Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 10

Results: 48

HRP3 PWWP domain recognizes the minor groove of double-stranded DNA and recruits HRP3 to chromatin.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5436, doi. 10.1093/nar/gkz294

By:

Tian, Wei;
Yan, Peiqiang;
Xu, Ning;
Chakravorty, Arghya;
Liefke, Robert;
Xi, Qiaoran;
Wang, Zhanxin

Publication type:

Article

Emerging roles of histone modifications and HDACs in RNA splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4911, doi. 10.1093/nar/gkz292

By:

Rahhal, Raneen;
Seto, Edward

Publication type:

Article

Conformational tuning of a DNA-bound transcription factor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5429, doi. 10.1093/nar/gkz291

By:

Sicoli, Giuseppe;
Vezin, Hervé;
Ledolter, Karin;
Kress, Thomas;
Kurzbach, Dennis

Publication type:

Article

'Why genes in pieces?'—revisited.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4970, doi. 10.1093/nar/gkz284

By:

Smithers, Ben;
Oates, Matt;
Gough, Julian

Publication type:

Article

Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5449, doi. 10.1093/nar/gkz280

By:

Dimas, Rey P;
Jiang, Xian-Li;
Alberto de la Paz, Jose;
Morcos, Faruck;
Chan, Clement T Y

Publication type:

Article

Hybrid-type and two-tetrad antiparallel telomere DNA G-quadruplex structures in living human cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4940, doi. 10.1093/nar/gkz276

By:

Bao, Hong-Liang;
Liu, Hong-shan;
Xu, Yan

Publication type:

Article

Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5420, doi. 10.1093/nar/gkz269

By:

Zhang, Heng;
Dong, Cheng;
Li, Li;
Wasney, Gregory A;
Min, Jinrong

Publication type:

Article

Bacterial Ligase D preternary-precatalytic complex performs efficient abasic sites processing at double strand breaks during nonhomologous end joining.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5276, doi. 10.1093/nar/gkz265

By:

de Ory, Ana;
Carabaña, Claudia;
de Vega, Miguel

Publication type:

Article

Mammalian CST averts replication failure by preventing G-quadruplex accumulation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5243, doi. 10.1093/nar/gkz264

By:

Zhang, Miaomiao;
Wang, Bing;
Li, Tingfang;
Liu, Rui;
Xiao, Yingnan;
Geng, Xin;
Li, Guang;
Liu, Qiang;
Price, Carolyn M;
Liu, Yang;
Wang, Feng

Publication type:

Article

BRCA1 -associated R-loop affects transcription and differentiation in breast luminal epithelial cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5086, doi. 10.1093/nar/gkz262

By:

Chiang, Huai-Chin;
Zhang, Xiaowen;
Li, Jingwei;
Zhao, Xiayan;
Chen, Jerry;
Wang, Howard T-H;
Jatoi, Ismail;
Brenner, Andrew;
Hu, Yanfen;
Li, Rong

Publication type:

Article

Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5193, doi. 10.1093/nar/gkz261

By:

Castelo-Szekely, Violeta;
De Matos, Mara;
Tusup, Marina;
Pascolo, Steve;
Ule, Jernej;
Gatfield, David

Publication type:

Article

Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5231, doi. 10.1093/nar/gkz260

By:

Reuß, Daniel R;
Faßhauer, Patrick;
Mroch, Philipp Joel;
Ul-Haq, Inam;
Koo, Byoung-Mo;
Pöhlein, Anja;
Gross, Carol A;
Daniel, Rolf;
Brantl, Sabine;
Stülke, Jörg

Publication type:

Article

new function of copper zinc superoxide dismutase: as a regulatory DNA-binding protein in gene expression in response to intracellular hydrogen peroxide.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5074, doi. 10.1093/nar/gkz256

By:

Li, Xiang;
Qiu, Shuang;
Shi, Jiayuan;
Wang, Shanshan;
Wang, Mingfang;
Xu, Yulin;
Nie, Zefeng;
Liu, Chunrong;
Liu, Changlin

Publication type:

Article

Single-stranded regions modulate conformational dynamics and ATPase activity of eIF4A to optimize 5′-UTR unwinding.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5260, doi. 10.1093/nar/gkz254

