Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 8

Results: 43

Whole genome experimental maps of DNA G-quadruplexes in multiple species.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3862, doi. 10.1093/nar/gkz179

By:

Marsico, Giovanni;
Chambers, Vicki S;
Sahakyan, Aleksandr B;
McCauley, Patrick;
Boutell, Jonathan M;
Antonio, Marco Di;
Balasubramanian, Shankar

Publication type:

Article

The WD40 domain of FBXW7 is a poly(ADP-ribose)-binding domain that mediates the early DNA damage response.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4039, doi. 10.1093/nar/gkz058

By:

Zhang, Qiang;
Mady, Ahmed S A;
Ma, Yuanyuan;
Ryan, Caila;
Lawrence, Theodore S;
Nikolovska-Coleska, Zaneta;
Sun, Yi;
Morgan, Meredith A

Publication type:

Article

Using long-read sequencing to detect imprinted DNA methylation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e46, doi. 10.1093/nar/gkz107

By:

Gigante, Scott;
Gouil, Quentin;
Lucattini, Alexis;
Keniry, Andrew;
Beck, Tamara;
Tinning, Matthew;
Gordon, Lavinia;
Woodruff, Chris;
Speed, Terence P;
Blewitt, Marnie E;
Ritchie, Matthew E

Publication type:

Article

SAM68 interaction with U1A modulates U1 snRNP recruitment and regulates mTor pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4181, doi. 10.1093/nar/gkz099

By:

Subramania, Suryasree;
Gagné, Laurence M;
Campagne, Sébastien;
Fort, Victoire;
O'Sullivan, Julia;
Mocaer, Karel;
Feldmüller, Miki;
Masson, Jean-Yves;
Allain, Frédéric H T;
Hussein, Samer M;
Huot, Marc-Étienne

Publication type:

Article

Structure, dynamics and roX2-lncRNA binding of tandem double-stranded RNA binding domains dsRBD1,2 of Drosophila helicase Maleless.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4319, doi. 10.1093/nar/gkz125

By:

Ankush Jagtap, Pravin Kumar;
Müller, Marisa;
Masiewicz, Pawel;
von Bülow, Sören;
Hollmann, Nele Merret;
Chen, Po-Chia;
Simon, Bernd;
Thomae, Andreas W;
Becker, Peter B;
Hennig, Janosch

Publication type:

Article

Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4308, doi. 10.1093/nar/gkz113

By:

Cheng, Xiankun;
Zhao, Yanxiang;
Jiang, Qingshan;
Yang, Jun;
Zhao, Wensheng;
Taylor, Ian A;
Peng, You-Liang;
Wang, Dongli;
Liu, Junfeng

Publication type:

Article

Structural basis for RNA translocation by DEAH-box ATPases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4349, doi. 10.1093/nar/gkz150

By:

Hamann, Florian;
Enders, Marieke;
Ficner, Ralf

Publication type:

Article

Sequence specific suppression of androgen receptor–DNA binding in vivo by a Py-Im polyamide.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3828, doi. 10.1093/nar/gkz153

By:

Kurmis, Alexis A;
Dervan, Peter B

Publication type:

Article

SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e48, doi. 10.1093/nar/gkz116

By:

Xie, Peng;
Gao, Mingxuan;
Wang, Chunming;
Zhang, Jianfei;
Noel, Pawan;
Yang, Chaoyong;
Von Hoff, Daniel;
Han, Haiyong;
Zhang, Michael Q;
Lin, Wei

Publication type:

Article

RNA interference may result in unexpected phenotypes in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3957, doi. 10.1093/nar/gkz154

By:

De-Souza, Evandro A;
Camara, Henrique;
Salgueiro, Willian G;
Moro, Raíssa P;
Knittel, Thiago L;
Tonon, Guilherme;
Pinto, Silas;
Pinca, Ana Paula F;
Antebi, Adam;
Pasquinelli, Amy E;
Massirer, Katlin B;
Mori, Marcelo A

Publication type:

Article

Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4111, doi. 10.1093/nar/gkz090

By:

Spenkelink, Lisanne M;
Lewis, Jacob S;
Jergic, Slobodan;
Xu, Zhi-Qiang;
Robinson, Andrew;
Dixon, Nicholas E;
van Oijen, Antoine M

Publication type:

Article

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e47, doi. 10.1093/nar/gkz114

By:

Liao, Yang;
Smyth, Gordon K;
Shi, Wei

Publication type:

Article

PrimPol is required for the maintenance of efficient nuclear and mitochondrial DNA replication in human cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4026, doi. 10.1093/nar/gkz056

By:

Bailey, Laura J;
Bianchi, Julie;
Doherty, Aidan J

Publication type:

Article

Poly(ADP-ribosyl)ation by PARP1: reaction mechanism and regulatory proteins.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3811, doi. 10.1093/nar/gkz120

By:

Alemasova, Elizaveta E;
Lavrik, Olga I

Publication type:

Article

piRNA silencing contributes to interspecies hybrid sterility and reproductive isolation in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4255, doi. 10.1093/nar/gkz130

By:

Kotov, Alexei A;
Adashev, Vladimir E;
Godneeva, Baira K;
Ninova, Maria;
Shatskikh, Aleksei S;
Bazylev, Sergei S;
Aravin, Alexei A;
Olenina, Ludmila V

Publication type:

Article

The Nup84 complex coordinates the DNA damage response to warrant genome integrity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4054, doi. 10.1093/nar/gkz066

By:

Gaillard, Hélène;
Santos-Pereira, José M;
Aguilera, Andrés

Publication type:

Article

Mycobacterium tuberculosis 6C sRNA binds multiple mRNA targets via C-rich loops independent of RNA chaperones.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4292, doi. 10.1093/nar/gkz149

By:

Mai, Juntao;
Rao, Chitong;
Watt, Jacqueline;
Sun, Xian;
Lin, Chen;
Zhang, Lu;
Liu, Jun

Publication type:

Article

MRE11 UFMylation promotes ATM activation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4124, doi. 10.1093/nar/gkz110

By:

Wang, Zhifeng;
Gong, Yamin;
Peng, Bin;
Shi, Ruifeng;
Fan, Dan;
Zhao, Hongchang;
Zhu, Min;
Zhang, Haoxing;
Lou, Zhenkun;
Zhou, Jianwei;
Zhu, Wei-Guo;
Cong, Yu-Sheng;
Xu, Xingzhi

Publication type:

Article

The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4240, doi. 10.1093/nar/gkz129

By:

Guiducci, Giulia;
Paone, Alessio;
Tramonti, Angela;
Giardina, Giorgio;
Rinaldo, Serena;
Bouzidi, Amani;
Magnifico, Maria C;
Marani, Marina;
Menendez, Javier A;
Fatica, Alessandro;
Macone, Alberto;
Armaos, Alexandros;
Tartaglia, Gian G;
Contestabile, Roberto;
Paiardini, Alessandro;
Cutruzzolà, Francesca

Publication type:

Article

LncRNA PCAT1 activates AKT and NF-κB signaling in castration-resistant prostate cancer by regulating the PHLPP/FKBP51/IKKα complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4211, doi. 10.1093/nar/gkz108

By:

Shang, Zhiqun;
Yu, Jianpeng;
Sun, Libin;
Tian, Jing;
Zhu, Shimiao;
Zhang, Boya;
Dong, Qian;
Jiang, Ning;
Flores-Morales, Amilcar;
Chang, Chawnshang;
Niu, Yuanjie

Publication type:

Article

LARP4A recognizes polyA RNA via a novel binding mechanism mediated by disordered regions and involving the PAM2w motif, revealing interplay between PABP, LARP4A and mRNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4272, doi. 10.1093/nar/gkz144

By:

Cruz-Gallardo, Isabel;
Martino, Luigi;
Kelly, Geoff;
Atkinson, R Andrew;
Trotta, Roberta;
De Tito, Stefano;
Coleman, Pierre;
Ahdash, Zainab;
Gu, Yifei;
Bui, Tam T T;
Conte, Maria R

