Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 6

Results: 47

The DNMT3A R882H mutant displays altered flanking sequence preferences.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3130, doi. 10.1093/nar/gky168

By:

Emperle, Max;
Rajavelu, Arumugam;
Kunert, Stefan;
Arimondo, Paola B;
Reinhardt, Richard;
Jurkowska, Renata Z;
Jeltsch, Albert

Publication type:

Article

Capturing the 'ome': the expanding molecular toolbox for RNA and DNA library construction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2701, doi. 10.1093/nar/gky167

By:

Boone, Morgane;
De Koker, Andries;
Callewaert, Nico

Publication type:

Article

Genetic and epigenetic variation in 5S ribosomal RNA genes reveals genome dynamics in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3019, doi. 10.1093/nar/gky163

By:

Simon, Lauriane;
Rabanal, Fernando A;
Dubos, Tristan;
Oliver, Cecilia;
Lauber, Damien;
Poulet, Axel;
Vogt, Alexander;
Mandlbauer, Ariane;
Le Goff, Samuel;
Sommer, Andreas

Publication type:

Article

Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3245, doi. 10.1093/nar/gky161

By:

Wu, Xiaoxian;
Haakonsen, Diane L;
Sanderlin, Allen G;
Liu, Yue J;
Shen, Liqiang;
Zhuang, Ningning;
Laub, Michael T;
Zhang, Yu

Publication type:

Article

DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2788, doi. 10.1093/nar/gky158

By:

Brandani, Giovanni B;
Niina, Toru;
Tan, Cheng;
Takada, Shoji

Publication type:

Article

Noncanonical substrate preference of lambda exonuclease for 5'-nonphosphate-ended dsDNA and a mismatch-induced acceleration effect on the enzymatic reaction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3119, doi. 10.1093/nar/gky154

By:

Wu, Tongbo;
Yang, Yufei;
Chen, Wei;
Wang, Jiayu;
Yang, Ziyu;
Wang, Shenlin;
Xiao, Xianjin;
Li, Mengyuan;
Zhao, Meiping

Publication type:

Article

Enzymatic synthesis of cyclic dinucleotide analogs by a promiscuous cyclic-AMP-GMP synthetase and analysis of cyclic dinucleotide responsive riboswitches.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2765, doi. 10.1093/nar/gky137

By:

Launer-Felty, Katherine D;
Strobel, Scott A

Publication type:

Article

Metaviz: interactive statistical and visual analysis of metagenomic data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2777, doi. 10.1093/nar/gky136

By:

Wagner, Justin;
Chelaru, Florin;
Kancherla, Jayaram;
Paulson, Joseph N;
Zhang, Alexander;
Felix, Victor;
Mahurkar, Anup;
Elmqvist, Niklas;
Corrada Bravo, Héctor

Publication type:

Article

The association between copy number aberration, DNA methylation and gene expression in tumor samples.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3009, doi. 10.1093/nar/gky131

By:

Sun, Wei;
Bunn, Paul;
Jin, Chong;
Little, Paul;
Zhabotynsky, Vasyl;
Perou, Charles M;
Hayes, David Neil;
Chen, Mengjie;
Lin, Dan-Yu

Publication type:

Article

Translational profiling of B cells infected with the Epstein-Barr virus reveals 5' leader ribosome recruitment through upstream open reading frames.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2802, doi. 10.1093/nar/gky129

By:

Bencun, Maja;
Klinke, Olaf;
Hotz-Wagenblatt, Agnes;
Klaus, Severina;
Tsai, Ming-Han;
Poirey, Remy;
Delecluse, Henri-Jacques

Publication type:

Article

Investigation of sliding DNA clamp dynamics by single-molecule fluorescence, mass spectrometry and structure-based modeling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3103, doi. 10.1093/nar/gky125

By:

Gadkari, Varun V;
Harvey, Sophie R;
Raper, Austin T;
Chu, Wen-Ting;
Wang, Jin;
Wysocki, Vicki H;
Suo, Zucai

