Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 5

Results: 51

Unique tRNA gene profile suggests paucity of nucleotide modifications in anticodons of a deep-sea symbiotic Spiroplasma.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2197, doi. 10.1093/nar/gky045

By:

Yong Wang;
Fang-Chao Zhu;
Li-Sheng He;
Danchin, Antoine

Publication type:

Article

Single-molecule localization microscopy reveals molecular transactions during RAD51 filament assembly at cellular DNA damage sites.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2398, doi. 10.1093/nar/gkx1303

By:

Haas, Kalina T;
Lee, MiYoung;
Esposito, Alessandro;
Venkitaraman, Ashok R

Publication type:

Article

Structural and functional adaptation of Haloferax volcanii TFEα/β.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2308, doi. 10.1093/nar/gkx1302

By:

Blombach, Fabian;
Ausiannikava, Darya;
Figueiredo, Angelo Miguel;
Soloviev, Zoja;
Prentice, Tanya;
Zhang, Mark;
Zhou, Nanruoyi;
Thalassinos, Konstantinos;
Allers, Thorsten;
Werner, Finn

Publication type:

Article

A fungal Argonaute interferes with RNA interference.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2495, doi. 10.1093/nar/gkx1301

By:

Nguyen, Quyet;
Iritani, Akihide;
Ohkita, Shuhei;
Vu, Ba V;
Yokoya, Kana;
Matsubara, Ai;
Ikeda, Ken-ichi;
Suzuki, Nobuhiro;
Nakayashiki, Hitoshi

Publication type:

Article

Phosphorylation of an intrinsically disordered region of Ets1 shifts a multi-modal interaction ensemble to an auto-inhibitory state.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2243, doi. 10.1093/nar/gkx1297

By:

Kasahara, Kota;
Shiina, Masaaki;
Higo, Junichi;
Ogata, Kazuhiro;
Nakamura, Haruki

Publication type:

Article

The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2560, doi. 10.1093/nar/gky107

By:

Toliusis, Paulius;
Tamulaitiene, Giedre;
Grigaitis, Rokas;
Tuminauskaite, Donata;
Silanskas, Arunas;
Manakova, Elena;
Venclovas, Česlovas;
Szczelkun, Mark D;
Siksnys, Virginijus;
Zaremba, Mindaugas

Publication type:

Article

ExoCET: exonuclease in vitro assembly combined with RecET recombination for highly efficient direct DNA cloning from complex genomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2697, doi. 10.1093/nar/gkx1296

By:

Wang, Hailong;
Li, Zhen;
Jia, Ruonan;
Yin, Jia;
Li, Aiying;
Xia, Liqiu;
Yin, Yulong;
Müller, Rolf;
Fu, Jun;
Stewart, A Francis

Publication type:

Article

Splicing regulation by long noncoding RNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2169, doi. 10.1093/nar/gky095

By:

Romero-Barrios, Natali;
Legascue, Maria Florencia;
Benhamed, Moussa;
Ariel, Federico;
Crespi, Martin

Publication type:

Article

Protein-mediated looping of DNA under tension requires supercoiling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2370, doi. 10.1093/nar/gky021

By:

Yan, Yan;
Leng, Fenfei;
Finzi, Laura;
Dunlap, David

Publication type:

Article

Corrigendum: UniProt: the universal protein knowledgebase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2699, doi. 10.1093/nar/gky092

By:

UniProt Consortium, The

Publication type:

Article

Erratum: The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2700, doi. 10.1093/nar/gky091

By:

Zhao, Dongyan;
Hamilton, John P;
Vaillancourt, Brieanne;
Zhang, Wenli;
Eizenga, Georgia C;
Cui, Yuehua;
Jiang, Jiming;
Buell, C Robin;
Jiang, Ning

Publication type:

Article

Corrigendum: A fungal Argonaute interferes with RNA interference.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2698, doi. 10.1093/nar/gky078

By:

Nguyen, Quyet;
Iritani, Akihide;
Ohkita, Shuhei;
Vu, Ba V;
Yokoya, Kana;
Matsubara, Ai;
Ikeda, Ken-ichi;
Suzuki, Nobuhiro;
Nakayashiki, Hitoshi

Publication type:

Article

APE2 promotes DNA damage response pathway from a single-strand break.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2479, doi. 10.1093/nar/gky020

