Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 13

Results: 52

PlaMoM: a comprehensive database compiles plant mobile macromolecules.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7607, doi. 10.1093/nar/gkaa538

By:

Guan, Daogang;
Yan, Bin;
Thieme, Christoph;
Hua, Jingmin;
Zhu, Hailong;
Boheler, Kenneth R;
Zhao, Zhongying;
Kragler, Friedrich;
Xia, Yiji;
Zhang, Shoudong

Publication type:

Article

Orthogonal tuning of gene expression noise using CRISPR–Cas.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7606, doi. 10.1093/nar/gkaa537

By:

Wu, Fan;
Shim, Jiyoung;
Gong, Ting;
Tan, Cheemeng

Publication type:

Article

La-related protein 1 (LARP1) repression of TOP mRNA translation is mediated through its cap-binding domain and controlled by an adjacent regulatory region.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7604, doi. 10.1093/nar/gkaa535

By:

Philippe, Lucas;
Vasseur, Jean-Jacques;
Debart, Françoise;
Thoreen, Carson C

Publication type:

Article

DeepCLIP: predicting the effect of mutations on protein–RNA binding with deep learning.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7099, doi. 10.1093/nar/gkaa530

By:

Grønning, Alexander Gulliver Bjørnholt;
Doktor, Thomas Koed;
Larsen, Simon Jonas;
Petersen, Ulrika Simone Spangsberg;
Holm, Lise Lolle;
Bruun, Gitte Hoffmann;
Hansen, Michael Birkerod;
Hartung, Anne-Mette;
Baumbach, Jan;
Andresen, Brage Storstein

Publication type:

Article

Genome-wide CRISPR synthetic lethality screen identifies a role for the ADP-ribosyltransferase PARP14 in DNA replication dynamics controlled by ATR.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7252, doi. 10.1093/nar/gkaa508

By:

Dhoonmoon, Ashna;
Schleicher, Emily M;
Clements, Kristen E;
Nicolae, Claudia M;
Moldovan, George-Lucian

Publication type:

Article

Disease-associated DNA2 nuclease–helicase protects cells from lethal chromosome under-replication.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7265, doi. 10.1093/nar/gkaa524

By:

Falquet, Benoît;
Ölmezer, Gizem;
Enkner, Franz;
Klein, Dominique;
Challa, Kiran;
Appanah, Rowin;
Gasser, Susan M;
Rass, Ulrich

Publication type:

Article

Human OAS1 activation is highly dependent on both RNA sequence and context of activating RNA motifs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7520, doi. 10.1093/nar/gkaa513

By:

Schwartz, Samantha L;
Park, Esther N;
Vachon, Virginia K;
Danzy, Shamika;
Lowen, Anice C;
Conn, Graeme L

Publication type:

Article

Intrinsic disorder is essential for Cas9 inhibition of anti-CRISPR AcrIIA5.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7584, doi. 10.1093/nar/gkaa512

By:

An, So Young;
Ka, Donghyun;
Kim, Iktae;
Kim, Eun-Hee;
Kim, Nak-Kyoon;
Bae, Euiyoung;
Suh, Jeong-Yong

Publication type:

Article

gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7603, doi. 10.1093/nar/gkaa511

By:

Cheng, Liang;
Qi, Changlu;
Zhuang, He;
Fu, Tongze;
Zhang, Xue

Publication type:

Article

Phage T7 DNA mimic protein Ocr is a potent inhibitor of BREX defence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7601, doi. 10.1093/nar/gkaa510

By:

Isaev, Artem;
Drobiazko, Alena;
Sierro, Nicolas;
Gordeeva, Julia;
Yosef, Ido;
Qimron, Udi;
Ivanov, Nikolai V;
Severinov, Konstantin

Publication type:

Article

Rational design of antisense oligonucleotides modulating the activity of TLR7/8 agonists.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7052, doi. 10.1093/nar/gkaa523

By:

Alharbi, Arwaf S;
Garcin, Aurélie J;
Lennox, Kim A;
Pradeloux, Solène;
Wong, Christophe;
Straub, Sarah;
Valentin, Roxane;
Pépin, Geneviève;
Li, Hong-Mei;
Nold, Marcel F;
Nold-Petry, Claudia A;
Behlke, Mark A;
Gantier, Michael P

Publication type:

Article

Crystal structure of an atypical cobalamin riboswitch reveals RNA structural adaptability as basis for promiscuous ligand binding.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7569, doi. 10.1093/nar/gkaa507

By:

Chan, Clarence W;
Mondragón, Alfonso

Publication type:

