FANCJ compensates for RAP80 deficiency and suppresses genomic instability induced by interstrand cross-links.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9161, doi. 10.1093/nar/gkaa660

By:

Awate, Sanket;
Sommers, Joshua A;
Datta, Arindam;
Nayak, Sumeet;
Bellani, Marina A;
Yang, Olivia;
Dunn, Christopher A;
Nicolae, Claudia M;
Moldovan, George-Lucian;
Seidman, Michael M;
Cantor, Sharon B;
Brosh, Robert M

Publication type:

Article

The nucleic acid chaperone activity of the HIV-1 Gag polyprotein is boosted by its cellular partner RPL7: a kinetic study.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9218, doi. 10.1093/nar/gkaa659

By:

Karnib, Hassan;
Nadeem, Muhammad F;
Humbert, Nicolas;
Sharma, Kamal K;
Grytsyk, Natalia;
Tisné, Carine;
Boutant, Emmanuel;
Lequeu, Thiebault;
Réal, Eleonore;
Boudier, Christian;
de Rocquigny, Hugues;
Mély, Yves

Publication type:

Article

The Sac10b homolog from Sulfolobus islandicus is an RNA chaperone.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9273, doi. 10.1093/nar/gkaa656

By:

Zhang, Ningning;
Guo, Li;
Huang, Li

Publication type:

Article

A quantitative binding model for the Apl protein, the dual purpose recombination-directionality factor and lysis-lysogeny regulator of bacteriophage 186.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8914, doi. 10.1093/nar/gkaa655

By:

Cutts, Erin E;
Barry Egan, J;
Dodd, Ian B;
Shearwin, Keith E

Publication type:

Article

Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8901, doi. 10.1093/nar/gkaa654

By:

Hopfinger, Melissa C;
Kirkpatrick, Charles C;
Znosko, Brent M

Publication type:

Article

LOTUS domain is a novel class of G-rich and G-quadruplex RNA binding domain.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9262, doi. 10.1093/nar/gkaa652

By:

Ding, Deqiang;
Wei, Chao;
Dong, Kunzhe;
Liu, Jiali;
Stanton, Alexander;
Xu, Chao;
Min, Jinrong;
Hu, Jian;
Chen, Chen

Publication type:

Article

Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9387, doi. 10.1093/nar/gkaa647

By:

Malik, Deepshikha;
Kobyłecki, Kamil;
Krawczyk, Paweł;
Poznański, Jarosław;
Jakielaszek, Aleksandra;
Napiórkowska, Agnieszka;
Dziembowski, Andrzej;
Tomecki, Rafał;
Nowotny, Marcin

Publication type:

Article

GapR binds DNA through dynamic opening of its tetrameric interface.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9372, doi. 10.1093/nar/gkaa644

By:

Huang, Qian;
Duan, Bo;
Dong, Xianzhi;
Fan, Shilong;
Xia, Bin

Publication type:

Article

Canonical non-homologous end-joining promotes genome mutagenesis and translocations induced by transcription-associated DNA topoisomerase 2 activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9147, doi. 10.1093/nar/gkaa640

By:

Olmedo-Pelayo, Joaquín;
Rubio-Contreras, Diana;
Gómez-Herreros, Fernando

Publication type:

Article

Microcephaly family protein MCPH1 stabilizes RAD51 filaments.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9135, doi. 10.1093/nar/gkaa636

By:

Chang, Hao-Yen;
Lee, Chia-Yi;
Lu, Chih-Hao;
Lee, Wei;
Yang, Han-Lin;
Yeh, Hsin-Yi;
Li, Hung-Wen;
Chi, Peter

Publication type:

Article

Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8828, doi. 10.1093/nar/gkaa635

By:

Makarova, Kira S;
Timinskas, Albertas;
Wolf, Yuri I;
Gussow, Ayal B;
Siksnys, Virginijus;
Venclovas, Česlovas;
Koonin, Eugene V

Publication type:

Article

Type III-A CRISPR-associated protein Csm6 degrades cyclic hexa-adenylate activator using both CARF and HEPN domains.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9204, doi. 10.1093/nar/gkaa634

By:

Smalakyte, Dalia;
Kazlauskiene, Migle;
F. Havelund, Jesper;
Rukšėnaitė, Audronė;
Rimaite, Auguste;
Tamulaitiene, Giedre;
Færgeman, Nils J;
Tamulaitis, Gintautas;
Siksnys, Virginijus

Publication type:

Article

Mismatch repair and DNA polymerase δ proofreading prevent catastrophic accumulation of leading strand errors in cells expressing a cancer-associated DNA polymerase ϵ variant.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9124, doi. 10.1093/nar/gkaa633

By:

Bulock, Chelsea R;
Xing, Xuanxuan;
Shcherbakova, Polina V

Publication type:

Article

NRF2 preserves genomic integrity by facilitating ATR activation and G2 cell cycle arrest.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9109, doi. 10.1093/nar/gkaa631