By:

Lin, Yunfeng;
Bai, Liping;
Cupello, Steven;
Hossain, Md Akram;
Deem, Bradley;
McLeod, Melissa;
Raj, Jude;
Yan, Shan

Publication type:

Article

Brain-specific deletion of histone variant H2A.z results in cortical neurogenesis defects and neurodevelopmental disorder.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2290, doi. 10.1093/nar/gkx1295

By:

Shen, Tianjin;
Ji, Fen;
Wang, Yuanyuan;
Lei, Xuepei;
Zhang, Dongming;
Jiao, Jianwei

Publication type:

Article

Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2265, doi. 10.1093/nar/gky075

By:

Xu, Minli;
Lawrence, Jeffrey G;
Durand, Dannie

Publication type:

Article

Coupling the core of the anticancer drug etoposide to an oligonucleotide induces topoisomerase II-mediated cleavage at specific DNA sequences.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2218, doi. 10.1093/nar/gky072

By:

Infante Lara, Lorena;
Fenner, Sabine;
Ratcliffe, Steven;
Isidro-Llobet, Albert;
Hann, Michael;
Bax, Ben;
Osheroff, Neil

Publication type:

Article

Affinity maturation of a portable Fab–RNA module for chaperone-assisted RNA crystallography.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2624, doi. 10.1093/nar/gkx1292

By:

Koirala, Deepak;
Shelke, Sandip A;
Dupont, Marcel;
Ruiz, Stormy;
DasGupta, Saurja;
Bailey, Lucas J;
Benner, Steven A;
Piccirilli, Joseph A

Publication type:

Article

RNA-binding specificity landscapes of designer pentatricopeptide repeat proteins elucidate principles of PPR–RNA interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2613, doi. 10.1093/nar/gkx1288

By:

Miranda, Rafael G;
McDermott, James J;
Barkan, Alice

Publication type:

Article

Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2585, doi. 10.1093/nar/gkx1286

By:

Azam, Muhammad S;
Vanderpool, Carin K

Publication type:

Article

WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2356, doi. 10.1093/nar/gky017

By:

Cheng, Saifeng;
Tan, Feng;
Lu, Yue;
Liu, Xiaoyun;
Li, Tiantian;
Yuan, Wenjia;
Zhao, Yu;
Zhou, Dao-Xiu

Publication type:

Article

Contrasting silencing mechanisms of the same target mRNA by two regulatory RNAs in Escherichia coli.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2600, doi. 10.1093/nar/gkx1287

By:

Lalaouna, David;
Prévost, Karine;
Laliberté, Guillaume;
Houé, Vincent;
Massé, Eric

Publication type:

Article

The hepatitis C viral nonstructural protein 5A stabilizes growth-regulatory human transcripts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2537, doi. 10.1093/nar/gky061

By:

Guo, Liang;
Sharma, Suresh D;
Debes, Jose;
Beisang, Daniel;
Rattenbacher, Bernd;
Louis, Irina Vlasova-St;
Wiesner, Darin L;
Cameron, Craig E;
Bohjanen, Paul R

Publication type:

Article

Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2252, doi. 10.1093/nar/gky009

By:

Jost, Daniel;
Vaillant, Cédric

Publication type:

Article

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2159, doi. 10.1093/nar/gky066

By:

Ardui, Simon;
Ameur, Adam;
Vermeesch, Joris R;
Hestand, Matthew S

Publication type:

Article

Acute hepatotoxicity of 2′ fluoro-modified 5–10–5 gapmer phosphorothioate oligonucleotides in mice correlates with intracellular protein binding and the loss of DBHS proteins.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2204, doi. 10.1093/nar/gky060

By:

Shen, Wen;
De Hoyos, Cheryl L;
Sun, Hong;
Vickers, Timothy A;
Liang, Xue-hai;
Crooke, Stanley T

Publication type:

Article

The prolyl isomerase FKBP25 regulates microtubule polymerization impacting cell cycle progression and genomic stability.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2459, doi. 10.1093/nar/gky008

By:

Dilworth, David;
Gudavicius, Geoff;
Xu, Xiaoxue;
Boyce, Andrew K J;
O'Sullivan, Connor;
Serpa, Jason J;
Bilenky, Misha;
Petrochenko, Evgeniy V;
Borchers, Christoph H;
Hirst, Martin

