Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP D1

Results: 170

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D693, doi. 10.1093/nar/gky999

By:

Sayers, Samantha;
Li, Li;
Ong, Edison;
Deng, Shunzhou;
Fu, Guanghua;
Lin, Yu;
Yang, Brian;
Zhang, Shelley;
Fa, Zhenzong;
Zhao, Bin;
Xiang, Zuoshuang;
Li, Yongqing;
Zhao, Xing-Ming;
Olszewski, Michal A;
Chen, Luonan;
He, Yongqun

Publication type:

Article

SSRome: an integrated database and pipelines for exploring microsatellites in all organisms.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D244, doi. 10.1093/nar/gky998

By:

Mokhtar, Morad M;
Atia, Mohamed A M

Publication type:

Article

GenBank.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D94, doi. 10.1093/nar/gky989

By:

Sayers, Eric W;
Cavanaugh, Mark;
Clark, Karen;
Ostell, James;
Pruitt, Kim D;
Karsch-Mizrachi, Ilene

Publication type:

Article

The Pfam protein families database in 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D427, doi. 10.1093/nar/gky995

By:

El-Gebali, Sara;
Mistry, Jaina;
Bateman, Alex;
Eddy, Sean R;
Luciani, Aurélien;
Potter, Simon C;
Qureshi, Matloob;
Richardson, Lorna J;
Salazar, Gustavo A;
Smart, Alfredo;
Sonnhammer, Erik L L;
Hirsh, Layla;
Paladin, Lisanna;
Piovesan, Damiano;
Tosatto, Silvio C E;
Finn, Robert D

Publication type:

Article

Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update).

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1195, doi. 10.1093/nar/gky994

By:

Böhm, Michael;
Bohne-Lang, Andreas;
Frank, Martin;
Loss, Alexander;
Rojas-Macias, Miguel A;
Lütteke, Thomas

Publication type:

Article

Database Resources of the BIG Data Center in 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D8, doi. 10.1093/nar/gky993

By:

Members, BIG Data Center

Publication type:

Article

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D614, doi. 10.1093/nar/gky992

By:

Noronha, Alberto;
Modamio, Jennifer;
Jarosz, Yohan;
Guerard, Elisabeth;
Sompairac, Nicolas;
Preciat, German;
Daníelsdóttir, Anna Dröfn;
Krecke, Max;
Merten, Diane;
Haraldsdóttir, Hulda S;
Heinken, Almut;
Heirendt, Laurent;
Magnúsdóttir, Stefanía;
Ravcheev, Dmitry A;
Sahoo, Swagatika;
Gawron, Piotr;
Friscioni, Lucia;
Garcia, Beatriz;
Prendergast, Mabel;
Puente, Alberto

Publication type:

Article

EndoDB: a database of endothelial cell transcriptomics data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D736, doi. 10.1093/nar/gky997

By:

Khan, Shawez;
Taverna, Federico;
Rohlenova, Katerina;
Treps, Lucas;
Geldhof, Vincent;
de Rooij, Laura;
Sokol, Liliana;
Pircher, Andreas;
Conradi, Lena-Christin;
Kalucka, Joanna;
Schoonjans, Luc;
Eelen, Guy;
Dewerchin, Mieke;
Karakach, Tobias;
Li, Xuri;
Goveia, Jermaine;
Carmeliet, Peter

Publication type:

Article

ETCM: an encyclopaedia of traditional Chinese medicine.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D976, doi. 10.1093/nar/gky987

By:

Xu, Hai-Yu;
Zhang, Yan-Qiong;
Liu, Zhen-Ming;
Chen, Tong;
Lv, Chuan-Yu;
Tang, Shi-Huan;
Zhang, Xiao-Bo;
Zhang, Wei;
Li, Zhi-Yong;
Zhou, Rong-Rong;
Yang, Hong-Jun;
Wang, Xiu-Jie;
Huang, Lu-Qi

Publication type:

Article

CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D50, doi. 10.1093/nar/gky986