By:

Sun, Xiaohui;
Wang, Yan;
Ji, Kaihua;
Liu, Yang;
Kong, Yangyang;
Nie, Shasha;
Li, Na;
Hao, Jianxiu;
Xie, Yi;
Xu, Chang;
Du, Liqing;
Liu, Qiang

Publication type:

Article

Comprehensive multi-omics analysis uncovers a group of TGF-β-regulated genes among lncRNA EPR direct transcriptional targets.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9053, doi. 10.1093/nar/gkaa628

By:

Zapparoli, Ettore;
Briata, Paola;
Rossi, Martina;
Brondolo, Lorenzo;
Bucci, Gabriele;
Gherzi, Roberto

Publication type:

Article

The chromatin-binding protein PHF6 functions as an E3 ubiquitin ligase of H2BK120 via H2BK12Ac recognition for activation of trophectodermal genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9037, doi. 10.1093/nar/gkaa626

By:

Oh, Sungryong;
Boo, Kyungjin;
Kim, Jaebeom;
Baek, Seon Ah;
Jeon, Yoon;
You, Junghyun;
Lee, Ho;
Choi, Hee-Jung;
Park, Daechan;
Lee, Ji Min;
Baek, Sung Hee

Publication type:

Article

Interplay of RFX transcription factors 1, 2 and 3 in motile ciliogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9019, doi. 10.1093/nar/gkaa625

By:

Lemeille, Sylvain;
Paschaki, Marie;
Baas, Dominique;
Morlé, Laurette;
Duteyrat, Jean-Luc;
Ait-Lounis, Aouatef;
Barras, Emmanuèle;
Soulavie, Fabien;
Jerber, Julie;
Thomas, Joëlle;
Zhang, Yong;
Holtzman, Michael J;
Kistler, W Stephen;
Reith, Walter;
Durand, Bénédicte

Publication type:

Article

Alternative linker histone permits fast paced nuclear divisions in early Drosophila embryo.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9007, doi. 10.1093/nar/gkaa624

By:

Henn, László;
Szabó, Anikó;
Imre, László;
Román, Ádám;
Ábrahám, Andrea;
Vedelek, Balázs;
Nánási, Péter;
Boros, Imre M

Publication type:

Article

Quantitative, super-resolution localization of small RNAs with sRNA-PAINT.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e96, doi. 10.1093/nar/gkaa623

By:

Huang, Kun;
Demirci, Feray;
Batish, Mona;
Treible, Wayne;
Meyers, Blake C;
Caplan, Jeffrey L

Publication type:

Article

DRAM for distilling microbial metabolism to automate the curation of microbiome function.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8883, doi. 10.1093/nar/gkaa621

By:

Shaffer, Michael;
Borton, Mikayla A;
McGivern, Bridget B;
Zayed, Ahmed A;
La Rosa, Sabina Leanti;
Solden, Lindsey M;
Liu, Pengfei;
Narrowe, Adrienne B;
Rodríguez-Ramos, Josué;
Bolduc, Benjamin;
Gazitúa, M Consuelo;
Daly, Rebecca A;
Smith, Garrett J;
Vik, Dean R;
Pope, Phil B;
Sullivan, Matthew B;
Roux, Simon;
Wrighton, Kelly C

Publication type:

Article

A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e91, doi. 10.1093/nar/gkaa550

By:

Turakhia, Yatish;
Chen, Heidi I;
Marcovitz, Amir;
Bejerano, Gill

Publication type:

Article

IncC conjugative plasmids and SXT/R391 elements repair double-strand breaks caused by CRISPR–Cas during conjugation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8815, doi. 10.1093/nar/gkaa518

By:

Roy, David;
Huguet, Kevin T;
Grenier, Frédéric;
Burrus, Vincent

Publication type:

Article

Structure of two G-quadruplexes in equilibrium in the KRAS promoter.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9336, doi. 10.1093/nar/gkaa387

By:

Marquevielle, Julien;
Robert, Coralie;
Lagrabette, Olivier;
Wahid, Mona;
Bourdoncle, Anne;
Xodo, Luigi E;
Mergny, Jean-Louis;
Salgado, Gilmar F

Publication type:

Article

Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9361, doi. 10.1093/nar/gkaa619

By:

Zhang, Jingfeng;
Fan, Jing-Song;
Li, Shuangli;
Yang, Yunhuang;
Sun, Peng;
Zhu, Qinjun;
Wang, Jiannan;
Jiang, Bin;
Yang, Daiwen;
Liu, Maili

Publication type:

Article

Activation of DNA-PK by hairpinned DNA ends reveals a stepwise mechanism of kinase activation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9098, doi. 10.1093/nar/gkaa614

By:

Meek, Katheryn

Publication type:

Article

Nucleosomes effectively shield DNA from radiation damage in living cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8993, doi. 10.1093/nar/gkaa613

By:

Brambilla, Francesca;
Garcia-Manteiga, Jose Manuel;
Monteleone, Emanuele;
Hoelzen, Lena;
Zocchi, Angelica;
Agresti, Alessandra;
Bianchi, Marco E

Publication type:

Article

Chromatin recruitment of OGG1 requires cohesin and mediator and is essential for efficient 8-oxoG removal.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9082, doi. 10.1093/nar/gkaa611

By:

Lebraud, Emilie;
Pinna, Guillaume;
Siberchicot, Capucine;
Depagne, Jordane;
Busso, Didier;
Fantini, Damiano;
Irbah, Lamya;
Robeska, Elena;
Kratassiouk, Gueorgui;
Ravanat, Jean-Luc;
Epe, Bernd;
Radicella, J Pablo;
Campalans, Anna

Publication type:

Article

Gcn2 eIF2α kinase mediates combinatorial translational regulation through nucleotide motifs and uORFs in target mRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8977, doi. 10.1093/nar/gkaa608

By:

Chikashige, Yuji;
Kato, Hiroaki;
Thornton, Mackenzie;
Pepper, Whitney;
Hilgers, Madelyn;
Cecil, Ariana;
Asano, Izumi;
Yamada, Haana;
Mori, Chie;
Brunkow, Cheyenne;
Moravek, Carter;
Urano, Takeshi;
Singh, Chingakham Ranjit;
Asano, Katsura

Publication type:

Article

Egr2-guided histone H2B monoubiquitination is required for peripheral nervous system myelination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8959, doi. 10.1093/nar/gkaa606

By:

Wüst, Hannah M;
Wegener, Amélie;
Fröb, Franziska;
Hartwig, Anna C;
Wegwitz, Florian;
Kari, Vijayalakshmi;
Schimmel, Margit;
Tamm, Ernst R;
Johnsen, Steven A;
Wegner, Michael;
Sock, Elisabeth

Publication type:

Article

CRISPR/Cas9 treatment causes extended TP53-dependent cell cycle arrest in human cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9067, doi. 10.1093/nar/gkaa603

By:

Geisinger, Jonathan M;
Stearns, Tim

Publication type:

Article

DropSynth 2.0: high-fidelity multiplexed gene synthesis in emulsions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e95, doi. 10.1093/nar/gkaa600

By:

Sidore, Angus M;
Plesa, Calin;
Samson, Joyce A;
Lubock, Nathan B;
Kosuri, Sriram

Publication type:

Article

Targeted DNA oxidation by LSD1–SMAD2/3 primes TGF-β1/ EMT genes for activation or repression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8943, doi. 10.1093/nar/gkaa599

By:

Pezone, Antonio;
Taddei, Maria Letizia;
Tramontano, Alfonso;
Dolcini, Jacopo;
Boffo, Francesca Ludovica;
De Rosa, Mariarosaria;
Parri, Matteo;
Stinziani, Stefano;
Comito, Giuseppina;
Porcellini, Antonio;
Raugei, Giovanni;
Gackowski, Daniel;
Zarakowska, Ewelina;
Olinski, Ryszard;
Gabrielli, Armando;
Chiarugi, Paola;
Avvedimento, Enrico Vittorio

Publication type:

Article

An NMR-based approach reveals the core structure of the functional domain of SINEUP lncRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 9346, doi. 10.1093/nar/gkaa598

By:

Ohyama, Takako;
Takahashi, Hazuki;
Sharma, Harshita;
Yamazaki, Toshio;
Gustincich, Stefano;
Ishii, Yoshitaka;
Carninci, Piero

Publication type:

Article

Post-transcriptional regulation of MRTF-A by miRNAs during myogenic differentiation of myoblasts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. 8927, doi. 10.1093/nar/gkaa596

By:

Holstein, Ingo;
Singh, Anurag Kumar;
Pohl, Falk;
Misiak, Danny;
Braun, Juliane;
Leitner, Laura;
Hüttelmaier, Stefan;
Posern, Guido

Publication type:

Article

Variance-adjusted Mahalanobis (VAM): a fast and accurate method for cell-specific gene set scoring.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e94, doi. 10.1093/nar/gkaa582

By:

Frost, Hildreth Robert

Publication type:

Article

Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e93, doi. 10.1093/nar/gkaa568

By:

Tovo, Anna;
Menzel, Peter;
Krogh, Anders;
Cosentino Lagomarsino, Marco;
Suweis, Samir

Publication type:

Article

IMPLICON: an ultra-deep sequencing method to uncover DNA methylation at imprinted regions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 16, p. e92, doi. 10.1093/nar/gkaa567

By:

Klobučar, Tajda;
Kreibich, Elisa;
Krueger, Felix;
Arez, Maria;
Pólvora-Brandão, Duarte;
von Meyenn, Ferdinand;
da Rocha, Simão Teixeira;
Eckersley-Maslin, Melanie

Publication type:

Article