Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 4

Results: 44

Regulation of ATR activity via the RNA polymerase II associated factors CDC73 and PNUTS-PP1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1797, doi. 10.1093/nar/gky1233

By:

Landsverk, Helga B;
Sandquist, Lise E;
Sridhara, Sreerama C;
Rødland, Gro Elise;
Sabino, João C;
de Almeida, Sérgio F;
Grallert, Beata;
Trinkle-Mulcahy, Laura;
Syljuåsen, Randi G

Publication type:

Article

Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e20, doi. 10.1093/nar/gky1204

By:

Riemondy, Kent A;
Ransom, Monica;
Alderman, Christopher;
Gillen, Austin E;
Fu, Rui;
Finlay-Schultz, Jessica;
Kirkpatrick, Gregory D;
Di Paola, Jorge;
Kabos, Peter;
Sartorius, Carol A;
Hesselberth, Jay R

Publication type:

Article

Random mutagenesis of a hyperthermophilic archaeon identified tRNA modifications associated with cellular hyperthermotolerance.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1964, doi. 10.1093/nar/gky1313

By:

Orita, Izumi;
Futatsuishi, Ryohei;
Adachi, Kyoko;
Ohira, Takayuki;
Kaneko, Akira;
Minowa, Keiichi;
Suzuki, Miho;
Tamura, Takeshi;
Nakamura, Satoshi;
Imanaka, Tadayuki;
Suzuki, Tsutomu;
Fukui, Toshiaki

Publication type:

Article

Processing of eukaryotic Okazaki fragments by redundant nucleases can be uncoupled from ongoing DNA replication in vivo.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1814, doi. 10.1093/nar/gky1242

By:

Kahli, Malik;
Osmundson, Joseph S;
Yeung, Rani;
Smith, Duncan J

Publication type:

Article

Rapid formylation of the cellular initiator tRNA population makes a crucial contribution to its exclusive participation at the step of initiation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1908, doi. 10.1093/nar/gky1310

By:

Shah, Riyaz Ahmad;
Varada, Rajagopal;
Sah, Shivjee;
Shetty, Sunil;
Lahry, Kuldeep;
Singh, Sudhir;
Varshney, Umesh

Publication type:

Article

ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1896, doi. 10.1093/nar/gky1289

By:

Bluhm, Alina;
Viceconte, Nikenza;
Li, Fudong;
Rane, Grishma;
Ritz, Sandra;
Wang, Suman;
Levin, Michal;
Shi, Yunyu;
Kappei, Dennis;
Butter, Falk

Publication type:

Article

WisecondorX: improved copy number detection for routine shallow whole-genome sequencing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1605, doi. 10.1093/nar/gky1263

By:

Raman, Lennart;
Dheedene, Annelies;
De Smet, Matthias;
Van Dorpe, Jo;
Menten, Björn

Publication type:

Article

Unexpected diversity in eukaryotic transcription revealed by the retrotransposon hotspot family of Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1725, doi. 10.1093/nar/gky1255

By:

Florini, Francesca;
Naguleswaran, Arunasalam;
Gharib, Walid H;
Bringaud, Frédéric;
Roditi, Isabel

Publication type:

Article

TFforge utilizes large-scale binding site divergence to identify transcriptional regulators involved in phenotypic differences.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e19, doi. 10.1093/nar/gky1200

By:

Langer, Björn E;
Hiller, Michael

Publication type:

Article

Structure–function relationship in the 'termination upstream ribosomal binding site' of the calicivirus rabbit hemorrhagic disease virus.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1920, doi. 10.1093/nar/gkz021

By:

Wennesz, René;
Luttermann, Christine;
Kreher, Felix;
Meyers, Gregor

Publication type:

Article

Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1987, doi. 10.1093/nar/gky1181

By:

Tunnicliffe, Richard B;
Levy, Colin;
Ruiz Nivia, Hilda D;
Sandri-Goldin, Rozanne M;
Golovanov, Alexander P

Publication type:

Article

Structural heterogeneity of attC integron recombination sites revealed by optical tweezers.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1861, doi. 10.1093/nar/gky1258

By:

Mukhortava, Ann;
Pöge, Matthias;
Grieb, Maj Svea;
Nivina, Aleksandra;
Loot, Celine;
Mazel, Didier;
Schlierf, Michael

Publication type:

Article

Structural basis for effects of CpA modifications on C/EBPβ binding of DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1774, doi. 10.1093/nar/gky1264

By:

Yang, Jie;
Horton, John R;
Wang, Dongxue;
Ren, Ren;
Li, Jia;
Sun, Deqiang;
Huang, Yun;
Zhang, Xing;
Blumenthal, Robert M;
Cheng, Xiaodong

Publication type:

Article

Single cell analysis reveals the involvement of the long non-coding RNA Pvt1 in the modulation of muscle atrophy and mitochondrial network.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1653, doi. 10.1093/nar/gkz007

By:

Alessio, Enrico;
Buson, Lisa;
Chemello, Francesco;
Peggion, Caterina;
Grespi, Francesca;
Martini, Paolo;
Massimino, Maria L;
Pacchioni, Beniamina;
Millino, Caterina;
Romualdi, Chiara;
Bertoli, Alessandro;
Scorrano, Luca;
Lanfranchi, Gerolamo;
Cagnin, Stefano

Publication type:

Article

Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1637, doi. 10.1093/nar/gky1314

By:

Pradhan, Mohan R;
Siau, Jia Wei;
Kannan, Srinivasaraghavan;
Nguyen, Minh N;
Ouaray, Zohra;
Kwoh, Chee Keong;
Lane, David P;
Ghadessy, Farid;
Verma, Chandra S

Publication type:

Article

Sensitive ADAR editing reporter in cancer cells enables high-throughput screening of small molecule libraries.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e22, doi. 10.1093/nar/gky1228

By:

Fritzell, Kajsa;
Xu, Li-Di;
Otrocka, Magdalena;
Andréasson, Claes;
Öhman, Marie

Publication type:

Article

RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2130, doi. 10.1093/nar/gky1259

By:

Travis, Brady;
Shaw, Porsha L R;
Liu, Bei;
Ravindra, Krishna;
Iliff, Hadley;
Al-Hashimi, Hashim M;
Schumacher, Maria A

Publication type:

Article

role for 3′ exonucleases at the final stages of chromosome duplication in Escherichia coli.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1847, doi. 10.1093/nar/gky1253

By:

Midgley-Smith, Sarah L;
Dimude, Juachi U;
Rudolph, Christian J

Publication type:

Article

RNA-binding protein RPS3 contributes to hepatocarcinogenesis by post-transcriptionally up-regulating SIRT1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2011, doi. 10.1093/nar/gky1209

By:

Zhao, Lijun;
Cao, Jianzhong;
Hu, Kexin;
Wang, Penghui;
Li, Guodong;
He, Xiaodong;
Tong, Tanjun;
Han, Limin

Publication type:

Article

Resolution of the Holliday junction recombination intermediate by human GEN1 at the single-molecule level.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1935, doi. 10.1093/nar/gky1280

By:

Sobhy, Mohamed A;
Bralić, Amer;
Raducanu, Vlad-Stefan;
Takahashi, Masateru;
Tehseen, Muhammad;
Rashid, Fahad;
Zaher, Manal S;
Hamdan, Samir M

Publication type:

Article

positioning of Chi sites allows the RecBCD pathway to suppress some genomic rearrangements.