Publication type:

Article

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3258, doi. 10.1093/nar/gky122

By:

Thormann, Verena;
Rothkegel, Maika C;
Schöpflin, Robert;
Glaser, Laura V;
Djuric, Petar;
Li, Na;
Chung, Ho-Ryun;
Schwahn, Kevin;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

i-Clamp phenoxazine for the fine tuning of DNA i-motif stabilitys.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2751, doi. 10.1093/nar/gky121

By:

Tsvetkov, Vladimir B;
Zatsepin, Timofei S;
Belyaev, Evgeny S;
Kostyukevich, Yury I;
Shpakovski, George V;
Podgorsky, Victor V;
Pozmogova, Galina E;
Varizhuk, Anna M;
Aralov, Andrey V

Publication type:

Article

Direct observation of nucleic acid binding dynamics by the telomerase essential N-terminal domain.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3088, doi. 10.1093/nar/gky117

By:

Shastry, Shankar;
Steinberg-Neifach, Olga;
Lue, Neal;
Stone, Michael D

Publication type:

Article

The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3232, doi. 10.1093/nar/gky115

By:

Tanzawa, Takehito;
Kato, Koji;
Girodat, Dylan;
Ose, Toyoyuki;
Kumakura, Yuki;
Wieden, Hans-Joachim;
Uchiumi, Toshio;
Tanaka, Isao;
Yao, Min

Publication type:

Article

eIF4A alleviates the translational repression mediated by classical secondary structures more than by G-quadruplexes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3075, doi. 10.1093/nar/gky108

By:

Waldron, Joseph A;
Raza, Farheen;
Le Quesne, John

Publication type:

Article

Di-copper metallodrugs promote NCI-60 chemotherapy via singlet oxygen and superoxide production with tandem TA/TA and AT/AT oligonucleotide discrimination.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gky105

By:

Slator, Creina;
Molphy, Zara;
McKee, Vickie;
Long, Conor;
Brown, Tom;
Kellett, Andrew

Publication type:

Article

Structural and mechanistic insights into UHRF1-mediated DNMT1 activation in the maintenance DNA methylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3218, doi. 10.1093/nar/gky104

By:

Li, Tao;
Wang, Linsheng;
Du, Yongming;
Xie, Si;
Yang, Xi;
Lian, Fuming;
Zhou, Zhongjun;
Qian, Chengmin

Publication type:

Article

Arginine methylation of the C-terminus RGG motif promotes TOP3B topoisomerase activity and stress granule localization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3061, doi. 10.1093/nar/gky103

By:

Huang, Lifeng;
Wang, Zhihao;
Narayanan, Nithya;
Yang, Yanzhong

Publication type:

Article

Ksp1-dependent phosphorylation of eIF4G modulates post-transcriptional regulation of specific mRNAs under glucose deprivation conditions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3047, doi. 10.1093/nar/gky097

By:

Chang, Yeonji;
Huh, Won-Ki

Publication type:

Article

Structural rearrangements in the mitochondrial genome of Drosophila melanogaster induced by elevated levels of the replicative DNA helicase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3034, doi. 10.1093/nar/gky094

By:

Ciesielski, Grzegorz L;
Nadalutti, Cristina A;
Oliveira, Marcos T;
Jacobs, Howard T;
Griffith, Jack D;
Kaguni, Laurie S

Publication type:

Article

Structurally distinct Mre11 domains mediate MRX functions in resection, end-tethering and DNA damage resistance.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2990, doi. 10.1093/nar/gky086

By:

Cassani, Corinne;
Gobbini, Elisa;
Vertemara, Jacopo;
Wang, Weibin;
Marsella, Antonio;
Sung, Patrick;
Tisi, Renata;
Zampella, Giuseppe;
Longhese, Maria Pia

Publication type:

Article

Nuclear import of Cdc13 limits chromosomal capping.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2975, doi. 10.1093/nar/gky085

By:

Mersaoui, Sofiane Y;
Bonnell, Erin;
Wellinger, Raymund J

Publication type:

Article

Characterization of clinically used oral antiseptics as quadruplex-binding ligands.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2722, doi. 10.1093/nar/gky084

By:

Calabrese, David R;
Zlotkowski, Katherine;
Alden, Stephanie;
Hewitt, William M;
Connelly, Colleen M;
Wilson, Robert M;
Gaikwad, Snehal;
Chen, Lu;
Guha, Rajarshi;
Thomas, Craig J

Publication type:

Article

Missed cleavage opportunities by FEN1 lead to Okazaki fragment maturation via the long-flap pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2956, doi. 10.1093/nar/gky082

By:

Zaher, Manal S;
Rashid, Fahad;
Song, Bo;
Joudeh, Luay I;
Sobhy, Mohamed A;
Tehseen, Muhammad;
Hingorani, Manju M;
Hamdan, Samir M

Publication type:

Article

The structure of an elongation factor G-ribosome complex captured in the absence of inhibitors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3211, doi. 10.1093/nar/gky081

By:

Macé, Kevin;
Giudice, Emmanuel;
Chat, Sophie;
Gillet, Reynald

Publication type:

Article

Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2918, doi. 10.1093/nar/gky079

By:

Nikolic, Nela;
Bergmiller, Tobias;
Vandervelde, Alexandra;
Albanese, Tanino G;
Gelens, Lendert;
Moll, Isabella

Publication type:

Article

DNA mismatch repair and oligonucleotide end-protection promote base-pair substitution distal from a CRISPR/Cas9-induced DNA break.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2945, doi. 10.1093/nar/gky076

By:

Harmsen, Tim;
Klaasen, Sjoerd;
van de Vrugt, Henri;
te Riele, Hein

Publication type:

Article

Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2901, doi. 10.1093/nar/gky069

By:

Kim, Donghyuk;
Seo, Sang Woo;
Gao, Ye;
Nam, Hojung;
Guzman, Gabriela I;
Cho, Byung-Kwan;
Palsson, Bernhard O

Publication type:

Article

Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2883, doi. 10.1093/nar/gky063

By:

Li, Jia;
Wu, Xinwei;
Zhou, Yubin;
Lee, Minjung;
Guo, Lei;
Han, Wei;
Mo, William;
Cao, Wen-ming;
Sun, Deqiang;
Xie, Ruiyu

Publication type:

Article

Replication stress induces accumulation of FANCD2 at central region of large fragile genes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2932, doi. 10.1093/nar/gky058

By:

Okamoto, Yusuke;
Iwasaki, Watal M;
Kugou, Kazuto;
Takahashi, Kazuki K;
Oda, Arisa;
Sato, Koichi;
Kobayashi, Wataru;
Kawai, Hidehiko;
Sakasai, Ryo;
Takaori-Kondo, Akifumi

Publication type:

Article

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2868, doi. 10.1093/nar/gky051

By:

Thormann, Verena;
Rothkegel, Maika C;
Schöpflin, Robert;
Glaser, Laura V;
Djuric, Petar;
Li, Na;
Chung, Ho-Ryun;
Schwahn, Kevin;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

A context-specific cardiac β-catenin and GATA4 interaction influences TCF7L2 occupancy and remodels chromatin driving disease progression in the adult heart.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2850, doi. 10.1093/nar/gky049

By:

Iyer, Lavanya M;
Nagarajan, Sankari;
Woelfer, Monique;
Schoger, Eric;
Khadjeh, Sara;
Zafiriou, Maria Patapia;
Kari, Vijayalakshmi;
Herting, Jonas;
Pang, Sze Ting;
Weber, Tobias

Publication type:

Article

Viral suppressors of RNAi employ a rapid screening mode to discriminate viral RNA from cellular small RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3257, doi. 10.1093/nar/gky042

