Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 15

Results: 37

The oncofetal RNA-binding protein IGF2BP1 is a druggable, post-transcriptional super-enhancer of E2F-driven gene expression in cancer.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8576, doi. 10.1093/nar/gkaa653

By:

Müller, Simon;
Bley, Nadine;
Busch, Bianca;
Glaß, Markus;
Lederer, Marcell;
Misiak, Claudia;
Fuchs, Tommy;
Wedler, Alice;
Haase, Jacob;
Bertoldo, Jean Borges;
Michl, Patrick;
Hüttelmaier, Stefan

Publication type:

Article

A comprehensive rat transcriptome built from large scale RNA-seq-based annotation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8320, doi. 10.1093/nar/gkaa638

By:

Xiangjun Ji;
Peng Li;
Fuscoe, James C.;
Geng Chen;
Wenzhong Xiao;
Leming Shi;
Baitang Ning;
Zhichao Liu;
Huixiao Hong;
Jun Wu;
Jinghua Liu;
Lei Guo;
Kreil, David P.;
Łabaj, Paweł P.;
Liping Zhong;
Wenjun Bao;
Yong Huang;
Jian He;
Yongxiang Zhao;
Weida Tong

Publication type:

Article

RNA-tethering assay and eIF4G:eIF4A obligate dimer design uncovers multiple eIF4F functional complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8562, doi. 10.1093/nar/gkaa646

By:

Robert, Francis;
Cencic, Regina;
Cai, Renying;
Schmeing, T. Martin;
Pelletier, Jerry

Publication type:

Article

Plant mitochondria use two pathways for the biogenesis of tRNA His.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8810, doi. 10.1093/nar/gkaa650

By:

Placido, Antonio;
Sieber, François;
Gobert, Anthony;
Gallerani, Raffaele;
Giegé, Philippe;
Maréchal-Drouard, Laurence

Publication type:

Article

Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8724, doi. 10.1093/nar/gkaa643

By:

Yi Tian;
Zhouhao Zeng;
Xiang Li;
Yiyin Wang;
Runsen Chen;
Mattijssen, Sandy;
Gaidamakov, Sergei;
Yuzhang Wu;
Maraia, Richard J.;
Weiqun Peng;
Jun Zhu

Publication type:

Article

Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8704, doi. 10.1093/nar/gkaa641

By:

T Smith Jr., Joseph;
Doleželová, Eva;
Tylec, Brianna;
Bard, Jonathan E;
Chen, Runpu;
Sun, Yijun;
Zíková, Alena;
Read, Laurie K

Publication type:

Article

Detection of base analogs incorporated during DNA replication by nanopore sequencing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 1, doi. 10.1093/nar/gkaa517

By:

Georgieva, Daniela;
Qian Liu;
Kai Wang;
Egli, Dieter

Publication type:

Article

MtDNA sequence features associated with 'selfish genomes' predict tissue-specific segregation and reversion.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8290, doi. 10.1093/nar/gkaa622

By:

Røyrvik, Ellen C;
Johnston, Iain G

Publication type:

Article

Impact of 5-formylcytosine on the melting kinetics of DNA by 1H NMR chemical exchange.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8796, doi. 10.1093/nar/gkaa589

By:

Dubini, Romeo C. A.;
Schön, Alexander;
Müller, Markus;
Carell, Thomas;
Rovó, Petra

Publication type:

Article

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8529, doi. 10.1093/nar/gkaa642

By:

Dantas Machado, Ana Carolina;
Cooper, Brendon H;
Lei, Xiao;
Di Felice, Rosa;
Chen, Lin;
Rohs, Remo

Publication type:

Article

Steady-state levels of imported tRNAs in Chlamydomonas mitochondria are correlated with both cytosolic and mitochondrial codon usages.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8808, doi. 10.1093/nar/gkaa649

By:

Vinogradova, Elizaveta;
Salinas, Thalia;
Cognat, Valérie;
Remacle, Claire;
Maréchal-Drouard, Laurence

Publication type:

Article

Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8243, doi. 10.1093/nar/gkaa630

By:

Shuman, Stewart

Publication type:

Article

Frequency and hydrogen bonding of nucleobase homopairs in small molecule crystals.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8302, doi. 10.1093/nar/gkaa629

By:

Cabaj, Małgorzata Katarzyna;
Dominiak, Paulina Maria

Publication type:

Article

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8812, doi. 10.1093/nar/gkaa651

By:

Cognat, Valérie;
Morelle, Geoffrey;
Megel, Cyrille;
Lalande, Stéphanie;
Molinier, Jean;
Vincent, Timothée;
Small, Ian;
Duchêne, Anne-Marie;
Maréchal-Drouard, Laurence

Publication type:

Article

Insights into the global effect on Staphylococcus aureus growth arrest by induction of the endoribonuclease MazF toxin.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8545, doi. 10.1093/nar/gkaa617

By:

Sierra, Roberto;
Prados, Julien;
Panasenko, Olesya O;
Andrey, Diego O;
Fleuchot, Betty;
Redder, Peter;
Kelley, William L;
Viollier, Patrick H;
Renzoni, Adriana

Publication type:

Article

Upregulation of BCL-2 by acridone derivative through gene promoter i-motif for alleviating liver damage of NAFLD/NASH.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8255, doi. 10.1093/nar/gkaa615

By:

Li, Xiaoya;
Wang, Jing;
Gong, Xue;
Zhang, Meiling;
Kang, Shuangshuang;
Shu, Bing;
Wei, Zuzhuang;
Huang, Zhi-Shu;
Li, Ding

Publication type:

Article

H/ACA snoRNA levels are regulated during stem cell differentiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8686, doi. 10.1093/nar/gkaa612

By:

McCann, Kathleen L;
Kavari, Sanam L;
Burkholder, Adam B;
Phillips, Bart T;
Hall, Traci M Tanaka

Publication type:

Article

Base-intercalated and base-wedged stacking elements in 3D-structure of RNA and RNA–protein complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8675, doi. 10.1093/nar/gkaa610

By:

Baulin, Eugene;
Metelev, Valeriy;
Bogdanov, Alexey

Publication type:

Article

IPANEMAP: integrative probing analysis of nucleic acids empowered by multiple accessibility profiles.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8276, doi. 10.1093/nar/gkaa607

By:

Saaidi, Afaf;
Allouche, Delphine;
Regnier, Mireille;
Sargueil, Bruno;
Ponty, Yann

Publication type:

Article

Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8490, doi. 10.1093/nar/gkaa597

By:

Henrikus, Sarah S;
Henry, Camille;
McGrath, Amy E;
Jergic, Slobodan;
McDonald, John P;
Hellmich, Yvonne;
Bruckbauer, Steven T;
Ritger, Matthew L;
Cherry, Megan E;
Wood, Elizabeth A;
Pham, Phuong T;
Goodman, Myron F;
Woodgate, Roger;
Cox, Michael M;
van Oijen, Antoine M;
Ghodke, Harshad;
Robinson, Andrew

Publication type:

Article

The RNA exosome shapes the expression of key protein-coding genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8509, doi. 10.1093/nar/gkaa594

By:

Wu, Mengjun;
Karadoulama, Evdoxia;
Lloret-Llinares, Marta;
Rouviere, Jerome Olivier;
Vaagensø, Christian Skov;
Moravec, Martin;
Li, Bingnan;
Wang, Jingwen;
Wu, Guifen;
Gockert, Maria;
Pelechano, Vicent;
Jensen, Torben Heick;
Sandelin, Albin

Publication type:

Article

Adenita: interactive 3D modelling and visualization of DNA nanostructures.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8269, doi. 10.1093/nar/gkaa593

By:

de Llano, Elisa;
Miao, Haichao;
Ahmadi, Yasaman;
Wilson, Amanda J;
Beeby, Morgan;
Viola, Ivan;
Barisic, Ivan

Publication type:

Article

Dual roles of yeast Rad51 N-terminal domain in repairing DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8474, doi. 10.1093/nar/gkaa587

