Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 20

Results: 46

The glucocorticoid receptor interferes with progesterone receptor-dependent genomic regulation in breast cancer cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10645, doi. 10.1093/nar/gkz857

By:

Ogara, Maria F;
Rodríguez-Seguí, Santiago A;
Marini, Melisa;
Nacht, Ana Silvina;
Stortz, Martin;
Levi, Valeria;
Presman, Diego M;
Vicent, Guillermo P;
Pecci, Adali

Publication type:

Article

Understanding the binding specificities of mRNA targets by the mammalian Quaking protein.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10564, doi. 10.1093/nar/gkz877

By:

Sharma, Monika;
Sharma, Shakshi;
Alawada, Apoorv

Publication type:

Article

Star-PAP controlled alternative polyadenylation coupled poly(A) tail length regulates protein expression in hypertrophic heart.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10771, doi. 10.1093/nar/gkz875

By:

Sudheesh, A P;
Mohan, Nimmy;
Francis, Nimmy;
Laishram, Rakesh S;
Anderson, Richard A

Publication type:

Article

Modifying a covarying protein–DNA interaction changes substrate preference of a site-specific endonuclease.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10830, doi. 10.1093/nar/gkz866

By:

Laforet, Marc;
McMurrough, Thomas A;
Vu, Michael;
Brown, Christopher M;
Zhang, Kun;
Junop, Murray S;
Gloor, Gregory B;
Edgell, David R

Publication type:

Article

Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10942, doi. 10.1093/nar/gkz856

By:

Hirata, Akira;
Okada, Keisuke;
Yoshii, Kazuaki;
Shiraishi, Hiroyuki;
Saijo, Shinya;
Yonezawa, Kento;
Shimizu, Nobutaka;
Hori, Hiroyuki

Publication type:

Article

Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10477, doi. 10.1093/nar/gkz855

By:

Baez, William D;
Roy, Bappaditya;
McNutt, Zakkary A;
Shatoff, Elan A;
Chen, Shicheng;
Bundschuh, Ralf;
Fredrick, Kurt

Publication type:

Article

Systematic search for structural motifs of peptide binding to double-stranded DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10553, doi. 10.1093/nar/gkz850

By:

Kolchina, Nina;
Khavinson, Vladimir;
Linkova, Natalia;
Yakimov, Alexander;
Baitin, Dmitry;
Afanasyeva, Arina;
Petukhov, Michael

Publication type:

Article

Bacterial cell cycle and growth phase switch by the essential transcriptional regulator CtrA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10628, doi. 10.1093/nar/gkz846

By:

Delaby, Marie;
Panis, Gaël;
Viollier, Patrick H

Publication type:

Article

Thermal cycling of DNA devices via associative strand displacement.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10968, doi. 10.1093/nar/gkz844

By:

Hahn, Jaeseung;
Shih, William M

Publication type:

Article

Structural basis for 2′-deoxyguanosine recognition by the 2′-dG-II class of riboswitches.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10931, doi. 10.1093/nar/gkz839

By:

Matyjasik, Michal M;
Batey, Robert T

Publication type:

Article

Structure and function of the Toscana virus cap-snatching endonuclease.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10914, doi. 10.1093/nar/gkz838

By:

Jones, Rhian;
Lessoued, Sana;
Meier, Kristina;
Devignot, Stéphanie;
Barata-García, Sergio;
Mate, Maria;
Bragagnolo, Gabriel;
Weber, Friedemann;
Rosenthal, Maria;
Reguera, Juan

Publication type:

Article

New substituted quinoxalines inhibit triple-negative breast cancer by specifically downregulating the c-MYC transcription.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10529, doi. 10.1093/nar/gkz835

By:

Hu, Ming-Hao;
Wu, Tian-Ying;
Huang, Qiong;
Jin, Guangyi

Publication type:

Article

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10543, doi. 10.1093/nar/gkz833

By:

Donath, Alexander;
Jühling, Frank;
Al-Arab, Marwa;
Bernhart, Stephan H;
Reinhardt, Franziska;
Stadler, Peter F;
Middendorf, Martin;
Bernt, Matthias

Publication type:

Article

Structural insights into synthetic ligands targeting A–A pairs in disease-related CAG RNA repeats.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10906, doi. 10.1093/nar/gkz832

By:

Mukherjee, Sanjukta;
Błaszczyk, Leszek;
Rypniewski, Wojciech;
Falschlunger, Christoph;
Micura, Ronald;
Murata, Asako;
Dohno, Chikara;
Nakatani, Kazuhiko;
Kiliszek, Agnieszka

Publication type:

Article

Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10506, doi. 10.1093/nar/gkz831

By:

Martínez, Miguel Angel;
Jordan-Paiz, Ana;
Franco, Sandra;
Nevot, Maria

Publication type:

Article

AID–RNA polymerase II transcription-dependent deamination of IgV DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10815, doi. 10.1093/nar/gkz821

By:

Pham, Phuong;
Malik, Sohail;
Mak, Chiho;
Calabrese, Peter C;
Roeder, Robert G;
Goodman, Myron F

Publication type:

Article

Cell-free expression of RNA encoded genes using MS2 replicase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10956, doi. 10.1093/nar/gkz817

By:

Weise, Laura I;
Heymann, Michael;
Mayr, Viktoria;
Mutschler, Hannes

Publication type:

Article

Histone deacetylase 3 controls a transcriptional network required for B cell maturation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10612, doi. 10.1093/nar/gkz816

By:

Stengel, Kristy R;
Bhaskara, Srividya;
Wang, Jing;
Liu, Qi;
Ellis, Jacob D;
Sampathi, Shilpa;
Hiebert, Scott W

Publication type:

Article

RNA binding candidates for human ADAR3 from substrates of a gain of function mutant expressed in neuronal cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10801, doi. 10.1093/nar/gkz815

By:

Wang, Yuru;
Chung, Dong hee;
Monteleone, Leanna R;
Li, Jie;
Chiang, Yao;
Toney, Michael D;
Beal, Peter A

Publication type:

Article

Phosphorylation of Drosophila CENP-A on serine 20 regulates protein turn-over and centromere-specific loading.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10754, doi. 10.1093/nar/gkz809

By:

Huang, Anming;
Kremser, Leopold;
Schuler, Fabian;
Wilflingseder, Doris;
Lindner, Herbert;
Geley, Stephan;
Lusser, Alexandra

Publication type:

Article

Functional interpretation of genetic variants using deep learning predicts impact on chromatin accessibility and histone modification.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10597, doi. 10.1093/nar/gkz808

By:

Hoffman, Gabriel E;
Bendl, Jaroslav;
Girdhar, Kiran;
Schadt, Eric E;
Roussos, Panos

Publication type:

Article

Quantifying the impact of small molecule ligands on G-quadruplex stability against Bloom helicase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10744, doi. 10.1093/nar/gkz803

By:

Maleki, Parastoo;
Mustafa, Golam;
Gyawali, Prabesh;
Budhathoki, Jagat B;
Ma, Yue;
Nagasawa, Kazuo;
Balci, Hamza

Publication type:

Article

Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10580, doi. 10.1093/nar/gkz799

By:

Nordström, Karl J V;
Schmidt, Florian;
Gasparoni, Nina;
Salhab, Abdulrahman;
Gasparoni, Gilles;
Kattler, Kathrin;
Müller, Fabian;
Ebert, Peter;
Costa, Ivan G;
consortium, DEEP;
Pfeifer, Nico;
Lengauer, Thomas;
Schulz, Marcel H;
Walter, Jörn

Publication type:

Article

SINEUP non-coding RNAs rescue defective frataxin expression and activity in a cellular model of Friedreich's Ataxia.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10728, doi. 10.1093/nar/gkz798

By:

Bon, Carlotta;
Luffarelli, Riccardo;
Russo, Roberta;
Fortuni, Silvia;
Pierattini, Bianca;
Santulli, Chiara;
Fimiani, Cristina;
Persichetti, Francesca;
Cotella, Diego;
Mallamaci, Antonello;
Santoro, Claudio;
Carninci, Piero;
Espinoza, Stefano;
Testi, Roberto;
Zucchelli, Silvia;
Condò, Ivano;
Gustincich, Stefano

Publication type:

Article

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10788, doi. 10.1093/nar/gkz797

By:

Craggs, Timothy D;
Sustarsic, Marko;
Plochowietz, Anne;
Mosayebi, Majid;
Kaju, Hendrik;
Cuthbert, Andrew;
Hohlbein, Johannes;
Domicevica, Laura;
Biggin, Philip C;
Doye, Jonathan P K;
Kapanidis, Achillefs N

Publication type:

Article

PP4 phosphatase cooperates in recombinational DNA repair by enhancing double-strand break end resection.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10706, doi. 10.1093/nar/gkz794

By:

Villoria, María Teresa;
Gutiérrez-Escribano, Pilar;
Alonso-Rodríguez, Esmeralda;
Ramos, Facundo;
Merino, Eva;
Campos, Adrián;
Montoya, Alex;
Kramer, Holger;
Aragón, Luis;
Clemente-Blanco, Andrés

Publication type:

Article

A polar filter in DNA polymerases prevents ribonucleotide incorporation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10693, doi. 10.1093/nar/gkz792

By:

Johnson, Mary K;
Kottur, Jithesh;
Nair, Deepak T

Publication type:

Article

iRAPs curb antisense transcription in E. coli.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10894, doi. 10.1093/nar/gkz791

By:

Magán, Andrés;
Amman, Fabian;
El-Isa, Fatinah;
Hartl, Natascha;
Shamovsky, Ilya;
Nudler, Evgeny;
Schroeder, Renée;
Sedlyarova, Nadezda

Publication type:

Article

Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10881, doi. 10.1093/nar/gkz787

By:

Nousch, Marco;
Yeroslaviz, Assa;
Eckmann, Christian R

Publication type:

Article

CSB interacts with BRCA1 in late S/G2 to promote MRN- and CtIP-mediated DNA end resection.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10678, doi. 10.1093/nar/gkz784

By:

Batenburg, Nicole L;
Walker, John R;
Coulombe, Yan;
Sherker, Alana;
Masson, Jean-Yves;
Zhu, Xu-Dong

Publication type:

Article

A global functional analysis of missense mutations reveals two major hotspots in the PALB2 tumor suppressor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10662, doi. 10.1093/nar/gkz780

By:

Rodrigue, Amélie;
Margaillan, Guillaume;
Torres Gomes, Thiago;
Coulombe, Yan;
Montalban, Gemma;
da Costa e Silva Carvalho, Simone;
Milano, Larissa;
Ducy, Mandy;
De-Gregoriis, Giuliana;
Dellaire, Graham;
Araújo da Silva Jr, Wilson;
Monteiro, Alvaro N;
Carvalho, Marcelo A;
Simard, Jacques;
Masson, Jean-Yves

Publication type:

Article

Kinetic and subcellular analysis of PS-ASO/protein interactions with P54nrb and RNase H1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10865, doi. 10.1093/nar/gkz771

By:

Vickers, Timothy A;
Rahdar, Meghdad;
Prakash, Thazha P;
Crooke, Stanley T

Publication type:

Article

At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10852, doi. 10.1093/nar/gkz767

By:

Gnanasundram, Sivakumar Vadivel;
Kos-Braun, Isabelle C;
Koš, Martin

Publication type:

Article

Dynamics of the DEAD-box ATPase Prp5 RecA-like domains provide a conformational switch during spliceosome assembly.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10842, doi. 10.1093/nar/gkz765

By:

Beier, David H;
Carrocci, Tucker J;
van der Feltz, Clarisse;
Tretbar, U Sandy;
Paulson, Joshua C;
Grabowski, Nikolai;
Hoskins, Aaron A

