Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 12

Results: 46

Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6114, doi. 10.1093/nar/gkz471

By:

Hwang, Soonkyu;
Lee, Namil;
Jeong, Yujin;
Lee, Yongjae;
Kim, Woori;
Cho, Suhyung;
Palsson, Bernhard O;
Cho, Byung-Kwan

Publication type:

Article

Thermodynamically stable and genetically unstable G-quadruplexes are depleted in genomes across species.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6098, doi. 10.1093/nar/gkz463

By:

Puig Lombardi, Emilia;
Holmes, Allyson;
Verga, Daniela;
Teulade-Fichou, Marie-Paule;
Nicolas, Alain;
Londoño-Vallejo, Arturo

Publication type:

Article

Eukaryotic initiation factor (eIF) 3 mediates Barley Yellow Dwarf Viral mRNA 3′–5′ UTR interactions and 40S ribosomal subunit binding to facilitate cap-independent translation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6225, doi. 10.1093/nar/gkz448

By:

Bhardwaj, Usha;
Powell, Paul;
Goss, Dixie J

Publication type:

Article

Sequence motifs recognized by the casposon integrase of Aciduliprofundum boonei.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6386, doi. 10.1093/nar/gkz447

By:

Béguin, Pierre;
Chekli, Yankel;
Sezonov, Guennadi;
Forterre, Patrick;
Krupovic, Mart

Publication type:

Article

long noncoding RNA cluster-based genomic locus maintains proper development and visual function.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6315, doi. 10.1093/nar/gkz444

By:

Wang, Fei;
Ren, Dalong;
Liang, Xiaolin;
Ke, Shengwei;
Zhang, Bowen;
Hu, Bing;
Song, Xiaoyuan;
Wang, Xiangting

Publication type:

Article

LeuRS can leucylate type I and type II tRNA Leu s in Streptomyces coelicolor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6369, doi. 10.1093/nar/gkz443

By:

Fan, Jia-Yi;
Huang, Qian;
Ji, Quan-Quan;
Wang, En-Duo

Publication type:

Article

SuhB is an integral part of the ribosomal antitermination complex and interacts with NusA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6504, doi. 10.1093/nar/gkz442

By:

Dudenhoeffer, Benjamin R;
Schneider, Hans;
Schweimer, Kristian;
Knauer, Stefan H

Publication type:

Article

Conformational communication mediates the reset step in t 6 A biosynthesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6551, doi. 10.1093/nar/gkz439

By:

Luthra, Amit;
Paranagama, Naduni;
Swinehart, William;
Bayooz, Susan;
Phan, Phuc;
Quach, Vanessa;
Schiffer, Jamie M;
Stec, Boguslaw;
Iwata-Reuyl, Dirk;
Swairjo, Manal A

Publication type:

Article

Pattern preferences of DNA nucleotide motifs by polyamines putrescine 2+ , spermidine 3+ and spermine 4+.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6084, doi. 10.1093/nar/gkz434

By:

Perepelytsya, Sergiy;
Uličný, Jozef;
Laaksonen, Aatto;
Mocci, Francesca

Publication type:

Article

new normalization for Nanostring nCounter gene expression data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6073, doi. 10.1093/nar/gkz433

By:

Molania, Ramyar;
Gagnon-Bartsch, Johann A;
Dobrovic, Alexander;
Speed, Terence P

Publication type:

Article

Probing G-quadruplex topologies and recognition concurrently in real time and 3D using a dual-app nucleoside probe.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6059, doi. 10.1093/nar/gkz419

By:

Nuthanakanti, Ashok;
Ahmed, Ishtiyaq;
Khatik, Saddam Y;
Saikrishnan, Kayarat;
Srivatsan, Seergazhi G

Publication type:

Article

Delicate structural coordination of the Severe Acute Respiratory Syndrome coronavirus Nsp13 upon ATP hydrolysis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6538, doi. 10.1093/nar/gkz409

By:

Jia, Zhihui;
Yan, Liming;
Ren, Zhilin;
Wu, Lijie;
Wang, Jin;
Guo, Jing;
Zheng, Litao;
Ming, Zhenhua;
Zhang, Lianqi;
Lou, Zhiyong;
Rao, Zihe

Publication type:

Article

Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6360, doi. 10.1093/nar/gkz408

By:

Scott, Shane;
Shaheen, Cynthia;
McGuinness, Brendon;
Metera, Kimberly;
Kouzine, Fedor;
Levens, David;
Benham, Craig J;
Leslie, Sabrina

Publication type:

Article

DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6519, doi. 10.1093/nar/gkz406

By:

Cuppari, Anna;
Fernández-Millán, Pablo;
Battistini, Federica;
Tarrés-Solé, Aleix;
Lyonnais, Sébastien;
Iruela, Guillermo;
Ruiz-López, Elena;
Enciso, Yuliana;
Rubio-Cosials, Anna;
Prohens, Rafel;
Pons, Miquel;
Alfonso, Carlos;
Tóth, Katalin;
Rivas, Germán;
Orozco, Modesto;
Solà, Maria

Publication type:

Article

Structure and mechanism of pyrimidine–pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6015, doi. 10.1093/nar/gkz359

By:

Paul, Debamita;
Mu, Hong;
Zhao, Hong;
Ouerfelli, Ouathek;
Jeffrey, Philip D;
Broyde, Suse;
Min, Jung-Hyun

Publication type:

Article

Chromatin remodeler Ep400 ensures oligodendrocyte survival and is required for myelination in the vertebrate central nervous system.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6208, doi. 10.1093/nar/gkz376

By:

Elsesser, Olga;
Fröb, Franziska;
Küspert, Melanie;
Tamm, Ernst R;
Fujii, Toshihiro;
Fukunaga, Rikiro;
Wegner, Michael

Publication type:

Article

Chromatin condensation fluctuations rather than steady-state predict chromatin accessibility.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6184, doi. 10.1093/nar/gkz373

By:

Audugé, Nicolas;
Padilla-Parra, Sergi;
Tramier, Marc;
Borghi, Nicolas;
Coppey-Moisan, Maïté

Publication type:

Article

Rapid functional activation of a horizontally transferred eukaryotic gene in a bacterial genome in the absence of selection.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6351, doi. 10.1093/nar/gkz370

By:

Li, Zhichao;
Bock, Ralph

Publication type:

Article

ATP-dependent chromatin remodelling enzyme Uls1 prevents Topoisomerase II poisoning.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6172, doi. 10.1093/nar/gkz362

By:

Swanston, Amy;
Zabrady, Katerina;
Ferreira, Helder C

Publication type:

Article

Conjugation of hydrophobic moieties enhances potency of antisense oligonucleotides in the muscle of rodents and non-human primates.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6045, doi. 10.1093/nar/gkz360

By:

Østergaard, Michael E;
Jackson, Michaela;
Low, Audrey;
E. Chappell, Alfred;
G. Lee, Richard;
Peralta, Rachel Q;
Yu, Jinghua;
Kinberger, Garth A;
Dan, Amy;
Carty, Rick;
Tanowitz, Michael;
Anderson, Patrick;
Kim, Tae-Won;
Fradkin, Linda;
Mullick, Adam E;
Murray, Sue;
Rigo, Frank;
Prakash, Thazha P;
Bennett, C Frank;
Swayze, Eric E

Publication type:

Article

Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6195, doi. 10.1093/nar/gkz374

By:

Socol, Marius;
Wang, Renjie;
Jost, Daniel;
Carrivain, Pascal;
Vaillant, Cédric;
Le Cam, Eric;
Dahirel, Vincent;
Normand, Christophe;
Bystricky, Kerstin;
Victor, Jean-Marc;
Gadal, Olivier;
Bancaud, Aurélien

Publication type:

Article

Fatty acid conjugation enhances potency of antisense oligonucleotides in muscle.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6029, doi. 10.1093/nar/gkz354

By:

Prakash, Thazha P;
Mullick, Adam E;
Lee, Richard G;
Yu, Jinghua;
Yeh, Steve T;
Low, Audrey;
Chappell, Alfred E;
Østergaard, Michael E;
Murray, Sue;
Gaus, Hans J;
Swayze, Eric E;
Seth, Punit P

Publication type:

Article

Yeast applied readthrough inducing system (YARIS): an invivo assay for the comprehensive study of translational readthrough.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6339, doi. 10.1093/nar/gkz346

By:

Beznosková, Petra;
Pavlíková, Zuzana;
Zeman, Jakub;
Echeverría Aitken, Colin;
Valášek, Leoš S

Publication type:

Article

c-MYC empowers transcription and productive splicing of the oncogenic splicing factor Sam68 in cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6160, doi. 10.1093/nar/gkz344

By:

Caggiano, Cinzia;
Pieraccioli, Marco;
Panzeri, Valentina;
Sette, Claudio;
Bielli, Pamela

Publication type:

Article

Histone H1.5 binds over splice sites in chromatin and regulates alternative splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6145, doi. 10.1093/nar/gkz338

By:

Glaich, Ohad;
Leader, Yodfat;
Lev Maor, Galit;
Ast, Gil

Publication type:

Article

Nonsense mutation-dependent reinitiation of translation in mammalian cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6330, doi. 10.1093/nar/gkz319

By:

Cohen, Sarit;
Kramarski, Lior;
Levi, Shahar;
Deshe, Noa;
Ben David, Oshrit;
Arbely, Eyal

Publication type:

Article

Unprecedented tunability of riboswitch structure and regulatory function by sub-millimolar variations in physiological Mg 2+.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6478, doi. 10.1093/nar/gkz316

By:

McCluskey, Kaley;
Boudreault, Julien;
St-Pierre, Patrick;
Perez-Gonzalez, Cibran;
Chauvier, Adrien;
Rizzi, Adrien;
Beauregard, Pascale B;
Lafontaine, Daniel A;
Penedo, J Carlos

Publication type:

Article

Real-time analysis of single influenza virus replication complexes reveals large promoter-dependent differences in initiation dynamics.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6466, doi. 10.1093/nar/gkz313

By:

Robb, Nicole C;
te Velthuis, Aartjan J W;
Fodor, Ervin;
Kapanidis, Achillefs N

Publication type:

Article

Zfp217 mediates m 6 A mRNA methylation to orchestrate transcriptional and post-transcriptional regulation to promote adipogenic differentiation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6130, doi. 10.1093/nar/gkz312

By:

Song, Tongxing;
Yang, Yang;
Wei, Hongkui;
Xie, Xiaowei;
Lu, Jinxin;
Zeng, Qianhui;
Peng, Jie;
Zhou, Yuanfei;
Jiang, Siwen;
Peng, Jian

Publication type:

Article

Molecular determinants of metazoan tricRNA biogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6452, doi. 10.1093/nar/gkz311

By:

Schmidt, Casey A;
Giusto, Joseph D;
Bao, Alicia;
Hopper, Anita K;
Matera, A Gregory

Publication type:

Article

De novo phosphorylation of H2AX by WSTF regulates transcription-coupled homologous recombination repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6299, doi. 10.1093/nar/gkz309

By:

Ji, Jae-Hoon;
Min, Sunwoo;
Chae, Sunyoung;
Ha, Geun-Hyoung;
Kim, Yonghyeon;
Park, Yeon-Ji;
Lee, Chang-Woo;
Cho, Hyeseong

Publication type:

Article

Responsive self-assembly of tectoRNAs with loop–receptor interactions from the tetrahydrofolate (THF) riboswitch.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6439, doi. 10.1093/nar/gkz304

By:

Mitchell, Charles;
Polanco, Julio A;
DeWald, Laura;
Kress, Dustin;
Jaeger, Luc;
Grabow, Wade W

Publication type:

Article

Single-molecule live cell imaging of Rep reveals the dynamic interplay between an accessory replicative helicase and the replisome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6287, doi. 10.1093/nar/gkz298

By:

Syeda, Aisha H;
Wollman, Adam J M;
Hargreaves, Alex L;
Howard, Jamieson A L;
Brüning, Jan-Gert;
McGlynn, Peter;
Leake, Mark C

Publication type:

Article

Stability and sub-cellular localization of DNA polymerase β is regulated by interactions with NQO1 and XRCC1 in response to oxidative stress.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6269, doi. 10.1093/nar/gkz293

By:

Fang, Qingming;
Andrews, Joel;
Sharma, Nidhi;
Wilk, Anna;
Clark, Jennifer;
Slyskova, Jana;
Koczor, Christopher A;
Lans, Hannes;
Prakash, Aishwarya;
Sobol, Robert W

