Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 7

Results: 47

An interplay of miRNA abundance and target site architecture determines miRNA activity and specificity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3259, doi. 10.1093/nar/gky201

By:

Brancati, Giovanna;
Großhans, Helge

Publication type:

Article

Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3813, doi. 10.1093/nar/gky213

By:

Zangari, Joséphine;
Ilie, Marius;
Rouaud, Florian;
Signetti, Laurie;
Ohanna, Mickaël;
Didier, Robin;
Roméo, Barnabé;
Goldoni, Dana;
Nottet, Nicolas;
Staedel, Cathy

Publication type:

Article

A threonyl-tRNA synthetase-like protein has tRNA aminoacylation and editing activities.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3643, doi. 10.1093/nar/gky211

By:

Chen, Yun;
Ruan, Zhi-Rong;
Wang, Yong;
Huang, Qian;
Xue, Mei-Qin;
Zhou, Xiao-Long;
Wang, En-Duo

Publication type:

Article

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3633, doi. 10.1093/nar/gky204

By:

King, Graeme A;
Hashemi Shabestari, Maryam;
Taris, Kees-Karel H;
Pandey, Ashutosh K;
Venkatesh, Sundararajan;
Thilagavathi, Jayapalraja;
Singh, Kamalendra;
Krishna Koppisetti, Rama;
Temiakov, Dmitry;
Roos, Wouter H

Publication type:

Article

ZYH005, a novel DNA intercalator, overcomes all-trans retinoic acid resistance in acute promyelocytic leukemia.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3284, doi. 10.1093/nar/gky202

By:

Tong, Qingyi;
You, Huijuan;
Chen, Xintao;
Wang, Kongchao;
Sun, Weiguang;
Pei, Yufeng;
Zhao, Xiaodan;
Yuan, Ming;
Zhu, Hucheng;
Luo, Zengwei

Publication type:

Article

Cwc23 is a component of the NTR complex and functions to stabilize Ntr1 and facilitate disassembly of spliceosome intermediates.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3764, doi. 10.1093/nar/gky052

By:

Yu-Lun Su;
Hsin-Chou Chen;
Rong-Tzong Tsai;
Pei-Chun Lin;
Soo-Chen Cheng

Publication type:

Article

The structure of the RbBP5 β-propeller domain reveals a surface with potential nucleic acid binding sites.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3802, doi. 10.1093/nar/gky199

By:

Mittal, Anshumali;
Hobor, Fruzsina;
Zhang, Ying;
Martin, Stephen R;
Gamblin, Steven J;
Ramos, Andres;
Wilson, Jon R

Publication type:

Article

N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3815, doi. 10.1093/nar/gky195

By:

Kumar, Sumith;
Karmakar, Bipul C;
Nagarajan, Deepesh;
Mukhopadhyay, Asish K;
Morgan, Richard D;
Rao, Desirazu N

Publication type:

Article

Structural basis for LeishIF4E-1 modulation by an interacting protein in the human parasite Leishmania major.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3791, doi. 10.1093/nar/gky194

By:

Meleppattu, Shimi;
Arthanari, Haribabu;
Zinoviev, Alexandra;
Boeszoermenyi, Andras;
Wagner, Gerhard;
Shapira, Michal;
Léger-Abraham, Mélissa

Publication type:

Article

A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3532, doi. 10.1093/nar/gky192

By:

Atack, John M;
Yang, Yuedong;
Seib, Kate L;
Zhou, Yaoqi;
Jennings, Michael P

Publication type:

Article

Limited reverse transcriptase activity of phi29 DNA polymerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3625, doi. 10.1093/nar/gky190

By:

Krzywkowski, Tomasz;
Kühnemund, Malte;
Wu, Di;
Nilsson, Mats

Publication type:

Article

A comprehensive catalog of predicted functional upstream open reading frames in humans.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3326, doi. 10.1093/nar/gky188

By:

McGillivray, Patrick;
Ault, Russell;
Pawashe, Mayur;
Kitchen, Robert;
Balasubramanian, Suganthi;
Gerstein, Mark