By:

Andreou, Alexandra Zoi;
Harms, Ulf;
Klostermeier, Dagmar

Publication type:

Article

Predictive models of eukaryotic transcriptional regulation reveals changes in transcription factor roles and promoter usage between metabolic conditions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4986, doi. 10.1093/nar/gkz253

By:

Holland, Petter;
Bergenholm, David;
Börlin, Christoph S;
Liu, Guodong;
Nielsen, Jens

Publication type:

Article

Highly stable hexitol based XNA aptamers targeting the vascular endothelial growth factor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4927, doi. 10.1093/nar/gkz252

By:

Eremeeva, Elena;
Fikatas, Antonios;
Margamuljana, Lia;
Abramov, Mikhail;
Schols, Dominique;
Groaz, Elisabetta;
Herdewijn, Piet

Publication type:

Article

Discovering sequence and structure landscapes in RNA interaction motifs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4958, doi. 10.1093/nar/gkz250

By:

Adinolfi, Marta;
Pietrosanto, Marco;
Parca, Luca;
Ausiello, Gabriele;
Ferrè, Fabrizio;
Helmer-Citterich, Manuela

Publication type:

Article

unique exonuclease ExoG cleaves between RNA and DNA in mitochondrial DNA replication.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5405, doi. 10.1093/nar/gkz241

By:

Wu, Chyuan-Chuan;
Lin, Jason L J;
Yang-Yen, Hsin-Fang;
Yuan, Hanna S

Publication type:

Article

Dido3-dependent SFPQ recruitment maintains efficiency in mammalian alternative splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5381, doi. 10.1093/nar/gkz235

By:

Mora Gallardo, Carmen;
Sánchez de Diego, Ainhoa;
Gutiérrez Hernández, Julio;
Talavera-Gutiérrez, Amaia;
Fischer, Thierry;
Martínez-A, Carlos;
van Wely, Karel H M

Publication type:

Article

Sensitive effect of linker histone binding mode and subtype on chromatin condensation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4948, doi. 10.1093/nar/gkz234

By:

Perišić, Ognjen;
Portillo-Ledesma, Stephanie;
Schlick, Tamar

Publication type:

Article

N-terminal residues of human dyskerin are required for interactions with telomerase RNA that prevent RNA degradation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5368, doi. 10.1093/nar/gkz233

By:

MacNeil, Deanna E;
Lambert-Lanteigne, Patrick;
Autexier, Chantal

Publication type:

Article

Global translation inhibition yields condition-dependent de-repression of ribosome biogenesis mRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5061, doi. 10.1093/nar/gkz231

By:

Cheng, Ze;
Brar, Gloria Ann

Publication type:

Article

Optimal translational fidelity is critical for Salmonella virulence and host interactions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5356, doi. 10.1093/nar/gkz229

By:

Fan, Yongqiang;
Thompson, Laurel;
Lyu, Zhihui;
Cameron, Todd A;
De Lay, Nicholas R;
Krachler, Anne Marie;
Ling, Jiqiang

Publication type:

Article

Antagonism between BRCA2 and FIGL1 regulates homologous recombination.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5170, doi. 10.1093/nar/gkz225

By:

Kumar, Rajeev;
Duhamel, Marine;
Coutant, Eve;
Ben-Nahia, Emna;
Mercier, Raphael

Publication type:

Article

crystal structure of an antiparallel chair-type G-quadruplex formed by Bromo-substituted human telomeric DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5395, doi. 10.1093/nar/gkz221

By:

Geng, Yanyan;
Liu, Changdong;
Zhou, Bo;
Cai, Qixu;
Miao, Haitao;
Shi, Xiao;
Xu, Naining;
You, Yingying;
Fung, Chun Po;
Din, Rahman Ud;
Zhu, Guang

Publication type:

Article

Replication dynamics of individual loci in single living cells reveal changes in the degree of replication stochasticity through S phase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5155, doi. 10.1093/nar/gkz220

By:

Duriez, Bénédicte;
Chilaka, Sabarinadh;
Bercher, Jean-François;
Hercul, Eslande;
Prioleau, Marie-Noëlle

