Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 11

Results: 48

ZKSCAN3 counteracts cellular senescence by stabilizing heterochromatin.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6001, doi. 10.1093/nar/gkaa425

By:

Hu, Huifang;
Ji, Qianzhao;
Song, Moshi;
Ren, Jie;
Liu, Zunpeng;
Wang, Zehua;
Liu, Xiaoqian;
Yan, Kaowen;
Hu, Jianli;
Jing, Yaobin;
Wang, Si;
Zhang, Weiqi;
Liu, Guang-Hui;
Qu, Jing

Publication type:

Article

Integrating NMR and simulations reveals motions in the UUCG tetraloop.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5839, doi. 10.1093/nar/gkaa399

By:

Bottaro, Sandro;
Nichols, Parker J;
Vögeli, Beat;
Parrinello, Michele;
Lindorff-Larsen, Kresten

Publication type:

Article

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5986, doi. 10.1093/nar/gkaa384

By:

Ni, Weiya;
Perez, Andrew A;
Schreiner, Shannon;
Nicolet, Charles M;
Farnham, Peggy J

Publication type:

Article

A unified dinucleotide alphabet describing both RNA and DNA structures.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6367, doi. 10.1093/nar/gkaa383

By:

Černý, Jiří;
Božíková, Paulína;
Svoboda, Jakub;
Schneider, Bohdan

Publication type:

Article

PvrA is a novel regulator that contributes to Pseudomonas aeruginosa pathogenesis by controlling bacterial utilization of long chain fatty acids.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5967, doi. 10.1093/nar/gkaa377

By:

Pan, Xiaolei;
Fan, Zheng;
Chen, Lei;
Liu, Chang;
Bai, Fang;
Wei, Yu;
Tian, Zhenyang;
Dong, Yuanyuan;
Shi, Jing;
Chen, Hao;
Jin, Yongxin;
Cheng, Zhihui;
Jin, Shouguang;
Lin, Jianping;
Wu, Weihui

Publication type:

Article

Dynamic landscape and evolution of m6A methylation in human.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6251, doi. 10.1093/nar/gkaa347

By:

Zhang, Hui;
Shi, Xinrui;
Huang, Tao;
Zhao, Xueni;
Chen, Wanying;
Gu, Nannan;
Zhang, Rui

Publication type:

Article

Occurrence and stability of lone pair-π and OH–π interactions between water and nucleobases in functional RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5825, doi. 10.1093/nar/gkaa345

By:

Kalra, Kanav;
Gorle, Suresh;
Cavallo, Luigi;
Oliva, Romina;
Chawla, Mohit

Publication type:

Article

Primed CRISPR DNA uptake in Pyrococcus furiosus.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6120, doi. 10.1093/nar/gkaa381

By:

Garrett, Sandra;
Shiimori, Masami;
Watts, Elizabeth A;
Clark, Landon;
Graveley, Brenton R;
Terns, Michael P

Publication type:

Article

Che-1/AATF binds to RNA polymerase I machinery and sustains ribosomal RNA gene transcription.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5891, doi. 10.1093/nar/gkaa344

By:

Sorino, Cristina;
Catena, Valeria;
Bruno, Tiziana;
De Nicola, Francesca;
Scalera, Stefano;
Bossi, Gianluca;
Fabretti, Francesca;
Mano, Miguel;
De Smaele, Enrico;
Fanciulli, Maurizio;
Iezzi, Simona

Publication type:

Article

Fine-tune control of targeted RNAi efficacy by plant artificial small RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6234, doi. 10.1093/nar/gkaa343

By:

López-Dolz, Lucio;
Spada, Maria;
Daròs, José-Antonio;
Carbonell, Alberto

Publication type:

Article

RNF8 has both KU-dependent and independent roles in chromosomal break repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6032, doi. 10.1093/nar/gkaa380

By:

Tsai, Linda Jillianne;
Lopezcolorado, Felicia Wednesday;
Bhargava, Ragini;
Mendez-Dorantes, Carlos;
Jahanshir, Eva;
Stark, Jeremy M

Publication type:

Article

GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5953, doi. 10.1093/nar/gkaa369

By:

Kim, Soonkap;
Piquerez, Sophie J M;
Ramirez-Prado, Juan S;
Mastorakis, Emmanouil;
Veluchamy, Alaguraj;
Latrasse, David;
Manza-Mianza, Deborah;
Brik-Chaouche, Rim;
Huang, Ying;
Rodriguez-Granados, Natalia Y;
Concia, Lorenzo;
Blein, Thomas;
Citerne, Sylvie;
Bendahmane, Abdelhafid;
Bergounioux, Catherine;
Crespi, Martin;
Mahfouz, Magdy M;
Raynaud, Cécile;
Hirt, Heribert;
Ntoukakis, Vardis