Publication type:

Article

G-quadruplexes and G-quadruplex ligands: targets and tools in antiviral therapy.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3270, doi. 10.1093/nar/gky187

By:

Ruggiero, Emanuela;
Richter, Sara N

Publication type:

Article

ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3309, doi. 10.1093/nar/gky180

By:

Nguyen, Nam-phuong D;
Deshpande, Viraj;
Luebeck, Jens;
Mischel, Paul S;
Bafna, Vineet

Publication type:

Article

Structural changes in DNA-binding proteins on complexation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3298, doi. 10.1093/nar/gky170

By:

Poddar, Sayan;
Chakravarty, Devlina;
Chakrabarti, Pinak

Publication type:

Article

A screen for deeply conserved non-coding GWAS SNPs uncovers a MIR-9-2 functional mutation associated to retinal vasculature defects in human.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3517, doi. 10.1093/nar/gky166

By:

Madelaine, Romain;
Notwell, James H;
Skariah, Gemini;
Halluin, Caroline;
Chen, Charles C;
Bejerano, Gill;
Mourrain, Philippe

Publication type:

Article

Ammonium and arsenic trioxide are potent facilitators of oligonucleotide function when delivered by gymnosis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3612, doi. 10.1093/nar/gky150

By:

Zhang, Xiaowei;
Castanotto, Daniela;
Liu, Xueli;
Shemi, Amotz;
Stein, Cy A

Publication type:

Article

HpoR, a novel c-di-GMP effective transcription factor, links the second messenger's regulatory function to the mycobacterial antioxidant defense.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3595, doi. 10.1093/nar/gky146

By:

Li, Weihui;
Li, Meng;
Hu, Lihua;
Zhu, Jingpeng;
Xie, Zhiwei;
Chen, Jiarui;
He, Zheng-Guo

Publication type:

Article

Cellular uptake mediated by epidermal growth factor receptor facilitates the intracellular activity of phosphorothioate-modified antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3579, doi. 10.1093/nar/gky145

By:

Wang, Shiyu;
Allen, Nickolas;
Vickers, Timothy A;
Revenko, Alexey S;
Sun, Hong;
Liang, Xue-hai;
Crooke, Stanley T

Publication type:

Article

Ezh2 promotes clock function and hematopoiesis independent of histone methyltransferase activity in zebrafish.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3382, doi. 10.1093/nar/gky101

By:

Zhong, Yingbin;
Ye, Qiang;
Chen, Chengyan;
Wang, Mingyong;
Wang, Han

Publication type:

Article

RNA-DNA hybrids promote the expansion of Friedreich's ataxia (GAA)n repeats via break-induced replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3487, doi. 10.1093/nar/gky099

By:

Neil, Alexander J;
Liang, Miranda U;
Khristich, Alexandra N;
Shah, Kartik A;
Mirkin, Sergei M

Publication type:

Article

Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3400, doi. 10.1093/nar/gky118

By:

Raghunathan, Nalini;
Kapshikar, Rajvardhan M;
Leela, Jakku K;
Mallikarjun, Jillella;
Bouloc, Philippe;
Gowrishankar, Jayaraman

Publication type:

Article

Genetic instability associated with loop or stem-loop structures within transcription units can be independent of nucleotide excision repair.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3498, doi. 10.1093/nar/gky110

By:

Burns, John A;
Chowdhury, Moinuddin A;
Cartularo, Laura;
Berens, Christian;
Scicchitano, David A

Publication type:

Article

The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3552, doi. 10.1093/nar/gky109

By:

Manhas, Savrina;
Ma, Lina;
Measday, Vivien

Publication type:

Article

N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3429, doi. 10.1093/nar/gky126

By:

Kumar, Sumith;
Karmakar, Bipul C;
Nagarajan, Deepesh;
Mukhopadhyay, Asish K;
Morgan, Richard D;
Rao, Desirazu N

Publication type:

Article

Combined cistrome and transcriptome analysis of SKI in AML cells identifies SKI as a co-repressor for RUNX1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3412, doi. 10.1093/nar/gky119

By:

Feld, Christine;
Sahu, Peeyush;
Frech, Miriam;
Finkernagel, Florian;
Nist, Andrea;
Stiewe, Thorsten;
Bauer, Uta-Maria;
Neubauer, Andreas

Publication type:

Article

Pold3 is required for genomic stability and telomere integrity in embryonic stem cells and meiosis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3468, doi. 10.1093/nar/gky098

By:

Zhou, Zhongcheng;
Wang, Lingling;
Ge, Feixiang;
Gong, Peng;
Wang, Hua;
Wang, Feng;
Chen, Lingyi;
Liu, Lin

Publication type:

Article

The Sm-core mediates the retention of partially-assembled spliceosomal snRNPs in Cajal bodies until their full maturation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3774, doi. 10.1093/nar/gky070

By:

Roithová, Adriana;
Klimešová, Klára;
Pánek, Josef;
Will, Cindy L;
Lührmann, Reinhard;
Staněk, David;
Girard, Cyrille

Publication type:

Article

Lineage specific transcription factors and epigenetic regulators mediate TGFβ-dependent enhancer activation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3351, doi. 10.1093/nar/gky093

By:

Fueyo, Raquel;
Iacobucci, Simona;
Pappa, Stella;
Estarás, Conchi;
Lois, Sergio;
Vicioso-Mantis, Marta;
Navarro, Claudia;
Cruz-Molina, Sara;
Reyes, José Carlos;
Rada-Iglesias, Álvaro

Publication type:

Article

Oxidative stress increases M1dG, a major peroxidation-derived DNA adduct, in mitochondrial DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3458, doi. 10.1093/nar/gky089

By:

Wauchope, Orrette R;
Mitchener, Michelle M;
Beavers, William N;
Galligan, James J;
Camarillo, Jeannie M;
Sanders, William D;
Kingsley, Philip J;
Shim, Ha-Na;
Blackwell, Thomas;
Luong, Thong

Publication type:

Article

Super-resolution imaging identifies PARP1 and the Ku complex acting as DNA double-strand break sensors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3446, doi. 10.1093/nar/gky088

By:

Yang, Guang;
Liu, Chao;
Chen, Shih-Hsun;
Kassab, Muzaffer A;
Hoff, J Damon;
Walter, Nils G;
Yu, Xiaochun

Publication type:

Article

Regulation of the positive transcriptional effect of PLZF through a non-canonical EZH2 activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3339, doi. 10.1093/nar/gky080

By:

Koubi, Myriam;
Poplineau, Mathilde;
Vernerey, Julien;
N'Guyen, Lia;
Tiberi, Guillaume;
Garciaz, Sylvain;
El-Kaoutari, Abdessamad;
Maqbool, Muhammad A;
Andrau, Jean-Christophe;
Guillouf, Christel

Publication type:

Article

An RNA-dependent mechanism for transient expression of bacterial translocation filaments.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3366, doi. 10.1093/nar/gky096

By:

Wang, Dai;
McAteer, Sean P;
Wawszczyk, Agata B;
Russell, Clark D;
Tahoun, Amin;
Elmi, Alex;
Cockroft, Scott L;
Tollervey, David;
Granneman, Sander;
Tree, Jai J

Publication type:

Article

Antibiotic resistance ABCF proteins reset the peptidyl transferase centre of the ribosome to counter translational arrest.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3753, doi. 10.1093/nar/gky050

By:

Murina, Victoriia;
Kasari, Marje;
Hauryliuk, Vasili;
Atkinson, Gemma C

Publication type:

Article

Structural analyses of NEAT1 lncRNAs suggest long-range RNA interactions that may contribute to paraspeckle architecture.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3742, doi. 10.1093/nar/gky046

By:

Lin, Yizhu;
Schmidt, Brigitte F;
Bruchez, Marcel P;
McManus, C Joel

Publication type:

Article

Dicer partner protein tunes the length of miRNAs using base-mismatch in the pre-miRNA stem.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3726, doi. 10.1093/nar/gky043

By:

Zhu, Li;
Kandasamy, Suresh K;
Fukunaga, Ryuya

Publication type:

Article

Pumilio directs deadenylation-associated translational repression of the cyclin-dependent kinase 1 activator RGC-32.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3707, doi. 10.1093/nar/gky038

By:

Brocard, Michèle;
Khasnis, Sarika;
Wood, C David;
Shannon-Lowe, Claire;
West, Michelle J

Publication type:

Article

Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3692, doi. 10.1093/nar/gky036

By:

Lackmann, Fredrik;
Belikov, Sergey;
Burlacu, Elena;
Granneman, Sander;
Wieslander, Lars

Publication type:

Article

Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3671, doi. 10.1093/nar/gky032

By:

Chuang, Trees-Juen;
Chen, Yen-Ju;
Chen, Chia-Ying;
Mai, Te-Lun;
Wang, Yi-Da;
Yeh, Chung-Shu;
Yang, Min-Yu;
Hsiao, Yu-Ting;
Chang, Tien-Hsien;
Kuo, Tzu-Chien

Publication type:

Article

Diff-seq: A high throughput sequencing-based mismatch detection assay for DNA variant enrichment and discovery.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky022

By:

Aggeli, Dimitra;
Karas, Vlad O;
Sinnott-Armstrong, Nicholas A;
Varghese, Vici;
Shafer, Robert W;
Greenleaf, William J;
Sherlock, Gavin

Publication type:

Article

A rapid fluorescent indicator displacement assay and principal component/cluster data analysis for determination of ligand-nucleic acid structural selectivity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky019

By:

del Villar-Guerra, Rafael;
Gray, Robert D;
Trent, John O;
Chaires, Jonathan B

Publication type:

Article

Highly selective retrieval of accurate DNA utilizing a pool of in situ-replicated DNA from multiple next-generation sequencing platforms.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky016

By:

Lim, Hyeonseob;
Cho, Namjin;
Ahn, Jinwoo;
Park, Sangun;
Jang, Hoon;
Kim, Hwangbeom;
Han, Hyojun;
Lee, Ji Hyun;
Bang, Duhee

Publication type:

Article

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky015

By:

Mall, Raghvendra;
Cerulo, Luigi;
Garofano, Luciano;
Frattini, Veronique;
Kunji, Khalid;
Bensmail, Halima;
Sabedot, Thais S;
Noushmehr, Houtan;
Lasorella, Anna;
Iavarone, Antonio

Publication type:

Article

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky014

By:

Jenjaroenpun, Piroon;
Wongsurawat, Thidathip;
Pereira, Rui;
Patumcharoenpol, Preecha;
Ussery, David W;
Nielsen, Jens;
Nookaew, Intawat

Publication type:

Article

Selective terminal methylation of a tRNA wobble base.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky013

By:

Masuda, Isao;
Takase, Ryuichi;
Matsubara, Ryuma;
Paulines, Mellie June;
Gamper, Howard;
Limbach, Patrick A;
Hou, Ya-Ming

Publication type:

Article

Structural divergence creates new functional features in alphavirus genomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3657, doi. 10.1093/nar/gky012

By:

Kutchko, Katrina M;
Madden, Emily A;
Morrison, Clayton;
Plante, Kenneth S;
Sanders, Wes;
Vincent, Heather A;
Cruz Cisneros, Marta C;
Long, Kristin M;
Moorman, Nathaniel J;
Heise, Mark T

Publication type:

Article

DNA as UV light-harvesting antenna.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 3543, doi. 10.1093/nar/gkx1185

By:

Volkov, Ivan L;
Reveguk, Zakhar V;
Serdobintsev, Pavel Yu;
Ramazanov, Ruslan R;
Kononov, Alexei I

Publication type:

Article