Published in:: Nucleic Acids Research, 2019, v. 47, n. 4, p. 1836, doi. 10.1093/nar/gky1252
Publication type:: Article

Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1880, doi. 10.1093/nar/gky1261

By:

Palm, Denise;
Streit, Deniz;
Shanmugam, Thiruvenkadam;
Weis, Benjamin L;
Ruprecht, Maike;
Simm, Stefan;
Schleiff, Enrico

Publication type:

Article

PCNA accelerates the nucleotide incorporation rate by DNA polymerase δ.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1977, doi. 10.1093/nar/gky1321

By:

Mondol, Tanumoy;
Stodola, Joseph L;
Galletto, Roberto;
Burgers, Peter M

Publication type:

Article

novel Staphylococcus aureus cis–trans type I toxin–antitoxin module with dual effects on bacteria and host cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1759, doi. 10.1093/nar/gky1257

By:

Germain-Amiot, Noëlla;
Augagneur, Yoann;
Camberlein, Emilie;
Nicolas, Irène;
Lecureur, Valérie;
Rouillon, Astrid;
Felden, Brice

Publication type:

Article

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2089, doi. 10.1093/nar/gky1211

By:

Melnikov, Sergey V;
Khabibullina, Nelli F;
Mairhofer, Elisabeth;
Vargas-Rodriguez, Oscar;
Reynolds, Noah M;
Micura, Ronald;
Söll, Dieter;
Polikanov, Yury S

Publication type:

Article

light-responsive RNA aptamer for an azobenzene derivative.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2029, doi. 10.1093/nar/gky1225

By:

Lotz, Thea S;
Halbritter, Thomas;
Kaiser, Christoph;
Rudolph, Martin M;
Kraus, Leon;
Groher, Florian;
Steinwand, Sabrina;
Wachtveitl, Josef;
Heckel, Alexander;
Suess, Beatrix

Publication type:

Article

map of direct TF–DNA interactions in the human genome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e21, doi. 10.1093/nar/gky1210

By:

Gheorghe, Marius;
Sandve, Geir Kjetil;
Khan, Aziz;
Chèneby, Jeanne;
Ballester, Benoit;
Mathelier, Anthony

Publication type:

Article

cell-based splicing reporter system to identify regulators of cis-splicing between adjacent genes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e24, doi. 10.1093/nar/gky1288

By:

Chwalenia, Katarzyna;
Qin, Fujun;
Singh, Sandeep;
Li, Hui

Publication type:

Article

Functionality and cross-regulation of the four SprG/SprF type I toxin–antitoxin systems in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1740, doi. 10.1093/nar/gky1256

By:

Riffaud, Camille;
Pinel-Marie, Marie-Laure;
Pascreau, Gaëtan;
Felden, Brice

Publication type:

Article

Intrinsically disordered regions regulate both catalytic and non-catalytic activities of the MutLα mismatch repair complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1823, doi. 10.1093/nar/gky1244

By:

Kim, Yoori;
Furman, Christopher M;
Manhart, Carol M;
Alani, Eric;
Finkelstein, Ilya J

Publication type:

Article

Heterodimeric DNA motif synthesis and validations.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1628, doi. 10.1093/nar/gky1297

By:

Wong, Ka-Chun;
Lin, Jiecong;
Li, Xiangtao;
Lin, Qiuzhen;
Liang, Cheng;
Song, You-Qiang

Publication type:

Article

Functional expansion of a TCA cycle operon mRNA by a 3′ end-derived small RNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2075, doi. 10.1093/nar/gky1243

By:

Miyakoshi, Masatoshi;
Matera, Gianluca;
Maki, Kanako;
Sone, Yasuhiro;
Vogel, Jörg

Publication type:

Article

FOXO1 degradation via G9a-mediated methylation promotes cell proliferation in colon cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1692, doi. 10.1093/nar/gky1230

By:

Chae, Yun-Cheol;
Kim, Ji-Young;
Park, Jin Woo;
Kim, Kee-Beom;
Oh, Hyein;
Lee, Kyung-Hwa;
Seo, Sang-Beom

Publication type:

Article

Factor cooperation for chromosome discrimination in Drosophila.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1706, doi. 10.1093/nar/gky1238

By:

Albig, Christian;
Tikhonova, Evgeniya;
Krause, Silke;
Maksimenko, Oksana;
Regnard, Catherine;
Becker, Peter B

Publication type:

Article

Dynamics of intracellular stress-induced tRNA trafficking.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2002, doi. 10.1093/nar/gky1208

By:

Dhakal, Rabin;
Tong, Chunyi;
Anderson, Sean;
Kashina, Anna S;
Cooperman, Barry;
Bau, Haim H

Publication type:

Article

DNA replication initiation in Bacillus subtilis : structural and functional characterization of the essential DnaA–DnaD interaction.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2101, doi. 10.1093/nar/gky1220

By:

Martin, Eleyna;
Williams, Huw E L;
Pitoulias, Matthaios;
Stevens, Daniel;
Winterhalter, Charles;
Craggs, Timothy D;
Murray, Heath;
Searle, Mark S;
Soultanas, Panos

Publication type:

Article

Differential regulation of RNA polymerase III genes during liver regeneration.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1786, doi. 10.1093/nar/gky1282

By:

Yeganeh, Meghdad;
Praz, Viviane;
Carmeli, Cristian;
Villeneuve, Dominic;
Rib, Leonor;
Guex, Nicolas;
Herr, Winship;
Delorenzi, Mauro;
Hernandez, Nouria

Publication type:

Article

Crystal structures of Hp Soj–DNA complexes and the nucleoid-adaptor complex formation in chromosome segregation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2113, doi. 10.1093/nar/gky1251

By:

Chu, Chen-Hsi;
Yen, Cheng-Yi;
Chen, Bo-Wei;
Lin, Min-Guan;
Wang, Lyu-Han;
Tang, Kai-Zhi;
Hsiao, Chwan-Deng;
Sun, Yuh-Ju

Publication type:

Article

Crystal structure of the Redβ C-terminal domain in complex with λ Exonuclease reveals an unexpected homology with λ Orf and an interaction with Escherichia coli single stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1950, doi. 10.1093/nar/gky1309

By:

Caldwell, Brian J;
Zakharova, Ekaterina;
Filsinger, Gabriel T;
Wannier, Timothy M;
Hempfling, Jordan P;
Chun-Der, Lee;
Pei, Dehua;
Church, George M;
Bell, Charles E

Publication type:

Article

Creation of versatile cloning platforms for transgene expression and dCas9-based epigenome editing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. e23, doi. 10.1093/nar/gky1286

By:

Haldeman, Jonathan M;
Conway, Amanda E;
Arlotto, Michelle E;
Slentz, Dorothy H;
Muoio, Deborah M;
Becker, Thomas C;
Newgard, Christopher B

Publication type:

Article

coronary artery disease-associated tRNA Thr mutation altered mitochondrial function, apoptosis and angiogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2056, doi. 10.1093/nar/gky1241

By:

Jia, Zidong;
Zhang, Ye;
Li, Qiang;
Ye, Zhenzhen;
Liu, Yuqi;
Fu, Changzhu;
Cang, Xiaohui;
Wang, Meng;
Guan, Min-Xin

Publication type:

Article

Comprehensive profiling of the fission yeast transcription start site activity during stress and media response.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1671, doi. 10.1093/nar/gky1227

By:

Thodberg, Malte;
Thieffry, Axel;
Bornholdt, Jette;
Boyd, Mette;
Holmberg, Christian;
Azad, Ajuna;
Workman, Christopher T;
Chen, Yun;
Ekwall, Karl;
Nielsen, Olaf;
Sandelin, Albin

Publication type:

Article

Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 1615, doi. 10.1093/nar/gky1268

By:

Huckaby, Adam C;
Granum, Claire S;
Carey, Maureen A;
Szlachta, Karol;
Al-Barghouthi, Basel;
Wang, Yuh-Hwa;
Guler, Jennifer L

Publication type:

Article

Archaeal NSUN6 catalyzes m 5 C72 modification on a wide-range of specific tRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 4, p. 2041, doi. 10.1093/nar/gky1236

By:

Li, Jing;
Li, Hao;
Long, Tao;
Dong, Han;
Wang, En-Duo;
Liu, Ru-Juan

Publication type:

Article