By:

Meyer, Xavier;
Dib, Linda;
Salamin, Nicolas

Publication type:

Article

EVmiRNA: a database of miRNA profiling in extracellular vesicles.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D89, doi. 10.1093/nar/gky985

By:

Liu, Teng;
Zhang, Qiong;
Zhang, Jiankun;
Li, Chao;
Miao, Ya-Ru;
Lei, Qian;
Li, Qiubai;
Guo, An-Yuan

Publication type:

Article

PDX Finder: A portal for patient-derived tumor xenograft model discovery.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1073, doi. 10.1093/nar/gky984

By:

Conte, Nathalie;
Mason, Jeremy C;
Halmagyi, Csaba;
Neuhauser, Steven;
Mosaku, Abayomi;
Yordanova, Galabina;
Chatzipli, Aikaterini;
Begley, Dale A;
Krupke, Debra M;
Parkinson, Helen;
Meehan, Terrence F;
Bult, Carol C

Publication type:

Article

ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1164, doi. 10.1093/nar/gky983

By:

Phaneuf, Patrick V;
Gosting, Dennis;
Palsson, Bernhard O;
Feist, Adam M

Publication type:

Article

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D113, doi. 10.1093/nar/gky981

By:

Aparicio-Puerta, Ernesto;
Jáspez, David;
Lebrón, Ricardo;
Koppers-Lalic, Danijela;
Marchal, Juan A;
Hackenberg, Michael

Publication type:

Article

NucMap: a database of genome-wide nucleosome positioning map across species.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D163, doi. 10.1093/nar/gky980

By:

Zhao, Yongbing;
Wang, Jinyue;
Liang, Fang;
Liu, Yanxia;
Wang, Qi;
Zhang, Hao;
Jiang, Meiye;
Zhang, Zhewen;
Zhao, Wenming;
Bao, Yiming;
Zhang, Zhang;
Wu, Jiayan;
Asmann, Yan W;
Li, Rujiao;
Xiao, Jingfa

Publication type:

Article

RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D230, doi. 10.1093/nar/gky978

By:

Wang, Hongwei;
Yang, Ludong;
Wang, Yan;
Chen, Leshi;
Li, Huihui;
Xie, Zhi

Publication type:

Article

Genomes OnLine database (GOLD) v.7: updates and new features.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D649, doi. 10.1093/nar/gky977

By:

Mukherjee, Supratim;
Stamatis, Dimitri;
Bertsch, Jon;
Ovchinnikova, Galina;
Katta, Hema Y;
Mojica, Alejandro;
Chen, I-Min A;
Kyrpides, Nikos C;
Reddy, TBK

Publication type:

Article

BitterDB: taste ligands and receptors database in 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1179, doi. 10.1093/nar/gky974

By:

Dagan-Wiener, Ayana;
Di Pizio, Antonella;
Nissim, Ido;
Bahia, Malkeet S;
Dubovski, Nitzan;
Margulis, Eitan;
Niv, Masha Y

Publication type:

Article

CORUM: the comprehensive resource of mammalian protein complexes—2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D559, doi. 10.1093/nar/gky973

By:

Giurgiu, Madalina;
Reinhard, Julian;
Brauner, Barbara;
Dunger-Kaltenbach, Irmtraud;
Fobo, Gisela;
Frishman, Goar;
Montrone, Corinna;
Ruepp, Andreas

Publication type:

Article

CAGm: a repository of germline microsatellite variations in the 1000 genomes project.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D39, doi. 10.1093/nar/gky969

By:

Kinney, Nicholas;
Titus-Glover, Kyle;
Wren, Jonathan D;
Varghese, Robin T;
Michalak, Pawel;
Liao, Han;
Anandakrishnan, Ramu;
Pulenthiran, Arichanah;
Kang, Lin;
Garner, Harold R

Publication type:

Article

RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D601, doi. 10.1093/nar/gky967

By:

Lang, Benjamin;
Armaos, Alexandros;
Tartaglia, Gian G

Publication type:

Article

CMAUP: a database of collective molecular activities of useful plants.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1118, doi. 10.1093/nar/gky965

By:

Zeng, Xian;
Zhang, Peng;
Wang, Yali;
Qin, Chu;
Chen, Shangying;
He, Weidong;
Tao, Lin;
Tan, Ying;
Gao, Dan;
Wang, Bohua;
Chen, Zhe;
Chen, Weiping;
Jiang, Yu Yang;
Chen, Yu Zong

Publication type:

Article

ArrayExpress update – from bulk to single-cell expression data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D711, doi. 10.1093/nar/gky964

By:

Athar, Awais;
Füllgrabe, Anja;
George, Nancy;
Iqbal, Haider;
Huerta, Laura;
Ali, Ahmed;
Snow, Catherine;
Fonseca, Nuno A;
Petryszak, Robert;
Papatheodorou, Irene;
Sarkans, Ugis;
Brazma, Alvis

Publication type:

Article

DrugCentral 2018: an update.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D963, doi. 10.1093/nar/gky963

By:

Ursu, Oleg;
Holmes, Jayme;
Bologa, Cristian G;
Yang, Jeremy J;
Mathias, Stephen L;
Stathias, Vasileios;
Nguyen, Dac-Trung;
Schürer, Stephan;
Oprea, Tudor

Publication type:

Article

New approach for understanding genome variations in KEGG.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D590, doi. 10.1093/nar/gky962

By:

Kanehisa, Minoru;
Sato, Yoko;
Furumichi, Miho;
Morishima, Kanae;
Tanabe, Mao

Publication type:

Article

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D821, doi. 10.1093/nar/gky961

By:

Lock, Antonia;
Rutherford, Kim;
Harris, Midori A;
Hayles, Jacqueline;
Oliver, Stephen G;
Bähler, Jürg;
Wood, Valerie

Publication type:

Article

LncBook: a curated knowledgebase of human long non-coding RNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D128, doi. 10.1093/nar/gky960

By:

Ma, Lina;
Cao, Jiabao;
Liu, Lin;
Du, Qiang;
Li, Zhao;
Zou, Dong;
Bajic, Vladimir B;
Zhang, Zhang

Publication type:

Article

PopHumanScan: the online catalog of human genome adaptation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1080, doi. 10.1093/nar/gky959

By:

Murga-Moreno, Jesús;
Coronado-Zamora, Marta;
Bodelón, Alejandra;
Barbadilla, Antonio;
Casillas, Sònia

Publication type:

Article

Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D78, doi. 10.1093/nar/gky958

By:

Niu, Guangyi;
Zou, Dong;
Li, Mengwei;
Zhang, Yuansheng;
Sang, Jian;
Xia, Lin;
Li, Man;
Liu, Lin;
Cao, Jiabao;
Zhang, Yang;
Wang, Pei;
Hu, Songnian;
Hao, Lili;
Zhang, Zhang

Publication type:

Article

REDfly: the transcriptional regulatory element database for Drosophila.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D828, doi. 10.1093/nar/gky957

By:

Rivera, John;
Keränen, Soile V E;
Gallo, Steven M;
Halfon, Marc S

Publication type:

Article

piRTarBase: a database of piRNA targeting sites and their roles in gene regulation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D181, doi. 10.1093/nar/gky956

By:

Wu, Wei-Sheng;
Brown, Jordan S;
Chen, Tsung-Te;
Chu, Yu-Han;
Huang, Wei-Che;
Tu, Shikui;
Lee, Heng-Chi

Publication type:

Article

RaftProt V2: understanding membrane microdomain function through lipid raft proteomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D459, doi. 10.1093/nar/gky948

By:

Mohamed, Ahmed;
Shah, Anup D;
Chen, David;
Hill, Michelle M

Publication type:

Article

CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D909, doi. 10.1093/nar/gky954

By:

Tian, Jianbo;
Wang, Zhihua;
Mei, Shufang;
Yang, Nan;
Yang, Yang;
Ke, Juntao;
Zhu, Ying;
Gong, Yajie;
Zou, Danyi;
Peng, Xiating;
Wang, Xiaoyang;
Wan, Hao;
Zhong, Rong;
Chang, Jiang;
Gong, Jing;
Han, Leng;
Miao, Xiaoping

Publication type:

Article

EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D315, doi. 10.1093/nar/gky952

By:

Sarti, Edoardo;
Aleksandrova, Antoniya A;
Ganta, Srujan K;
Yavatkar, Amarendra S;
Forrest, Lucy R

Publication type:

Article

ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D859, doi. 10.1093/nar/gky951

By:

Morita, Masahiko;
Shimokawa, Kazuro;
Nishimura, Masaomi;
Nakamura, Sakiko;
Tsujimura, Yuki;
Takemoto, Satoko;
Tawara, Takehiro;
Yokota, Hideo;
Wemler, Shuhei;
Miyamoto, Daisuke;
Ikeno, Hidetoshi;
Sato, Akira;
Furuichi, Teiichi;
Kobayashi, Norio;
Okumura, Yoshihiro;
Yamaguchi, Yoko;
Okamura-Oho, Yuko

Publication type:

Article

Protein Data Bank: the single global archive for 3D macromolecular structure data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D520, doi. 10.1093/nar/gky949

By:

consortium, wwPDB

Publication type:

Article

GENCODE reference annotation for the human and mouse genomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D766, doi. 10.1093/nar/gky955

By:

Frankish, Adam;
Diekhans, Mark;
Ferreira, Anne-Maud;
Johnson, Rory;
Jungreis, Irwin;
Loveland, Jane;
Mudge, Jonathan M;
Sisu, Cristina;
Wright, James;
Armstrong, Joel;
Barnes, If;
Berry, Andrew;
Bignell, Alexandra;
Carbonell Sala, Silvia;
Chrast, Jacqueline;
Cunningham, Fiona;
Di Domenico, Tomás;
Donaldson, Sarah;
Fiddes, Ian T;
García Girón, Carlos

Publication type:

Article

OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D403, doi. 10.1093/nar/gky936

By:

Brunet, Marie A;
Brunelle, Mylène;
Lucier, Jean-François;
Delcourt, Vivian;
Levesque, Maxime;
Grenier, Frédéric;
Samandi, Sondos;
Leblanc, Sébastien;
Aguilar, Jean-David;
Dufour, Pascal;
Jacques, Jean-Francois;
Fournier, Isabelle;
Ouangraoua, Aida;
Scott, Michelle S;
Boisvert, François-Michel;
Roucou, Xavier

Publication type:

Article

EWASdb: epigenome-wide association study database.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D989, doi. 10.1093/nar/gky942

By:

liu, Di;
Zhao, Linna;
Wang, Zhaoyang;
Zhou, Xu;
Fan, Xiuzhao;
Li, Yong;
Xu, Jing;
Hu, Simeng;
Niu, Miaomiao;
Song, Xiuling;
Li, Ying;
Zuo, Lijiao;
Lei, Changgui;
Zhang, Meng;
Tang, Guoping;
Huang, Min;
Zhang, Nan;
Duan, Lian;
Lv, Hongchao;
Zhang, Mingming

Publication type:

Article

YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1245, doi. 10.1093/nar/gky941

By:

Dubreuil, Benjamin;
Sass, Ehud;
Nadav, Yotam;
Heidenreich, Meta;
Georgeson, Joseph M;
Weill, Uri;
Duan, Yuanqiang;
Meurer, Matthias;
Schuldiner, Maya;
Knop, Michael;
Levy, Emmanuel D

Publication type:

Article

RetroRules: a database of reaction rules for engineering biology.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1229, doi. 10.1093/nar/gky940

By:

Duigou, Thomas;
du Lac, Melchior;
Carbonell, Pablo;
Faulon, Jean-Loup

Publication type:

Article

CancerSEA: a cancer single-cell state atlas.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D900, doi. 10.1093/nar/gky939

By:

Yuan, Huating;
Yan, Min;
Zhang, Guanxiong;
Liu, Wei;
Deng, Chunyu;
Liao, Gaoming;
Xu, Liwen;
Luo, Tao;
Yan, Haoteng;
Long, Zhilin;
Shi, Aiai;
Zhao, Tingting;
Xiao, Yun;
Li, Xia

Publication type:

Article

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1128, doi. 10.1093/nar/gky944

By:

Zheng, Yi;
Wu, Shan;
Bai, Yang;
Sun, Honghe;
Jiao, Chen;
Guo, Shaogui;
Zhao, Kun;
Blanca, Jose;
Zhang, Zhonghua;
Huang, Sanwen;
Xu, Yong;
Weng, Yiqun;
Mazourek, Michael;
K. Reddy, Umesh;
Ando, Kaori;
McCreight, James D;
Schaffer, Arthur A;
Burger, Joseph;
Tadmor, Yaakov;
Katzir, Nurit

Publication type:

Article

Genenames.org: the HGNC and VGNC resources in 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D786, doi. 10.1093/nar/gky930

By:

Braschi, Bryony;
Denny, Paul;
Gray, Kristian;
Jones, Tamsin;
Seal, Ruth;
Tweedie, Susan;
Yates, Bethan;
Bruford, Elspeth

Publication type:

Article

The mouse Gene Expression Database (GXD): 2019 update.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D774, doi. 10.1093/nar/gky922

By:

Smith, Constance M;
Hayamizu, Terry F;
Finger, Jacqueline H;
Bello, Susan M;
McCright, Ingeborg J;
Xu, Jingxia;
Baldarelli, Richard M;
Beal, Jonathan S;
Campbell, Jeffrey;
Corbani, Lori E;
Frost, Pete J;
Lewis, Jill R;
Giannatto, Sharon C;
Miers, Dave;
Shaw, David R;
Kadin, James A;
Richardson, Joel E;
Smith, Cynthia L;
Ringwald, Martin

Publication type:

Article

KinaMetrix: a web resource to investigate kinase conformations and inhibitor space.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D361, doi. 10.1093/nar/gky916

By:

Rahman, Rayees;
Ung, Peter Man-Un;
Schlessinger, Avner

Publication type:

Article

LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1034, doi. 10.1093/nar/gky905

By:

Bao, Zhenyu;
Yang, Zhen;
Huang, Zhou;
Zhou, Yiran;
Cui, Qinghua;
Dong, Dong

Publication type:

Article

CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D63, doi. 10.1093/nar/gky904

By:

Chen, Wen;
Zhang, Guoqiang;
Li, Jing;
Zhang, Xuan;
Huang, Shulan;
Xiang, Shuanglin;
Hu, Xiang;
Liu, Changning

Publication type:

Article

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901

By:

Chen, I-Min A;
Chu, Ken;
Palaniappan, Krishna;
Pillay, Manoj;
Ratner, Anna;
Huang, Jinghua;
Huntemann, Marcel;
Varghese, Neha;
White, James R;
Seshadri, Rekha;
Smirnova, Tatyana;
Kirton, Edward;
Jungbluth, Sean P;
Woyke, Tanja;
Eloe-Fadrosh, Emiley A;
Ivanova, Natalia N;
Kyrpides, Nikos C

Publication type:

Article

CellMarker: a manually curated resource of cell markers in human and mouse.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D721, doi. 10.1093/nar/gky900

By:

Zhang, Xinxin;
Lan, Yujia;
Xu, Jinyuan;
Quan, Fei;
Zhao, Erjie;
Deng, Chunyu;
Luo, Tao;
Xu, Liwen;
Liao, Gaoming;
Yan, Min;
Ping, Yanyan;
Li, Feng;
Shi, Aiai;
Bai, Jing;
Zhao, Tingting;
Li, Xia;
Xiao, Yun

Publication type:

Article