Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7809, doi. 10.1093/nar/gkz672
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- Publication type:
- Article
Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 15
Results: 49
1
2
Weaving DNA strands: structural insight on ATP hydrolysis in RecA-induced homologous recombination.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7798, doi. 10.1093/nar/gkz667
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- Article
3
COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8335, doi. 10.1093/nar/gkz663
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- Article
4
A hidden human proteome encoded by 'non-coding' genes.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8111, doi. 10.1093/nar/gkz646
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- Article
5
Metal sensing and regulation of adaptive responses to manganese limitation by MtsR is critical for group A streptococcus virulence.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8333, doi. 10.1093/nar/gkz641
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- Article
6
Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7753, doi. 10.1093/nar/gkz638
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- Article
7
DAXX in cancer: phenomena, processes, mechanisms and regulation.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7734, doi. 10.1093/nar/gkz634
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8
μLAS technology for DNA isolation coupled to Cas9-assisted targeting for sequencing and assembly of a 30 kb region in plant genome.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8050, doi. 10.1093/nar/gkz632
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9
An expanded landscape of human long noncoding RNA.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7842, doi. 10.1093/nar/gkz621
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- Article
10
DNA complexes with human apurinic/apyrimidinic endonuclease 1: structural insights revealed by pulsed dipolar EPR with orthogonal spin labeling.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7767, doi. 10.1093/nar/gkz620
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- Article
11
The human 18S rRNA m<sup>6</sup>A methyltransferase METTL5 is stabilized by TRMT112.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7719, doi. 10.1093/nar/gkz619
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- Article
12
DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7781, doi. 10.1093/nar/gkz617
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- Article
13
CNBP controls transcription by unfolding DNA G-quadruplex structures.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7901, doi. 10.1093/nar/gkz527
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- Article
14
Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7886, doi. 10.1093/nar/gkz526
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- Article
15
SIRT7 mediates L1 elements transcriptional repression and their association with the nuclear lamina.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7870, doi. 10.1093/nar/gkz519
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- Article
16
The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7857, doi. 10.1093/nar/gkz511
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- Article
17
Double-strand breaks in ribosomal RNA genes activate a distinct signaling and chromatin response to facilitate nucleolar restructuring and repair.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8019, doi. 10.1093/nar/gkz518
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- Article
18
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7825, doi. 10.1093/nar/gkz603
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- Article
19
ULK1 phosphorylates Mad1 to regulate spindle assembly checkpoint.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8096, doi. 10.1093/nar/gkz602
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- Article
20
Insights into the G-rich VEGF-binding aptamer V7t1: when two G-quadruplexes are better than one!
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8318, doi. 10.1093/nar/gkz589
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- Article
21
TERC promotes cellular inflammatory response independent of telomerase.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8084, doi. 10.1093/nar/gkz584
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- Article
22
The role of ZAP and OAS3/RNAseL pathways in the attenuation of an RNA virus with elevated frequencies of CpG and UpA dinucleotides.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8061, doi. 10.1093/nar/gkz581
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23
A complex suite of loci and elements in eukaryotic type II topoisomerases determine selective sensitivity to distinct poisoning agents.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8163, doi. 10.1093/nar/gkz579
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24
From general base to general acid catalysis in a sodium-specific DNAzyme by a guanine-to-adenine mutation.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8154, doi. 10.1093/nar/gkz578
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25
DNA processing by the MOB<sub>H</sub> family relaxase TraI encoded within the gonococcal genetic island.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8136, doi. 10.1093/nar/gkz577
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26
Role of Era in assembly and homeostasis of the ribosomal small subunit.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8301, doi. 10.1093/nar/gkz571
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27
Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8282, doi. 10.1093/nar/gkz570
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28
A conserved RNA structure is essential for a satellite RNA-mediated inhibition of helper virus accumulation.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8255, doi. 10.1093/nar/gkz564
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- Article
29
Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8036, doi. 10.1093/nar/gkz553
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30
Targeted DNA transposition in vitro using a dCas9-transposase fusion protein.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8126, doi. 10.1093/nar/gkz552
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31
The nucleosome position-encoding WW/SS sequence pattern is depleted in mammalian genes relative to other eukaryotes.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7942, doi. 10.1093/nar/gkz544
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- Article
32
XAB2 depletion induces intron retention in POLR2A to impair global transcription and promote cellular senescence.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8239, doi. 10.1093/nar/gkz532
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- Article
33
Regulation of bistability in the std fimbrial operon of Salmonella enterica by DNA adenine methylation and transcription factors HdfR, StdE and StdF.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7929, doi. 10.1093/nar/gkz530
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34
SIRT6 promotes transcription of a subset of NRF2 targets by mono-ADP-ribosylating BAF170.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7914, doi. 10.1093/nar/gkz528
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35
Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8004, doi. 10.1093/nar/gkz591
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36
DEAD-box helicase eIF4A2 inhibits CNOT7 deadenylation activity.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8224, doi. 10.1093/nar/gkz509
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- Article
37
Characterization of the stimulators of protein-directed ribosomal frameshifting in Theiler's murine encephalomyelitis virus.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8207, doi. 10.1093/nar/gkz503
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38
A DEAD-box protein regulates ribosome assembly through control of ribosomal protein synthesis.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8193, doi. 10.1093/nar/gkz502
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39
Profiling the genome-wide landscape of tandem repeat expansions.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. e90, doi. 10.1093/nar/gkz501
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- Article
40
Enzyme-free optical DNA mapping of the human genome using competitive binding.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. e89, doi. 10.1093/nar/gkz489
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- Article
41
Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7989, doi. 10.1093/nar/gkz487
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- Publication type:
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42
The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8180, doi. 10.1093/nar/gkz486
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43
APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. e88, doi. 10.1093/nar/gkz485
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44
A kinetochore-based ATM/ATR-independent DNA damage checkpoint maintains genomic integrity in trypanosomes.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7973, doi. 10.1093/nar/gkz476
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- Publication type:
- Article
45
Highly efficient editing of the β-globin gene in patient-derived hematopoietic stem and progenitor cells to treat sickle cell disease.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. 7955, doi. 10.1093/nar/gkz475
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46
High efficiency error suppression for accurate detection of low-frequency variants.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. e87, doi. 10.1093/nar/gkz474
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- Article
47
The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics.
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- Nucleic Acids Research, 2019, v. 47, n. 15, p. e86, doi. 10.1093/nar/gkz464
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48
Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. e85, doi. 10.1093/nar/gkz435
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49
NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 15, p. 8272, doi. 10.1093/nar/gkz349
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- Publication type:
- Article