Publication type:

Article

Protamine loops DNA in multiple steps.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6108, doi. 10.1093/nar/gkaa365

By:

Ukogu, Obinna A;
Smith, Adam D;
Devenica, Luka M;
Bediako, Hilary;
McMillan, Ryan B;
Ma, Yuxing;
Balaji, Ashwin;
Schwab, Robert D;
Anwar, Shahzad;
Dasgupta, Moumita;
Carter, Ashley R

Publication type:

Article

Histone variant H2A.Z regulates nucleosome unwrapping and CTCF binding in mouse ES cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5939, doi. 10.1093/nar/gkaa360

By:

Wen, Zengqi;
Zhang, Liwei;
Ruan, Haihe;
Li, Guohong

Publication type:

Article

Gene expression dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5926, doi. 10.1093/nar/gkaa359

By:

Levin, Michal;
Zalts, Harel;
Mostov, Natalia;
Hashimshony, Tamar;
Yanai, Itai

Publication type:

Article

Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5907, doi. 10.1093/nar/gkaa357

By:

Williams, Jonathan D;
Houserova, Dominika;
Johnson, Bradley R;
Dyniewski, Brad;
Berroyer, Alexandra;
French, Hannah;
Barchie, Addison A;
Bilbrey, Dakota D;
Demeis, Jeffrey D;
Ghee, Kanesha R;
Hughes, Alexandra G;
Kreitz, Naden W;
McInnis, Cameron H;
Pudner, Susanna C;
Reeves, Monica N;
Stahly, Ashlyn N;
Turcu, Ana;
Watters, Brianna C;
Daly, Grant T;
Langley, Raymond J

Publication type:

Article

Structural disruption of exonic stem–loops immediately upstream of the intron regulates mammalian splicing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6294, doi. 10.1093/nar/gkaa358

By:

Saha, Kaushik;
England, Whitney;
Fernandez, Mike Minh;
Biswas, Tapan;
Spitale, Robert C;
Ghosh, Gourisankar

Publication type:

Article

Prefoldins contribute to maintaining the levels of the spliceosome LSM2–8 complex through Hsp90 in Arabidopsis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6280, doi. 10.1093/nar/gkaa354

By:

Esteve-Bruna, David;
Carrasco-López, Cristian;
Blanco-Touriñán, Noel;
Iserte, Javier;
Calleja-Cabrera, Julián;
Perea-Resa, Carlos;
Úrbez, Cristina;
Carrasco, Pedro;
Yanovsky, Marcelo J;
Blázquez, Miguel A;
Salinas, Julio;
Alabadí, David

Publication type:

Article

Dun1, a Chk2-related kinase, is the central regulator of securin-separase dynamics during DNA damage signaling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6092, doi. 10.1093/nar/gkaa355

By:

Yam, Candice Qiu Xia;
Chia, David Boy;
Shi, Idina;
Lim, Hong Hwa;
Surana, Uttam

Publication type:

Article

Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6157, doi. 10.1093/nar/gkaa353

By:

Vilardo, Elisa;
Amman, Fabian;
Toth, Ursula;
Kotter, Annika;
Helm, Mark;
Rossmanith, Walter

Publication type:

Article

RPS28B mRNA acts as a scaffold promoting cis-translational interaction of proteins driving P-body assembly.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6265, doi. 10.1093/nar/gkaa352

By:

Fernandes, Nikita;
Buchan, J Ross

Publication type:

Article

DNA flowerstructure co-localizes with human pathogens in infected macrophages.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6081, doi. 10.1093/nar/gkaa341

By:

Franch, Oskar;
Gutiérrez-Corbo, Camino;
Domínguez-Asenjo, Bárbara;
Boesen, Thomas;
Jensen, Pia Bomholt;
Nejsum, Lene N;
Keller, Josephine Geertsen;
Nielsen, Simon Pagaard;
Singh, Prakruti R;
Jha, Rajiv Kumar;
Nagaraja, Valakunja;
Balaña-Fouce, Rafael;
Ho, Yi-Ping;
Reguera, Rosa María;
Knudsen, Birgitta Ruth

Publication type:

Article

Pby1 is a direct partner of the Dcp2 decapping enzyme.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6353, doi. 10.1093/nar/gkaa337

By:

Charenton, Clément;
Gaudon-Plesse, Claudine;
Back, Régis;
Ulryck, Nathalie;
Cosson, Loreline;
Séraphin, Bertrand;
Graille, Marc