By:

Fareh, Mohamed;
van Lopik, Jasper;
Katechis, Iason;
Bronkhorst, Alfred W;
Haagsma, Anna C;
van Rij, Ronald P;
Joo, Chirlmin

Publication type:

Article

Cell-cycle regulation of non-enzymatic functions of the Drosophila methyltransferase PR-Set7.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2834, doi. 10.1093/nar/gky034

By:

Zouaz, Amel;
Fernando, Céline;
Perez, Yannick;
Sardet, Claude;
Julien, Eric;
Grimaud, Charlotte

Publication type:

Article

TelAP1 links telomere complexes with developmental expression site silencing in African trypanosomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 2820, doi. 10.1093/nar/gky028

By:

Reis, Helena;
Schwebs, Marie;
Dietz, Sabrina;
Janzen, Christian J;
Butter, Falk

Publication type:

Article

dropClust: efficient clustering of ultra-large scRNA-seq data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gky007

By:

Sinha, Debajyoti;
Kumar, Akhilesh;
Kumar, Himanshu;
Bandyopadhyay, Sanghamitra;
Sengupta, Debarka

Publication type:

Article

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1321

By:

Krawczyk, Pawel S;
Lipinski, Leszek;
Dziembowski, Andrzej

Publication type:

Article

Cold-inducible RNA-binding protein (CIRP) induces translation of the cell-cycle inhibitor p27<sup>Kip1</sup>.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3198, doi. 10.1093/nar/gkx1317

By:

Roilo, Martina;
Kullmann, Michael K;
Hengst, Ludger

Publication type:

Article

Viral suppressors of RNAi employ a rapid screening mode to discriminate viral RNA from cellular small RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3187, doi. 10.1093/nar/gkx1316

By:

Fareh, Mohamed;
van Lopik, Jasper;
Katechis, Iason;
Bronkhorst, Alfred W;
Haagsma, Anna C;
van Rij, Ronald P;
Joo, Chirlmin

Publication type:

Article

Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1314

By:

Noh, Heeju;
Shoemaker, Jason E;
Gunawan, Rudiyanto

Publication type:

Article

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1313

By:

Azad, Ariful;
Pavlopoulos, Georgios A;
Ouzounis, Christos A;
Kyrpides, Nikos C;
Buluç, Aydin

Publication type:

Article

Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3169, doi. 10.1093/nar/gkx1307

By:

Shah, Neelam;
Beckham, Simone A;
Wilce, Jacqueline A;
Wilce, Matthew C J

Publication type:

Article

An engineered RNA binding protein with improved splicing regulation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3152, doi. 10.1093/nar/gkx1304

By:

Hale, Melissa A;
Richardson, Jared I;
Day, Ryan C;
McConnell, Ona L;
Arboleda, Juan;
Wang, Eric T;
Berglund, J Andrew

Publication type:

Article

Viewing pre-60S amaturation at a minute's timescale.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 3140, doi. 10.1093/nar/gkx1293

By:

Zisser, Gertrude;
Ohmayer, Uli;
Mauerhofer, Christina;
Mitterer, Valentin;
Klein, Isabella;
Rechberger, Gerald N;
Wolinski, Heimo;
Prattes, Michael;
Pertschy, Brigitte;
Milkereit, Philipp

Publication type:

Article

XPAT: a toolkit to conduct cross-platform association studies with heterogeneous sequencing datasets.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1280

By:

Yu, Yao;
Hu, Hao;
Bohlender, Ryan J;
Hu, Fulan;
Chen, Jiun-Sheng;
Holt, Carson;
Fowler, Jerry;
Guthery, Stephen L;
Scheet, Paul;
Hildebrandt, Michelle A T

Publication type:

Article

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1279

By:

Kulkarni, Shubhada R;
Vaneechoutte, Dries;
Van de Velde, Jan;
Vandepoele, Klaas

Publication type:

Article