Publication type:

Article

The mechanisms of a mammalian splicing enhancer.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2145, doi. 10.1093/nar/gky056

By:

Jobbins, Andrew M;
Reichenbach, Linus F;
Lucas, Christian M;
Hudson, Andrew J;
Burley, Glenn A;
Eperon, Ian C

Publication type:

Article

Structure of a human cap-dependent 48S translation pre-initiation complex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2678, doi. 10.1093/nar/gky054

By:

Eliseev, Boris;
Yeramala, Lahari;
Leitner, Alexander;
Karuppasamy, Manikandan;
Raimondeau, Etienne;
Huard, Karine;
Alkalaeva, Elena;
Aebersold, Ruedi;
Schaffitzel, Christiane

Publication type:

Article

Structural characterization of the Asf1–Rtt109 interaction and its role in histone acetylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2279, doi. 10.1093/nar/gkx1283

By:

Lercher, Lukas;
Danilenko, Nataliya;
Kirkpatrick, John;
Carlomagno, Teresa

Publication type:

Article

Epigenetic features of human telomeres.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2347, doi. 10.1093/nar/gky006

By:

Cubiles, María D;
Barroso, Sonia;
Vaquero-Sedas, María I;
Enguix, Alicia;
Aguilera, Andrés;
Vega-Palas, Miguel A

Publication type:

Article

RecA requires two molecules of Mg<sup>2+</sup> ions for its optimal strand exchange activity in vitro.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2548, doi. 10.1093/nar/gky048

By:

Kim, Raeyeong;
Kanamaru, Shuji;
Mikawa, Tsutomu;
Prévost, Chantal;
Ishii, Kentaro;
Ito, Kentaro;
Uchiyama, Susumu;
Oda, Masayuki;
Iwasaki, Hiroshi;
Kim, Seog K

Publication type:

Article

Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2573, doi. 10.1093/nar/gkx1273

By:

Watters, Kyle E;
Choudhary, Krishna;
Aviran, Sharon;
Lucks, Julius B;
Perry, Keith L;
Thompson, Jeremy R

Publication type:

Article

A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2521, doi. 10.1093/nar/gky005

By:

Wang, Jiao;
Liu, Yingchun;
Liu, Ying;
Du, Kaixin;
Xu, Shuqi;
Wang, Yuchen;
Krupovic, Mart;
Chen, Xiangdong

Publication type:

Article

Bacterial gene control by DNA looping using engineered dimeric transcription activator like effector (TALE) proteins.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2690, doi. 10.1093/nar/gky047

By:

Becker, Nicole A;
Schwab, Tanya L;
Clark, Karl J;
Maher, L. James

Publication type:

Article

Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2660, doi. 10.1093/nar/gky044

By:

Morellet, Nelly;
Li, Xianghong;
Wieninger, Silke A;
Taylor, Jennifer L;
Bischerour, Julien;
Moriau, Séverine;
Lescop, Ewen;
Bardiaux, Benjamin;
Mathy, Nathalie;
Assrir, Nadine

Publication type:

Article

Single-particle trajectories reveal two-state diffusion-kinetics of hOGG1 proteins on DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2446, doi. 10.1093/nar/gky004

By:

Vestergaard, Christian L;
Blainey, Paul C;
Flyvbjerg, Henrik

Publication type:

Article

THiCweed: fast, sensitive detection of sequence features by clustering big datasets.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 1, doi. 10.1093/nar/gkx1251

By:

Agrawal, Ankit;
Sambare, Snehal V;
Narlikar, Leelavati;
Siddharthan, Rahul

Publication type:

Article

DNA-binding landscape of IRF3, IRF5 and IRF7 dimers: implications for dimer-specific gene regulation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2509, doi. 10.1093/nar/gky002

By:

Andrilenas, Kellen K;
Ramlall, Vijendra;
Kurland, Jesse;
Leung, Brandon;
Harbaugh, Allen G;
Siggers, Trevor

Publication type:

Article

The cohesion establishment factor Esco1 acetylates α-tubulin to ensure proper spindle assembly in oocyte meiosis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2335, doi. 10.1093/nar/gky001

By:

Lu, Yajuan;
Li, Sen;
Cui, Zhaokang;
Dai, Xiaoxin;
Zhang, Mianqun;
Miao, Yilong;
Zhou, Changyin;
Ou, Xianghong;
Xiong, Bo

Publication type:

Article

A conserved structural element in the RNA helicase UPF1 regulates its catalytic activity in an isoform-specific manner.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2648, doi. 10.1093/nar/gky040

By:

Gowravaram, Manjeera;
Bonneau, Fabien;
Kanaan, Joanne;
Maciej, Vincent D;
Fiorini, Francesca;
Raj, Saurabh;
Croquette, Vincent;
Le Hir, Hervé;
Chakrabarti, Sutapa

Publication type:

Article

RAD51 and RTEL1 compensate telomere loss in the absence of telomerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2432, doi. 10.1093/nar/gkx1322

By:

Olivier, Margaux;
Charbonnel, Cyril;
Amiard, Simon;
White, Charles I;
Gallego, Maria E

Publication type:

Article

Comparison of partially and fully chemically-modified siRNA in conjugate-mediated delivery in vivo.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2185, doi. 10.1093/nar/gky037

By:

Hassler, Matthew R;
Turanov, Anton A;
Alterman, Julia F;
Haraszti, Reka A;
Coles, Andrew H;
Osborn, Maire F;
Echeverria, Dimas;
Nikan, Mehran;
Salomon, William E;
Roux, Loïc

Publication type:

Article

Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2636, doi. 10.1093/nar/gky033

By:

Azad, Robert N;
Zafiropoulos, Dana;
Ober, Douglas;
Jiang, Yining;
Chiu, Tsu-Pei;
Sagendorf, Jared M;
Rohs, Remo;
Tullius, Thomas D

Publication type:

Article

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: new insights into DNA ADP-ribosylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2417, doi. 10.1093/nar/gkx1318

By:

Zarkovic, Gabriella;
Belousova, Ekaterina A;
Talhaoui, Ibtissam;
Saint-Pierre, Christine;
Kutuzov, Mikhail M;
Matkarimov, Bakhyt T;
Biard, Denis;
Gasparutto, Didier;
Lavrik, Olga I;
Ishchenko, Alexander A

Publication type:

Article

ExoCET: exonuclease in vitro assembly combined with RecET recombination for highly efficient direct DNA cloning from complex genomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 1, doi. 10.1093/nar/gkx1249

By:

Wang, Hailong;
Li, Zhen;
Jia, Ruonan;
Yin, Jia;
Li, Aiying;
Xia, Liqiu;
Yin, Yulong;
Müller, Rolf;
Fu, Jun;
Stewart, A Francis

Publication type:

Article

The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2380, doi. 10.1093/nar/gky025

By:

Zhao, Dongyan;
Hamilton, John P;
Vaillancourt, Brieanne;
Zhang, Wenli;
Eizenga, Georgia C;
Cui, Yuehua;
Jiang, Jiming;
Buell, C Robin;
Jiang, Ning

Publication type:

Article

TAD-free analysis of architectural proteins and insulators.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 1, doi. 10.1093/nar/gkx1246

By:

Mourad, Raphaël;
Cuvier, Olivier

Publication type:

Article

The elongation factor Spn1 is a multi-functional chromatin binding protein.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2321, doi. 10.1093/nar/gkx1305

By:

Li, Sha;
Almeida, Adam R;
Radebaugh, Catherine A;
Zhang, Ling;
Chen, Xu;
Huang, Liangqun;
Thurston, Alison K;
Kalashnikova, Anna A;
Hansen, Jeffrey C;
Luger, Karolin

Publication type:

Article

CRISPR/Cas9-mediated modulation of splicing efficiency reveals short splicing isoform of Xist RNA is sufficient to induce X-chromosome inactivation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 1, doi. 10.1093/nar/gkx1227

By:

Yue, Minghui;
Ogawa, Yuya

Publication type:

Article

Multimode drug inducible CRISPR/Cas9 devices for transcriptional activation and genome editing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 1, doi. 10.1093/nar/gkx1222

By:

Lu, Jia;
Zhao, Chen;
Zhao, Yingze;
Zhang, Jingfang;
Zhang, Yue;
Chen, Li;
Han, Qiyuan;
Ying, Yue;
Peng, Shuai;
Ai, Runna

Publication type:

Article