Publication type:

Article

Robust gene expression control in human cells with a novel universal TetR aptamer splicing module.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e132, doi. 10.1093/nar/gkz753

By:

Mol, Adam A;
Groher, Florian;
Schreiber, Britta;
Rühmkorff, Ciaran;
Suess, Beatrix

Publication type:

Article

CRISPR/dual-FRET molecular beacon for sensitive live-cell imaging of non-repetitive genomic loci.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e131, doi. 10.1093/nar/gkz752

By:

Mao, Shiqi;
Ying, Yachen;
Wu, Xiaotian;
Krueger, Christopher J;
Chen, Antony K

Publication type:

Article

A general LC-MS-based RNA sequencing method for direct analysis of multiple-base modifications in RNA mixtures.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e125, doi. 10.1093/nar/gkz731

By:

Zhang, Ning;
Shi, Shundi;
Jia, Tony Z;
Ziegler, Ashley;
Yoo, Barney;
Yuan, Xiaohong;
Li, Wenjia;
Zhang, Shenglong

Publication type:

Article

Training-free measures based on algorithmic probability identify high nucleosome occupancy in DNA sequences.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e129, doi. 10.1093/nar/gkz750

By:

Zenil, Hector;
Minary, Peter

Publication type:

Article

Machine learning-based chemical binding similarity using evolutionary relationships of target genes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e128, doi. 10.1093/nar/gkz743

By:

Park, Keunwan;
Ko, Young-Joon;
Durai, Prasannavenkatesh;
Pan, Cheol-Ho

Publication type:

Article

BioSeq-Analysis2.0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning approaches.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e127, doi. 10.1093/nar/gkz740

By:

Liu, Bin;
Gao, Xin;
Zhang, Hanyu

Publication type:

Article

Detection of internal N7-methylguanosine (m<sup>7</sup>G) RNA modifications by mutational profiling sequencing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e126, doi. 10.1093/nar/gkz736

By:

Enroth, Christel;
Poulsen, Line Dahl;
Iversen, Søren;
Kirpekar, Finn;
Albrechtsen, Anders;
Vinther, Jeppe

Publication type:

Article

Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e130, doi. 10.1093/nar/gkz751

By:

Wang, Jin;
Alvin Chew, Bing Liang;
Lai, Yong;
Dong, Hongping;
Xu, Luang;
Balamkundu, Seetharamsingh;
Cai, Weiling Maggie;
Cui, Liang;
Liu, Chuan Fa;
Fu, Xin-Yuan;
Lin, Zhenguo;
Shi, Pei-Yong;
Lu, Timothy K;
Luo, Dahai;
Jaffrey, Samie R;
Dedon, Peter C

Publication type:

Article

iDamage: a method to integrate modified DNA into the yeast genome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e124, doi. 10.1093/nar/gkz723

By:

Masłowska, Katarzyna H;
Laureti, Luisa;
Pagès, Vincent

Publication type:

Article

Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. e123, doi. 10.1093/nar/gkz718

By:

Humphreys, David T;
Fossat, Nicolas;
Demuth, Madeleine;
Tam, Patrick P L;
Ho, Joshua W K

Publication type:

Article

DNA nanotechnology approaches for microRNA detection and diagnosis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10489, doi. 10.1093/nar/gkz580

By:

Chandrasekaran, Arun Richard;
Punnoose, Jibin Abraham;
Zhou, Lifeng;
Dey, Paromita;
Dey, Bijan K;
Halvorsen, Ken

Publication type:

Article

Targeted live-cell nuclear delivery of the DNA 'light-switching' Ru(II) complex via ion-pairing with chlorophenolate counter-anions: the critical role of binding stability and lipophilicity of the ion-pairing complexes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10520, doi. 10.1093/nar/gkz152

By:

Chao, Xi-Juan;
Tang, Miao;
Huang, Rong;
Huang, Chun-Hua;
Shao, Jie;
Yan, Zhu-Ying;
Zhu, Ben-Zhan

Publication type:

Article