By:

Woo, Tai-Ting;
Chuang, Chi-Ning;
Higashide, Mika;
Shinohara, Akira;
Wang, Ting-Fang

Publication type:

Article

Cutting in-line with iron: ribosomal function and non-oxidative RNA cleavage.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8663, doi. 10.1093/nar/gkaa586

By:

Guth-Metzler, Rebecca;
Bray, Marcus S;
Frenkel-Pinter, Moran;
Suttapitugsakul, Suttipong;
Montllor-Albalate, Claudia;
Bowman, Jessica C;
Wu, Ronghu;
Reddi, Amit R;
Okafor, C Denise;
Glass, Jennifer B;
Williams, Loren Dean

Publication type:

Article

Dnmt1 binds and represses genomic retroelements via DNA methylation in mouse early embryos.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8431, doi. 10.1093/nar/gkaa584

By:

Min, Byungkuk;
Park, Jung Sun;
Jeong, Young Sun;
Jeon, Kyuheum;
Kang, Yong-Kook

Publication type:

Article

Bypass of DNA interstrand crosslinks by a Rev1–DNA polymerase ζ complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8461, doi. 10.1093/nar/gkaa580

By:

Bezalel-Buch, Rachel;
Cheun, Young K;
Roy, Upasana;
Schärer, Orlando D;
Burgers, Peter M

Publication type:

Article

Resolving Toxic DNA repair intermediates in every E. coli replication cycle: critical roles for RecG, Uup and RadD.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8445, doi. 10.1093/nar/gkaa579

By:

Romero, Zachary J;
Chen, Stefanie H;
Armstrong, Thomas;
Wood, Elizabeth A;
van Oijen, Antoine;
Robinson, Andrew;
Cox, Michael M

Publication type:

Article

DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8755, doi. 10.1093/nar/gkaa574

By:

Yu, Hao;
Li, Jiayi;
Liu, Guang;
Zhao, Gong;
Wang, Yuli;
Hu, Wenyue;
Deng, Zixin;
Wu, Geng;
Gan, Jianhua;
Zhao, Yi-Lei;
He, Xinyi

Publication type:

Article

Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8408, doi. 10.1093/nar/gkaa571

By:

Qiu, Hongfang;
Biernat, Emily;
Govind, Chhabi K;
Rawal, Yashpal;
Chereji, Răzvan V;
Clark, David J;
Hinnebusch, Alan G

Publication type:

Article

Anti-inflammatory functions of the glucocorticoid receptor require DNA binding.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8393, doi. 10.1093/nar/gkaa565

By:

Escoter-Torres, Laura;
Greulich, Franziska;
Quagliarini, Fabiana;
Wierer, Michael;
Uhlenhaut, Nina Henriette

Publication type:

Article

Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8374, doi. 10.1093/nar/gkaa563

By:

Wragg, Joseph W;
Roos, Leonie;
Vucenovic, Dunja;
Cvetesic, Nevena;
Lenhard, Boris;
Müller, Ferenc

Publication type:

Article

Rph1 coordinates transcription of ribosomal protein genes and ribosomal RNAs to control cell growth under nutrient stress conditions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8360, doi. 10.1093/nar/gkaa558

By:

Shu, Wen-Jie;
Chen, Runfa;
Yin, Zhao-Hong;
Li, Feng;
Zhang, Heng;
Du, Hai-Ning

Publication type:

Article

Transcription of intragenic CpG islands influences spatiotemporal host gene pre-mRNA processing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8349, doi. 10.1093/nar/gkaa556

By:

Amante, Samuele M;
Montibus, Bertille;
Cowley, Michael;
Barkas, Nikolaos;
Setiadi, Jessica;
Saadeh, Heba;
Giemza, Joanna;
Contreras-Castillo, Stephania;
Fleischanderl, Karin;
Schulz, Reiner;
Oakey, Rebecca J

Publication type:

Article

High-throughput methods for measuring DNA thermodynamics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. e89, doi. 10.1093/nar/gkaa521