Publication type:

Article

eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6223, doi. 10.1093/nar/gkaa336

By:

Lyons, Shawn M;
Kharel, Prakash;
Akiyama, Yasutoshi;
Ojha, Sandeep;
Dave, Dhwani;
Tsvetkov, Vladimir;
Merrick, William;
Ivanov, Pavel;
Anderson, Paul

Publication type:

Article

Regulation of mRNA export through API5 and nuclear FGF2 interaction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6340, doi. 10.1093/nar/gkaa335

By:

Bong, Seoung Min;
Bae, Seung-Hyun;
Song, Bomin;
Gwak, HyeRan;
Yang, Seung-Won;
Kim, Sunshin;
Nam, Seungyoon;
Rajalingam, Krishnaraj;
Oh, Se Jin;
Kim, Tae Woo;
Park, SangYoun;
Jang, Hyonchol;
Lee, Byung Il

Publication type:

Article

Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5859, doi. 10.1093/nar/gkaa334

By:

Adekunle, Danielle A;
Wang, Eric T

Publication type:

Article

Structural basis of the XPB–Bax1 complex as a dynamic helicase–nuclease machinery for DNA repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6326, doi. 10.1093/nar/gkaa324

By:

DuPrez, Kevin;
He, Feng;
Chen, Zhenhang;
Hilario, Eduardo;
Fan, Li

Publication type:

Article

GSK-3 is an RNA polymerase II phospho-CTD kinase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6068, doi. 10.1093/nar/gkaa322

By:

Nieto Moreno, Nicolás;
Villafañez, Florencia;
Giono, Luciana E;
Cuenca, Carmen;
Soria, Gastón;
Muñoz, Manuel J;
Kornblihtt, Alberto R

Publication type:

Article

Dynamic regulation of chromatin organizer SATB1 via TCR-induced alternative promoter switch during T-cell development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5873, doi. 10.1093/nar/gkaa321

By:

Patta, Indumathi;
Madhok, Ayush;
Khare, Satyajeet;
Gottimukkala, Kamalvishnu P;
Verma, Anjali;
Giri, Shilpi;
Dandewad, Vishal;
Seshadri, Vasudevan;
Lal, Girdhari;
Misra-Sen, Jyoti;
Galande, Sanjeev

Publication type:

Article

Development of a single-stranded DNA-binding protein fluorescent fusion toolbox.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6053, doi. 10.1093/nar/gkaa320

By:

Dubiel, Katarzyna;
Henry, Camille;
Spenkelink, Lisanne M;
Kozlov, Alexander G;
Wood, Elizabeth A;
Jergic, Slobodan;
Dixon, Nicholas E;
van Oijen, Antoine M;
Cox, Michael M;
Lohman, Timothy M;
Sandler, Steven J;
Keck, James L

Publication type:

Article

Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6310, doi. 10.1093/nar/gkaa318

By:

Schellenberg, Matthew J;
Appel, C Denise;
Riccio, Amanda A;
Butler, Logan R;
Krahn, Juno M;
Liebermann, Jenna A;
Cortés-Ledesma, Felipe;
Williams, R Scott

Publication type:

Article

The ribotoxin α-sarcin can cleave the sarcin/ricin loop on late 60S pre-ribosomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6210, doi. 10.1093/nar/gkaa315

By:

Olombrada, Miriam;
Peña, Cohue;
Rodríguez-Galán, Olga;
Klingauf-Nerurkar, Purnima;
Portugal-Calisto, Daniela;
Oborská-Oplová, Michaela;
Altvater, Martin;
Gavilanes, José G;
Martínez-del-Pozo, Álvaro;
de la Cruz, Jesús;
García-Ortega, Lucía;
Panse, Vikram Govind

Publication type:

Article

BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5814, doi. 10.1093/nar/gkaa314

By:

Wang, Xinjun;
Sun, Zhe;
Zhang, Yanfu;
Xu, Zhongli;
Xin, Hongyi;
Huang, Heng;
Duerr, Richard H;
Chen, Kong;
Ding, Ying;
Chen, Wei

Publication type:

Article

Group II intron as cold sensor for self-preservation and bacterial conjugation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6198, doi. 10.1093/nar/gkaa313

By:

Dong, Xiaolong;
Qu, Guosheng;
Piazza, Carol Lyn;
Belfort, Marlene

Publication type:

Article

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e66, doi. 10.1093/nar/gkaa312

By:

Maynard, Kristen R;
Tippani, Madhavi;
Takahashi, Yoichiro;
Phan, BaDoi N;
Hyde, Thomas M;
Jaffe, Andrew E;
Martinowich, Keri

Publication type:

Article

DXO/Rai1 enzymes remove 5′-end FAD and dephospho-CoA caps on RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6136, doi. 10.1093/nar/gkaa297

By:

Doamekpor, Selom K;
Grudzien-Nogalska, Ewa;
Mlynarska-Cieslak, Agnieszka;
Kowalska, Joanna;
Kiledjian, Megerditch;
Tong, Liang

Publication type:

Article

The cell line A-to-I RNA editing catalogue.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5849, doi. 10.1093/nar/gkaa305

By:

Schaffer, Amos A;
Kopel, Eli;
Hendel, Ayal;
Picardi, Ernesto;
Levanon, Erez Y;
Eisenberg, Eli

Publication type:

Article

Encoding multiple digital DNA signals in a single analog channel.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e65, doi. 10.1093/nar/gkaa303

By:

Yan, Yan Helen;
Zhang, David Yu;
Wu, Lucia R

Publication type:

Article

DIS3L2 and LSm proteins are involved in the surveillance of Sm ring-deficient snRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6184, doi. 10.1093/nar/gkaa301

By:

Roithová, Adriana;
Feketová, Zuzana;
Vaňáčová, Štěpánka;
Staněk, David

Publication type:

Article

Fuse to defuse: a self-limiting ribonuclease-ring nuclease fusion for type III CRISPR defence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6149, doi. 10.1093/nar/gkaa298

By:

Samolygo, Aleksei;
Athukoralage, Januka S;
Graham, Shirley;
White, Malcolm F

Publication type:

Article

Prp5−Spt8/Spt3 interaction mediates a reciprocal coupling between splicing and transcription.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 5799, doi. 10.1093/nar/gkaa311

By:

Shao, Wei;
Ding, Zhan;
Zheng, Zeng-Zhang;
Shen, Ji-Jia;
Shen, Yu-Xian;
Pu, Jia;
Fan, Yu-Jie;
Query, Charles C;
Xu, Yong-Zhen

Publication type:

Article

On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e64, doi. 10.1093/nar/gkaa294

By:

Calvo-Villamañán, Alicia;
Ng, Jérome Wong;
Planel, Rémi;
Ménager, Hervé;
Chen, Arthur;
Cui, Lun;
Bikard, David

Publication type:

Article

The geometric influence on the Cys2His2 zinc finger domain and functional plasticity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6382, doi. 10.1093/nar/gkaa291

By:

Mueller, April L;
Corbi-Verge, Carles;
Giganti, David O;
Ichikawa, David M;
Spencer, Jeffrey M;
MacRae, Mark;
Garton, Michael;
Kim, Philip M;
Noyes, Marcus B

Publication type:

Article

Split & mix assembly of DNA libraries for ultrahigh throughput on-bead screening of functional proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e63, doi. 10.1093/nar/gkaa270

By:

Lindenburg, Laurens;
Huovinen, Tuomas;
van de Wiel, Kayleigh;
Herger, Michael;
Snaith, Michael R;
Hollfelder, Florian

Publication type:

Article

Prediction of condition-specific regulatory genes using machine learning.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e62, doi. 10.1093/nar/gkaa264

By:

Song, Qi;
Lee, Jiyoung;
Akter, Shamima;
Rogers, Matthew;
Grene, Ruth;
Li, Song

Publication type:

Article

Harnessing intrinsic fluorescence for typing of secondary structures of DNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. e61, doi. 10.1093/nar/gkaa257

By:

Zuffo, Michela;
Gandolfini, Aurélie;
Heddi, Brahim;
Granzhan, Anton

Publication type:

Article

A critical role of telomere chromatin compaction in ALT tumor cell growth.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6019, doi. 10.1093/nar/gkaa224

By:

Shi, Guang;
Hu, Yang;
Zhu, Xing;
Jiang, Yuanling;
Pang, Junjie;
Wang, Chuanle;
Huang, Wenjun;
Zhao, Yong;
Ma, Wenbin;
Liu, Dan;
Huang, Junjiu;
Songyang, Zhou

Publication type:

Article

The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 11, p. 6170, doi. 10.1093/nar/gkaa221

By:

Pernod, Ketty;
Schaeffer, Laure;
Chicher, Johana;
Hok, Eveline;
Rick, Christian;
Geslain, Renaud;
Eriani, Gilbert;
Westhof, Eric;
Ryckelynck, Michael;
Martin, Franck

Publication type:

Article