Article

Oligonucleotides DNA containing 8-trifluoromethyl-2′-deoxyguanosine for observing Z-DNA structure.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7041, doi. 10.1093/nar/gkaa505

By:

Bao, Hong-Liang;
Masuzawa, Tatsuki;
Oyoshi, Takanori;
Xu, Yan

Publication type:

Article

3′-Terminal 2′-O-methylation of lung cancer miR-21-5p enhances its stability and association with Argonaute 2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7027, doi. 10.1093/nar/gkaa504

By:

Liang, Hongwei;
Jiao, Zichen;
Rong, Weiwei;
Qu, Shuang;
Liao, Zhicong;
Sun, Xinlei;
Wei, Yao;
Zhao, Quan;
Wang, Jun;
Liu, Yuan;
Chen, Xi;
Wang, Tao;
Zhang, Chen-Yu;
Zen, Ke

Publication type:

Article

Full length RTEL1 is required for the elongation of the single-stranded telomeric overhang by telomerase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7239, doi. 10.1093/nar/gkaa503

By:

Awad, Aya;
Glousker, Galina;
Lamm, Noa;
Tawil, Shadi;
Hourvitz, Noa;
Smoom, Riham;
Revy, Patrick;
Tzfati, Yehuda

Publication type:

Article

CLICK-17, a DNA enzyme that harnesses ultra-low concentrations of either Cu<sup>+</sup> or Cu<sup>2+</sup> to catalyze the azide-alkyne 'click' reaction in water.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7356, doi. 10.1093/nar/gkaa502

By:

Liu, Kun;
Lat, Prince Kumar;
Yu, Hua-Zhong;
Sen, Dipankar

Publication type:

Article

ATAD5 restricts R-loop formation through PCNA unloading and RNA helicase maintenance at the replication fork.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7218, doi. 10.1093/nar/gkaa501

By:

Kim, Sangin;
Kang, Nalae;
Park, Su Hyung;
Wells, James;
Hwang, Taejoo;
Ryu, Eunjin;
Kim, Byung-gyu;
Hwang, Sunyoung;
Kim, Seong-jung;
Kang, Sukhyun;
Lee, Semin;
Stirling, Peter;
Myung, Kyungjae;
Lee, Kyoo-young

Publication type:

Article

Structure-guided DNA–DNA attraction mediated by divalent cations.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7018, doi. 10.1093/nar/gkaa499

By:

Srivastava, Amit;
Timsina, Raju;
Heo, Seung;
Dewage, Sajeewa W;
Kirmizialtin, Serdal;
Qiu, Xiangyun

Publication type:

Article

Determinants of RNA recognition by the FinO domain of the Escherichia coli ProQ protein.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7502, doi. 10.1093/nar/gkaa497

By:

Stein, Ewa M;
Kwiatkowska, Joanna;
Basczok, Maciej M;
Gravel, Chandra M;
Berry, Katherine E;
Olejniczak, Mikołaj

Publication type:

Article

AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7345, doi. 10.1093/nar/gkaa496

By:

Hoitsma, Nicole M;
Whitaker, Amy M;
Beckwitt, Emily C;
Jang, Sunbok;
Agarwal, Pratul K;
Van Houten, Bennett;
Freudenthal, Bret D

Publication type:

Article

Minidumbbell structures formed by ATTCT pentanucleotide repeats in spinocerebellar ataxia type 10.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7557, doi. 10.1093/nar/gkaa495

By:

Guo, Pei;
Lam, Sik Lok

Publication type:

Article

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7545, doi. 10.1093/nar/gkaa493

By:

Huang, Lin;
Liao, Ting-Wei;
Wang, Jia;
Ha, Taekjip;
Lilley, David M J

Publication type:

Article

Two-step mechanism for selective incorporation of lncRNA into a chromatin modifier.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7483, doi. 10.1093/nar/gkaa492

By:

Müller, Marisa;
Schauer, Tamas;
Krause, Silke;
Villa, Raffaella;
Thomae, Andreas W;
Becker, Peter B

Publication type:

Article

Activation and inhibition of nonsense-mediated mRNA decay control the abundance of alternative polyadenylation products.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7468, doi. 10.1093/nar/gkaa491

By:

Kishor, Aparna;
Fritz, Sarah E;
Haque, Nazmul;
Ge, Zhiyun;
Tunc, Ilker;
Yang, Wenjing;
Zhu, Jun;
Hogg, J Robert

Publication type:

Article

Antisense oligonucleotide-mediated correction of CFTR splicing improves chloride secretion in cystic fibrosis patient-derived bronchial epithelial cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7454, doi. 10.1093/nar/gkaa490

By:

Michaels, Wren E;
Bridges, Robert J;
Hastings, Michelle L

Publication type:

Article

Allostery of DNA nanostructures controlled by enzymatic modifications.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7595, doi. 10.1093/nar/gkaa488

By:

Yan, Qi;
Wang, Yaqi;
Shi, Jile;
Wei, Bryan

Publication type:

Article

Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7532, doi. 10.1093/nar/gkaa487

By:

Zhang, Chuqiao;
Yashiro, Yuka;
Sakaguchi, Yuriko;
Suzuki, Tsutomu;
Tomita, Kozo

Publication type:

Article

Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7119, doi. 10.1093/nar/gkaa486

By:

Lorenzo, Ramiro;
Onizuka, Michiho;
Defrance, Matthieu;
Laurent, Patrick

Publication type:

Article

CLUE: a bioinformatic and wet-lab pipeline for multiplexed cloning of custom sgRNA libraries.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e78, doi. 10.1093/nar/gkaa459

By:

Becker, Martin;
Noll-Puchta, Heidi;
Amend, Diana;
Nolte, Florian;
Fuchs, Christiane;
Jeremias, Irmela;
Braun, Christian J

Publication type:

Article

Tissue- and development-stage–specific mRNA and heterogeneous CNV signatures of human ribosomal proteins in normal and cancer samples.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7079, doi. 10.1093/nar/gkaa485

By:

Panda, Anshuman;
Yadav, Anupama;
Yeerna, Huwate;
Singh, Amartya;
Biehl, Michael;
Lux, Markus;
Schulz, Alexander;
Klecha, Tyler;
Doniach, Sebastian;
Khiabanian, Hossein;
Ganesan, Shridar;
Tamayo, Pablo;
Bhanot, Gyan

Publication type:

Article

Argonaute binding within 3′-untranslated regions poorly predicts gene repression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7439, doi. 10.1093/nar/gkaa478

By:

Chu, Yongjun;
Kilikevicius, Audrius;
Liu, Jing;
Johnson, Krystal C;
Yokota, Shinnichi;
Corey, David R

Publication type:

Article

TFII-I-mediated polymerase pausing antagonizes GLI2 induction by TGFβ.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7169, doi. 10.1093/nar/gkaa476

By:

McCleary-Wheeler, Angela L;
Paradise, Brooke D;
Almada, Luciana L;
Carlson, Annika J;
Marks, David L;
Vrabel, Anne;
Vera, Renzo E;
Sigafoos, Ashley N;
Olson, Rachel L;
Fernandez-Zapico, Martin E

Publication type:

Article

G-quadruplexes offer a conserved structural motif for NONO recruitment to NEAT1 architectural lncRNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7421, doi. 10.1093/nar/gkaa475

By:

Simko, Eric A J;
Liu, Honghe;
Zhang, Tao;
Velasquez, Adan;
Teli, Shraddha;
Haeusler, Aaron R;
Wang, Jiou

Publication type:

Article

Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7154, doi. 10.1093/nar/gkaa474

By:

Sansó, Miriam;
Parua, Pabitra K;
Pinto, Daniel;
Svensson, J Peter;
Pagé, Viviane;
Bitton, Danny A;
MacKinnon, Sarah;
Garcia, Patricia;
Hidalgo, Elena;
Bähler, Jürg;
Tanny, Jason C;
Fisher, Robert P

Publication type:

Article

Hippo-YAP signaling controls lineage differentiation of mouse embryonic stem cells through modulating the formation of super-enhancers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7182, doi. 10.1093/nar/gkaa482

By:

Sun, Xiang;
Ren, Zhijun;
Cun, Yixian;
Zhao, Cai;
Huang, Xianglin;
Zhou, Jiajian;
Hu, Rong;
Su, Xiaoxi;
Ji, Lu;
Li, Peng;
Mak, King Lun Kingston;
Gao, Feng;
Yang, Yi;
Xu, He;
Ding, Junjun;
Cao, Nan;
Li, Shuo;
Zhang, Wensheng;
Lan, Ping;
Sun, Hao

Publication type:

Article

Xrn1p acts at multiple steps in the budding-yeast RNAi pathway to enhance the efficiency of silencing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7404, doi. 10.1093/nar/gkaa468

By:

Getz, Matthew A;
Weinberg, David E;
Drinnenberg, Ines A;
Fink, Gerald R;
Bartel, David P

Publication type:

Article

Structural basis for the recognition of transiently structured AU-rich elements by Roquin.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7385, doi. 10.1093/nar/gkaa465

By:

Binas, Oliver;
Tants, Jan-Niklas;
Peter, Stephen A;
Janowski, Robert;
Davydova, Elena;
Braun, Johannes;
Niessing, Dierk;
Schwalbe, Harald;
Weigand, Julia E;
Schlundt, Andreas

Publication type:

Article

Comprehensive database and evolutionary dynamics of U12-type introns.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7066, doi. 10.1093/nar/gkaa464

By:

Moyer, Devlin C;
Larue, Graham E;
Hershberger, Courtney E;
Roy, Scott W;
Padgett, Richard A

Publication type:

Article

Host cell factors stimulate HIV-1 transcription by antagonizing substrate-binding function of Siah1 ubiquitin ligase to stabilize transcription elongation factor ELL2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7321, doi. 10.1093/nar/gkaa461

By:

Wu, Jun;
Xue, Yuhua;
Gao, Xiang;
Zhou, Qiang

Publication type:

Article

DICER regulates the expression of major satellite repeat transcripts and meiotic chromosome segregation during spermatogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7135, doi. 10.1093/nar/gkaa460

By:

Yadav, Ram Prakash;
Mäkelä, Juho-Antti;
Hyssälä, Hanna;
Cisneros-Montalvo, Sheyla;
Kotaja, Noora

Publication type:

Article

DNA binds to a specific site of the adhesive blood-protein von Willebrand factor guided by electrostatic interactions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7333, doi. 10.1093/nar/gkaa466

By:

Sandoval-Pérez, Angélica;
Berger, Ricarda M L;
Garaizar, Adiran;
Farr, Stephen E;
Brehm, Maria A;
König, Gesa;
Schneider, Stefan W;
Collepardo-Guevara, Rosana;
Huck, Volker;
Rädler, Joachim O;
Aponte-Santamaría, Camilo

Publication type:

Article

Zinc finger protein ZFP36L1 inhibits influenza A virus through translational repression by targeting HA, M and NS RNA transcripts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7371, doi. 10.1093/nar/gkaa458

By:

Lin, Ren-Jye;
Huang, Chih-Heng;
Liu, Ping-Cheng;
Lin, I-Chieh;
Huang, Yu-Ling;
Chen, An-Yu;
Chiu, Hsin-Ping;
Shih, Shin-Ru;
Lin, Li-Hsiung;
Lien, Shu-Pei;
Yen, Li-Chen;
Liao, Ching-Len

Publication type:

Article

Misactivation of multiple starvation responses in yeast by loss of tRNA modifications.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7307, doi. 10.1093/nar/gkaa455

By:

Bruch, Alexander;
Laguna, Teresa;
Butter, Falk;
Schaffrath, Raffael;
Klassen, Roland

Publication type:

Article

LocalSTAR3D: a local stack-based RNA 3D structural alignment tool.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e77, doi. 10.1093/nar/gkaa453

By:

Chen, Xiaoli;
Khan, Nabila Shahnaz;
Zhang, Shaojie

Publication type:

Article

Orthogonal tuning of gene expression noise using CRISPR–Cas.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e76, doi. 10.1093/nar/gkaa451

By:

Wu, Fan;
Shim, Jiyoung;
Gong, Ting;
Tan, Cheemeng

Publication type:

Article

One fly–one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e75, doi. 10.1093/nar/gkaa450

By:

Adams, Matthew;
McBroome, Jakob;
Maurer, Nicholas;
Pepper-Tunick, Evan;
Saremi, Nedda F;
Green, Richard E;
Vollmers, Christopher;
Corbett-Detig, Russell B

Publication type:

Article

Metabolic cofactors NADH and FAD act as non-canonical initiating substrates for a primase and affect replication primer processing in vitro.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7298, doi. 10.1093/nar/gkaa447

By:

Julius, Christina;
Salgado, Paula S;
Yuzenkova, Yulia

Publication type:

Article

A memory of eS25 loss drives resistance phenotypes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7279, doi. 10.1093/nar/gkaa444

By:

Johnson, Alex G;
Flynn, Ryan A;
Lapointe, Christopher P;
Ooi, Yaw Shin;
Zhao, Michael L;
Richards, Christopher M;
Qiao, Wenjie;
Yamada, Shizuka B;
Couthouis, Julien;
Gitler, Aaron D;
Carette, Jan E;
Puglisi, Joseph D

Publication type:

Article

DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e74, doi. 10.1093/nar/gkaa426

By:

Lu, Xiang-Jun

Publication type:

Article

A multiplex platform for digital measurement of circular DNA reaction products.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. e73, doi. 10.1093/nar/gkaa419

By:

Björkesten, Johan;
Patil, Sourabh;
Fredolini, Claudia;
Lönn, Peter;
Landegren, Ulf

Publication type:

Article