By:

Bae, Jin H;
Fang, John Z;
Zhang, David Yu

Publication type:

Article

A sensitive assay for dNTPs based on long synthetic oligonucleotides, EvaGreen dye and inhibitor-resistant high-fidelity DNA polymerase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. e87, doi. 10.1093/nar/gkaa516

By:

Purhonen, Janne;
Banerjee, Rishi;
McDonald, Allison E;
Fellman, Vineta;
Kallijärvi, Jukka

Publication type:

Article

5′-fluoro(di)phosphate-labeled oligonucleotides are versatile molecular probes for studying nucleic acid secondary structure and interactions by 19F NMR.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8209, doi. 10.1093/nar/gkaa470

By:

Baranowski, Marek R;
Warminski, Marcin;
Jemielity, Jacek;
Kowalska, Joanna

Publication type:

Article

Structural insight into DNA joining: from conserved mechanisms to diverse scaffolds.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 15, p. 8225, doi. 10.1093/nar/gkaa307

By:

Williamson, Adele;
Leiros, Hanna-Kirsti S

Publication type:

Article

Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 15

The oncofetal RNA-binding protein IGF2BP1 is a druggable, post-transcriptional super-enhancer of E2F-driven gene expression in cancer.

A comprehensive rat transcriptome built from large scale RNA-seq-based annotation.

RNA-tethering assay and eIF4G:eIF4A obligate dimer design uncovers multiple eIF4F functional complexes.

Plant mitochondria use two pathways for the biogenesis of tRNA <sup>His</sup>.

Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation.

Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.

Detection of base analogs incorporated during DNA replication by nanopore sequencing.

MtDNA sequence features associated with 'selfish genomes' predict tissue-specific segregation and reversion.

Impact of 5-formylcytosine on the melting kinetics of DNA by <sup>1</sup>H NMR chemical exchange.

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout.

Steady-state levels of imported tRNAs in Chlamydomonas mitochondria are correlated with both cytosolic and mitochondrial codon usages.

Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis.

Frequency and hydrogen bonding of nucleobase homopairs in small molecule crystals.

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic.

Insights into the global effect on Staphylococcus aureus growth arrest by induction of the endoribonuclease MazF toxin.

Upregulation of BCL-2 by acridone derivative through gene promoter i-motif for alleviating liver damage of NAFLD/NASH.

H/ACA snoRNA levels are regulated during stem cell differentiation.

Base-intercalated and base-wedged stacking elements in 3D-structure of RNA and RNA–protein complexes.

IPANEMAP: integrative probing analysis of nucleic acids empowered by multiple accessibility profiles.

Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair.

The RNA exosome shapes the expression of key protein-coding genes.

Adenita: interactive 3D modelling and visualization of DNA nanostructures.

Dual roles of yeast Rad51 N-terminal domain in repairing DNA double-strand breaks.

Cutting in-line with iron: ribosomal function and non-oxidative RNA cleavage.

Dnmt1 binds and represses genomic retroelements via DNA methylation in mouse early embryos.

Bypass of DNA interstrand crosslinks by a Rev1–DNA polymerase ζ complex.

Resolving Toxic DNA repair intermediates in every E. coli replication cycle: critical roles for RecG, Uup and RadD.

DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses.

Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.

Anti-inflammatory functions of the glucocorticoid receptor require DNA binding.

Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation.

Rph1 coordinates transcription of ribosomal protein genes and ribosomal RNAs to control cell growth under nutrient stress conditions.

Transcription of intragenic CpG islands influences spatiotemporal host gene pre-mRNA processing.

High-throughput methods for measuring DNA thermodynamics.

A sensitive assay for dNTPs based on long synthetic oligonucleotides, EvaGreen dye and inhibitor-resistant high-fidelity DNA polymerase.

5′-fluoro(di)phosphate-labeled oligonucleotides are versatile molecular probes for studying nucleic acid secondary structure and interactions by <sup>19</sup>F NMR.

Structural insight into DNA joining: from conserved mechanisms to diverse scaffolds.