Publication type:

Article

Bacillus subtilis DisA regulates RecA-mediated DNA strand exchange.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5141, doi. 10.1093/nar/gkz219

By:

Torres, Rubén;
Carrasco, Begoña;
Gándara, Carolina;
Baidya, Amit K;
Ben-Yehuda, Sigal;
Alonso, Juan C

Publication type:

Article

Deletion of Gtpbp3 in zebrafish revealed the hypertrophic cardiomyopathy manifested by aberrant mitochondrial tRNA metabolism.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5341, doi. 10.1093/nar/gkz218

By:

Chen, Danni;
Zhang, Zengming;
Chen, Chao;
Yao, Shihao;
Yang, Qingxian;
Li, Feng;
He, Xiao;
Ai, Cheng;
Wang, Meng;
Guan, Min-Xin

Publication type:

Article

Cas4–Cas1 fusions drive efficient PAM selection and control CRISPR adaptation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5223, doi. 10.1093/nar/gkz217

By:

Almendros, Cristóbal;
Nobrega, Franklin L;
McKenzie, Rebecca E;
Brouns, Stan J J

Publication type:

Article

Setting boundaries for genome-wide heterochromatic DNA deletions through flanking inverted repeats in Tetrahymena thermophila.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5181, doi. 10.1093/nar/gkz209

By:

Lin, Chih-Yi Gabriela;
Chao, Ju-Lan;
Tsai, Huai-Kuang;
Chalker, Douglas;
Yao, Meng-Chao

Publication type:

Article

Location dependence of the transcriptional response of a potential G-quadruplex in gene promoters under oxidative stress.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5049, doi. 10.1093/nar/gkz207

By:

Fleming, Aaron M;
Zhu, Judy;
Ding, Yun;
Burrows, Cynthia J

Publication type:

Article

Cycloheximide can distort measurements of mRNA levels and translation efficiency.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4974, doi. 10.1093/nar/gkz205

By:

Santos, Daniel A;
Shi, Lei;
Tu, Benjamin P;
Weissman, Jonathan S

Publication type:

Article

Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5210, doi. 10.1093/nar/gkz202

By:

Korniy, Natalia;
Goyal, Akanksha;
Hoffmann, Markus;
Samatova, Ekaterina;
Peske, Frank;
Pöhlmann, Stefan;
Rodnina, Marina V

Publication type:

Article

PRMT1 loss sensitizes cells to PRMT5 inhibition.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5038, doi. 10.1093/nar/gkz200

By:

Gao, Guozhen;
Zhang, Liang;
Villarreal, Oscar D;
He, Wei;
Su, Dan;
Bedford, Ella;
Moh, Phoebe;
Shen, Jianjun;
Shi, Xiaobing;
Bedford, Mark T;
Xu, Han

Publication type:

Article

FOXP1 circular RNA sustains mesenchymal stem cell identity via microRNA inhibition.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5325, doi. 10.1093/nar/gkz199

By:

Cherubini, Alessandro;
Barilani, Mario;
Rossi, Riccardo L;
Jalal, Murtadhah M K;
Rusconi, Francesco;
Buono, Giuseppe;
Ragni, Enrico;
Cantarella, Giovanna;
Simpson, Hamish A R W;
Péault, Bruno;
Lazzari, Lorenza

Publication type:

Article

Chromatin regulation by Histone H4 acetylation at Lysine 16 during cell death and differentiation in the myeloid compartment.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5016, doi. 10.1093/nar/gkz195

By:

Urdinguio, Rocio G;
Lopez, Virginia;
Bayón, Gustavo F;
Diaz de la Guardia, Rafael;
Sierra, Marta I;
García-Toraño, Estela;
Perez, Raúl F;
García, María G;
Carella, Antonella;
Pruneda, Patricia C;
Prieto, Cristina;
Dmitrijeva, Marija;
Santamarina, Pablo;
Belmonte, Thalía;
Mangas, Cristina;
Diaconu, Elena;
Ferrero, Cecilia;
Tejedor, Juan Ramón;
Fernandez-Morera, Juan Luis;
Bravo, Cristina

Publication type:

Article

miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5′ terminus.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5307, doi. 10.1093/nar/gkz194

By:

Chahal, Jasmin;
Gebert, Luca F R;
Gan, Hin Hark;
Camacho, Edna;
Gunsalus, Kristin C;
MacRae, Ian J;
Sagan, Selena M

Publication type:

Article

Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5293, doi. 10.1093/nar/gkz193

By:

Pervouchine, Dmitri;
Popov, Yaroslav;
Berry, Andy;
Borsari, Beatrice;
Frankish, Adam;
Guigó, Roderic

Publication type:

Article

PRR5, 7 and 9 positively modulate TOR signaling-mediated root cell proliferation by repressing TANDEM ZINC FINGER 1 in Arabidopsis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5001, doi. 10.1093/nar/gkz191

By:

Li, Bin;
Wang, Yan;
Zhang, Yuanyuan;
Tian, Wenwen;
Chong, Kang;
Jang, Jyan-Chyun;
Wang, Lei

Publication type:

Article

5′-to-3′ strand exchange polarity is intrinsic to RecA nucleoprotein filaments in the absence of ATP hydrolysis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5126, doi. 10.1093/nar/gkz189

By:

Lin, Yu-Hsuan;
Chu, Chia-Chieh;
Fan, Hsiu-Fang;
Wang, Pang-Yen;
Cox, Michael M;
Li, Hung-Wen

Publication type:

Article

Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5114, doi. 10.1093/nar/gkz182

By:

Massip, Florian;
Laurent, Marc;
Brossas, Caroline;
Fernández-Justel, José Miguel;
Gómez, María;
Prioleau, Marie-Noelle;
Duret, Laurent;
Picard, Franck

Publication type:

Article

Direct removal of RNA polymerase barriers to replication by accessory replicative helicases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5100, doi. 10.1093/nar/gkz170

By:

Hawkins, Michelle;
Dimude, Juachi U;
Howard, Jamieson A L;
Smith, Abigail J;
Dillingham, Mark S;
Savery, Nigel J;
Rudolph, Christian J;
McGlynn, Peter

Publication type:

Article

DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e60, doi. 10.1093/nar/gkz167

By:

Li, Wenran;
Wong, Wing Hung;
Jiang, Rui

Publication type:

Article

Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e59, doi. 10.1093/nar/gkz164

By:

Hjelm, Brooke E;
Rollins, Brandi;
Morgan, Ling;
Sequeira, Adolfo;
Mamdani, Firoza;
Pereira, Filipe;
Damas, Joana;
Webb, Michelle G;
Weber, Matthieu D;
Schatzberg, Alan F;
Barchas, Jack D;
Lee, Francis S;
Akil, Huda;
Watson, Stanley J;
Myers, Richard M;
Chao, Elizabeth C;
Kimonis, Virginia;
Thompson, Peter M;
Bunney, William E;
Vawter, Marquis P

Publication type:

Article

AIControl: replacing matched control experiments with machine learning improves ChIP-seq peak identification.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e58, doi. 10.1093/nar/gkz156

By:

Hiranuma, Naozumi;
Lundberg, Scott M;
Lee, Su-In

Publication type:

Article

Autometa: automated extraction of microbial genomes from individual shotgun metagenomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e57, doi. 10.1093/nar/gkz148

By:

Miller, Ian J;
Rees, Evan R;
Ross, Jennifer;
Miller, Izaak;
Baxa, Jared;
Lopera, Juan;
Kerby, Robert L;
Rey, Federico E;
Kwan, Jason C

Publication type:

Article

Cell lineage inference from SNP and scRNA-Seq data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e56, doi. 10.1093/nar/gkz146

By:

Ding, Jun;
Lin, Chieh;
Bar-Joseph, Ziv

Publication type:

Article

Antibody-targeted chromatin enables effective intracellular delivery and functionality of CRISPR/Cas9 expression plasmids.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. e55, doi. 10.1093/nar/gkz137

By:

Killian, Tobias;
Buntz, Annette;
Herlet, Teresa;
Seul, Heike;
Mundigl, Olaf;
Längst, Gernot;
Brinkmann, Ulrich

Publication type:

Article