Publication type:

Article

Interaction map of Arabidopsis Mediator complex expounding its topology.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3904, doi. 10.1093/nar/gkz122

By:

Maji, Sourobh;
Dahiya, Pradeep;
Waseem, Mohd;
Dwivedi, Nidhi;
Bhat, Divya S;
Dar, Tanvir H;
Thakur, Jitendra K

Publication type:

Article

IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4334, doi. 10.1093/nar/gkz136

By:

Dagil, Robert;
Ball, Neil J;
Ogrodowicz, Roksana W;
Hobor, Fruzsina;
Purkiss, Andrew G;
Kelly, Geoff;
Martin, Stephen R;
Taylor, Ian A;
Ramos, Andres

Publication type:

Article

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3846, doi. 10.1093/nar/gkz169

By:

Zhou, Bo;
Ho, Steve S;
Greer, Stephanie U;
Spies, Noah;
Bell, John M;
Zhang, Xianglong;
Zhu, Xiaowei;
Arthur, Joseph G;
Byeon, Seunggyu;
Pattni, Reenal;
Saha, Ishan;
Huang, Yiling;
Song, Giltae;
Perrin, Dimitri;
Wong, Wing H;
Ji, Hanlee P;
Abyzov, Alexej;
Urban, Alexander E

Publication type:

Article

FACT subunit Spt16 controls UVSSA recruitment to lesion-stalled RNA Pol II and stimulates TC-NER.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4011, doi. 10.1093/nar/gkz055

By:

Wienholz, Franziska;
Zhou, Di;
Turkyilmaz, Yasemin;
Schwertman, Petra;
Tresini, Maria;
Pines, Alex;
van Toorn, Marvin;
Bezstarosti, Karel;
Demmers, Jeroen A A;
Marteijn, Jurgen A

Publication type:

Article

Enzyme-free ligation of dimers and trimers to RNA primers.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3836, doi. 10.1093/nar/gkz160

By:

Sosson, Marilyne;
Pfeffer, Daniel;
Richert, Clemens

Publication type:

Article

Enhanced Cas12a editing in mammalian cells and zebrafish.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4169, doi. 10.1093/nar/gkz184

By:

Liu, Pengpeng;
Luk, Kevin;
Shin, Masahiro;
Idrizi, Feston;
Kwok, Samantha;
Roscoe, Benjamin;
Mintzer, Esther;
Suresh, Sneha;
Morrison, Kyle;
Frazão, Josias B;
Bolukbasi, Mehmet Fatih;
Ponnienselvan, Karthikeyan;
Luban, Jeremy;
Zhu, Lihua Julie;
Lawson, Nathan D;
Wolfe, Scot A

Publication type:

Article

En bloc and segmental deletions of human XIST reveal X chromosome inactivation-involving RNA elements.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3875, doi. 10.1093/nar/gkz109

By:

Lee, Hyeon J;
Gopalappa, Ramu;
Sunwoo, Hongjae;
Choi, Seo-Won;
Ramakrishna, Suresh;
Lee, Jeannie T;
Kim, Hyongbum H;
Nam, Jin-Wu

Publication type:

Article

Effects on prostate cancer cells of targeting RNA polymerase III.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3937, doi. 10.1093/nar/gkz128

By:

Petrie, John L;
Swan, Caroline;
Ingram, Richard M;
Frame, Fiona M;
Collins, Anne T;
Dumay-Odelot, Hélène;
Teichmann, Martin;
Maitland, Norman J;
White, Robert J

Publication type:

Article

Deoxyuridine in DNA has an inhibitory and promutagenic effect on RNA transcription by diverse RNA polymerases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4153, doi. 10.1093/nar/gkz183

By:

Cui, Junru;
Gizzi, Anthony;
Stivers, James T

Publication type:

Article

Diminished OPA1 expression and impaired mitochondrial morphology and homeostasis in Aprataxin-deficient cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4086, doi. 10.1093/nar/gkz083

By:

Zheng, Jin;
Croteau, Deborah L;
Bohr, Vilhelm A;
Akbari, Mansour

Publication type:

Article

Differences in the path to exit the ribosome across the three domains of life.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4198, doi. 10.1093/nar/gkz106

By:

Dao Duc, Khanh;
Batra, Sanjit S;
Bhattacharya, Nicholas;
Cate, Jamie H D;
Song, Yun S

Publication type:

Article

Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4068, doi. 10.1093/nar/gkz076

By:

Alfano, Luigi;
Caporaso, Antonella;
Altieri, Angela;
Dell'Aquila, Milena;
Landi, Claudia;
Bini, Luca;
Pentimalli, Francesca;
Giordano, Antonio

Publication type:

Article

Depletion of S-adenosylmethionine impacts on ribosome biogenesis through hypomodification of a single rRNA methylation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4226, doi. 10.1093/nar/gkz111

By:

Ishiguro, Kensuke;
Arai, Taiga;
Suzuki, Tsutomu

Publication type:

Article

DriverML: a machine learning algorithm for identifying driver genes in cancer sequencing studies.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e45, doi. 10.1093/nar/gkz096

By:

Han, Yi;
Yang, Juze;
Qian, Xinyi;
Cheng, Wei-Chung;
Liu, Shu-Hsuan;
Hua, Xing;
Zhou, Liyuan;
Yang, Yaning;
Wu, Qingbiao;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3970, doi. 10.1093/nar/gkz159

By:

Sun, Zhe;
Cagliero, Cedric;
Izard, Jerome;
Chen, Yixiong;
Zhou, Yan Ning;
Heinz, William F;
Schneider, Thomas D;
Jin, Ding Jun

Publication type:

Article

Delivering SaCas9 mRNA by lentivirus-like bionanoparticles for transient expression and efficient genome editing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e44, doi. 10.1093/nar/gkz093

By:

Lu, Baisong;
Javidi-Parsijani, Parisa;
Makani, Vishruti;
Mehraein-Ghomi, Farideh;
Sarhan, Walaa Mohamed;
Sun, Dongjun;
Yoo, Kyung Whan;
Atala, Zachary P;
Lyu, Pin;
Atala, Anthony

Publication type:

Article

CPPred: coding potential prediction based on the global description of RNA sequence.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. e43, doi. 10.1093/nar/gkz087

By:

Tong, Xiaoxue;
Liu, Shiyong

Publication type:

Article

A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3888, doi. 10.1093/nar/gkz119

By:

Gopalakrishnan, Rajaraman;
Marr, Sharon K;
Kingston, Robert E;
Winston, Fred

Publication type:

Article

Conditional degradation of SDE2 by the Arg/N-End rule pathway regulates stress response at replication forks.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3996, doi. 10.1093/nar/gkz054

By:

Rageul, Julie;
Park, Jennifer J;
Jo, Ukhyun;
Weinheimer, Alexandra S;
Vu, Tri T M;
Kim, Hyungjin

Publication type:

Article

The CDK7 inhibitor THZ1 alters RNA polymerase dynamics at the 5′ and 3′ ends of genes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3921, doi. 10.1093/nar/gkz127

By:

Sampathi, Shilpa;
Acharya, Pankaj;
Zhao, Yue;
Wang, Jing;
Stengel, Kristy R;
Liu, Qi;
Savona, Michael R;
Hiebert, Scott W

Publication type:

Article

The ATPase mechanism of UvrA<sub>2</sub> reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4136, doi. 10.1093/nar/gkz180

By:

Case, Brandon C;
Hartley, Silas;
Osuga, Memie;
Jeruzalmi, David;
Hingorani, Manju M

Publication type:

Article

The absence of the catalytic domains of Saccharomyces cerevisiae DNA polymerase ϵ strongly reduces DNA replication fidelity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 3986, doi. 10.1093/nar/gkz048

By:

Garbacz, Marta A;
Cox, Phillip B;
Sharma, Sushma;
Lujan, Scott A;
Chabes, Andrei;
Kunkel, Thomas A

Publication type:

Article