Publication type:

Article

Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6488, doi. 10.1093/nar/gkz290

By:

Huang, Yong-Heng;
Said, Nelly;
Loll, Bernhard;
Wahl, Markus C

Publication type:

Article

screening platform to monitor RNA processing and protein-RNA interactions in ribonuclease P uncovers a small molecule inhibitor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6425, doi. 10.1093/nar/gkz285

By:

Madrigal-Carrillo, Ezequiel-Alejandro;
Díaz-Tufinio, Carlos-Alejandro;
Santamaría-Suárez, Hugo-Aníbal;
Arciniega, Marcelino;
Torres-Larios, Alfredo

Publication type:

Article

telomeric Cdc13–Stn1–Ten1 complex regulates RNA polymerase II transcription.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6250, doi. 10.1093/nar/gkz279

By:

Calvo, Olga;
Grandin, Nathalie;
Jordán-Pla, Antonio;
Miñambres, Esperanza;
González-Polo, Noelia;
Pérez-Ortín, José E;
Charbonneau, Michel

Publication type:

Article

TNRC6 proteins modulate hepatitis C virus replication by spatially regulating the binding of miR-122/Ago2 complexes to viral RNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6411, doi. 10.1093/nar/gkz278

By:

Li, You;
Wang, Li;
Rivera-Serrano, Efraín E;
Chen, Xian;
Lemon, Stanley M

Publication type:

Article

Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6396, doi. 10.1093/nar/gkz274

By:

Melior, Hendrik;
Li, Siqi;
Madhugiri, Ramakanth;
Stötzel, Maximilian;
Azarderakhsh, Saina;
Barth-Weber, Susanne;
Baumgardt, Kathrin;
Ziebuhr, John;
Evguenieva-Hackenberg, Elena

Publication type:

Article

LC8/DYNLL1 is a 53BP1 effector and regulates checkpoint activation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. 6236, doi. 10.1093/nar/gkz263

By:

West, Kirk L;
Kelliher, Jessica L;
Xu, Zhanzhan;
An, Liwei;
Reed, Megan R;
Eoff, Robert L;
Wang, Jiadong;
Huen, Michael S Y;
Leung, Justin W C

Publication type:

Article

integrative method to predict signalling perturbations for cellular transitions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e72, doi. 10.1093/nar/gkz232

By:

Zaffaroni, Gaia;
Okawa, Satoshi;
Morales-Ruiz, Manuel;
del Sol, Antonio

Publication type:

Article

In vitro isolation of class-specific oligonucleotide-based small-molecule receptors.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e71, doi. 10.1093/nar/gkz224

By:

Yang, Weijuan;
Yu, Haixiang;
Alkhamis, Obtin;
Liu, Yingzhu;
Canoura, Juan;
Fu, Fengfu;
Xiao, Yi

Publication type:

Article

Generally applicable transcriptome-wide analysis of translation using anota2seq.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e70, doi. 10.1093/nar/gkz223

By:

Oertlin, Christian;
Lorent, Julie;
Murie, Carl;
Furic, Luc;
Topisirovic, Ivan;
Larsson, Ola

Publication type:

Article

PIXUL-ChIP: integrated high-throughput sample preparation and analytical platform for epigenetic studies.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e69, doi. 10.1093/nar/gkz222

By:

Bomsztyk, Karol;
Mar, Daniel;
Wang, Yuliang;
Denisenko, Oleg;
Ware, Carol;
Frazar, Christian D;
Blattler, Adam;
Maxwell, Adam D;
MacConaghy, Brian E;
Matula, Thomas J

Publication type:

Article

DNA barcodes for rapid, whole genome, single-molecule analyses.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e68, doi. 10.1093/nar/gkz212

By:

Wand, Nathaniel O;
Smith, Darren A;
Wilkinson, Andrew A;
Rushton, Ashleigh E;
Busby, Stephen J W;
Styles, Iain B;
Neely, Robert K

Publication type:

Article

Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 12, p. e67, doi. 10.1093/nar/gkz210

By:

Brown, Alexander;
Winter, Jackson;
Gapinske, Michael;
Tague, Nathan;
Woods, Wendy S;
Perez-Pinera, Pablo

Publication type:

Article