Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 22

Results: 49

Unusual dicistronic expression from closely spaced initiation codons in an umbravirus subgenomic RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11726, doi. 10.1093/nar/gky871

By:

Gao, Feng;
Alekhina, Olga M;
Vassilenko, Konstantin S;
Simon, Anne E

Publication type:

Article

Topokaryotyping demonstrates single cell variability and stress dependent variations in nuclear envelope associated domains.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e135, doi. 10.1093/nar/gky818

By:

Jurisic, Anamarija;
Robin, Chloé;
Tarlykov, Pavel;
Siggens, Lee;
Schoell, Brigitte;
Jauch, Anna;
Ekwall, Karl;
Sørensen, Claus Storgaard;
Lipinski, Marc;
Shoaib, Muhammad;
Ogryzko, Vasily

Publication type:

Article

Tethered imidazole mediated duplex stabilization and its potential for aptamer stabilization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11671, doi. 10.1093/nar/gky1062

By:

Verdonck, Lars;
Buyst, Dieter;
de Vries, Anne-Mare;
Gheerardijn, Vicky;
Madder, Annemieke;
Martins, José C

Publication type:

Article

Terminal hairpin in oligonucleotide dominantly prioritizes intramolecular cyclization by T4 ligase over intermolecular polymerization: an exclusive methodology for producing ssDNA rings.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e132, doi. 10.1093/nar/gky769

By:

Cui, Yixiao;
Han, Xutiange;
An, Ran;
Zhang, Yaping;
Cheng, Kai;
Liang, Xingguo;
Komiyama, Makoto

Publication type:

Article

Structure of human telomere G-quadruplex in the presence of a model drug along the thermal unfolding pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11927, doi. 10.1093/nar/gky1092

By:

Bianchi, Federico;
Comez, Lucia;
Biehl, Ralf;
D'Amico, Francesco;
Gessini, Alessandro;
Longo, Marialucia;
Masciovecchio, Claudio;
Petrillo, Caterina;
Radulescu, Aurel;
Rossi, Barbara;
Sacchetti, Francesco;
Sebastiani, Federico;
Violini, Nicolò;
Paciaroni, Alessandro

Publication type:

Article

Structural insights into the duplex DNA processing of TREX2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12166, doi. 10.1093/nar/gky970

By:

Cheng, Hiu-Lo;
Lin, Chun-Ting;
Huang, Kuan-Wei;
Wang, Shuying;
Lin, Yeh-Tung;
Toh, Shu-Ing;
Hsiao, Yu-Yuan

Publication type:

Article

Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11776, doi. 10.1093/nar/gky926

By:

Park, Suk-Youl;
Kim, Gwang Sik;
Hwang, Hyo-Jeong;
Nam, Taek-Hyun;
Park, Hee-Sae;
Song, Jaeyoung;
Jang, Tae-Ho;
Lee, Young Chul;
Kim, Jeong-Sun

Publication type:

Article

The structural basis of CstF-77 modulation of cleavage and polyadenylation through stimulation of CstF-64 activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12022, doi. 10.1093/nar/gky862

By:

Grozdanov, Petar N;
Masoumzadeh, Elahe;
Latham, Michael P;
MacDonald, Clinton C

Publication type:

Article

Structural basis for receptor-regulated SMAD recognition by MAN1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12139, doi. 10.1093/nar/gky925

By:

Miyazono, Ken-ichi;
Ohno, Yosuke;
Wada, Hikaru;
Ito, Tomoko;
Fukatsu, Yui;
Kurisaki, Akira;
Asashima, Makoto;
Tanokura, Masaru

Publication type:

Article

Structural basis for recognition and repair of the 3′-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11980, doi. 10.1093/nar/gky934

By:

Silhan, Jan;
Zhao, Qiyuan;
Boura, Evzen;
Thomson, Hellen;
Förster, Andreas;
Tang, Christoph M;
Freemont, Paul S;
Baldwin, Geoff S

Publication type:

Article

Structural basis for DNA break recognition by ARTD2/PARP2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12154, doi. 10.1093/nar/gky927

By:

Obaji, Ezeogo;
Haikarainen, Teemu;
Lehtiö, Lari

Publication type:

Article

Stability of RNA duplexes containing inosine·cytosine pairs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12099, doi. 10.1093/nar/gky907

By:

Wright, Daniel J;
Force, Christopher R;
Znosko, Brent M

Publication type:

Article

Site specific target binding controls RNA cleavage efficiency by the Kaposi's sarcoma-associated herpesvirus endonuclease SOX.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11968, doi. 10.1093/nar/gky932

By:

Mendez, Aaron S;
Vogt, Carolin;
Bohne, Jens;
Glaunsinger, Britt A

Publication type:

Article

Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 on the mitochondrial genome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11659, doi. 10.1093/nar/gky1104

By:

Koh, Casslynn W Q;
Goh, Yeek Teck;
Toh, Joel D W;
Neo, Suat Peng;
Ng, Sarah B;
Gunaratne, Jayantha;
Gao, Yong-Gui;
Quake, Stephen R;
Burkholder, William F;
Goh, Wee Siong S

Publication type:

Article

Several structural motifs cooperate in determining the highly effective anti-thrombin activity of NU172 aptamer.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12177, doi. 10.1093/nar/gky990

By:

Troisi, Romualdo;
Napolitano, Valeria;
Spiridonova, Vera;
Russo Krauss, Irene;
Sica, Filomena

Publication type:

Article

Salicylic acid-induced transcriptional reprogramming by the HAC–NPR1–TGA histone acetyltransferase complex in Arabidopsis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11712, doi. 10.1093/nar/gky847

By:

Jin, Hongshi;
Choi, Sun-Mee;
Kang, Min-Jeong;
Yun, Se-Hun;
Kwon, Dong-Jin;
Noh, Yoo-Sun;
Noh, Bosl

Publication type:

Article

RNA-binding protein DDX1 is responsible for fatty acid-mediated repression of insulin translation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12052, doi. 10.1093/nar/gky867

By:

Li, Zonghong;
Zhou, Maoge;
Cai, Zhaokui;
Liu, Hongyang;
Zhong, Wen;
Hao, Qiang;
Cheng, Dongwan;
Hu, Xihao;
Hou, Junjie;
Xu, Pingyong;
Xue, Yuanchao;
Zhou, Yifa;
Xu, Tao

Publication type:

Article

Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12067, doi. 10.1093/nar/gky873

By:

Avolio, Rosario;
Järvelin, Aino I;
Mohammed, Shabaz;
Agliarulo, Ilenia;
Condelli, Valentina;
Zoppoli, Pietro;
Calice, Giovanni;
Sarnataro, Daniela;
Bechara, Elias;
Tartaglia, Gian G;
Landriscina, Matteo;
Castello, Alfredo;
Esposito, Franca;
Matassa, Danilo S

Publication type:

Article

Power, false discovery rate and Winner's Curse in eQTL studies.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e133, doi. 10.1093/nar/gky780

By:

Huang, Qin Qin;
Ritchie, Scott C;
Brozynska, Marta;
Inouye, Michael

Publication type:

Article

Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11847, doi. 10.1093/nar/gky1065

By:

Dahan, Danielle;
Tsirkas, Ioannis;
Dovrat, Daniel;
Sparks, Melanie A;
Singh, Saurabh P;
Galletto, Roberto;
Aharoni, Amir

Publication type:

Article

Novel regulatory mechanism of establishment genes of conjugative plasmids.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11910, doi. 10.1093/nar/gky996

By:

Val-Calvo, Jorge;
Luque-Ortega, Juan R;
Crespo, Isidro;
Miguel-Arribas, Andrés;
Abia, David;
Sánchez-Hevia, Dione L;
Serrano, Ester;
Gago-Córdoba, César;
Ares, Saúl;
Alfonso, Carlos;
Rojo, Fernando;
Wu, Ling J;
Boer, D Roeland;
Meijer, Wilfried J J

Publication type:

Article

Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11869, doi. 10.1093/nar/gky1107

By:

Bonath, Franziska;
Domingo-Prim, Judit;
Tarbier, Marcel;
Friedländer, Marc R;
Visa, Neus

Publication type:

Article

The neurodegenerative diseases ALS and SMA are linked at the molecular level via the ASC-1 complex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11939, doi. 10.1093/nar/gky1093

By:

Chi, Binkai;
O'Connell, Jeremy D;
Iocolano, Alexander D;
Coady, Jordan A;
Yu, Yong;
Gangopadhyay, Jaya;
Gygi, Steven P;
Reed, Robin

Publication type:

Article

Multiple RNA–RNA tertiary interactions are dispensable for formation of a functional U2/U6 RNA catalytic core in the spliceosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12126, doi. 10.1093/nar/gky966

By:

Bao, Penghui;
Boon, Kum-Loong;
Will, Cindy L;
Hartmuth, Klaus;
Lührmann, Reinhard

Publication type:

Article

Loose ends: almost one in five human genes still have unresolved coding status.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12194, doi. 10.1093/nar/gky1146

By:

Abascal, Federico;
Juan, David;
Jungreis, Irwin;
Kellis, Manolis;
Martinez, Laura;
Rigau, Maria;
Rodriguez, Jose Manuel;
Vazquez, Jesus;
Tress, Michael L

Publication type:

Article

Long non-coding RNA ChRO1 facilitates ATRX/DAXX-dependent H3.3 deposition for transcription-associated heterochromatin reorganization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11759, doi. 10.1093/nar/gky923

By:

Park, Jinyoung;
Lee, Hongmin;
Han, Namshik;
Kwak, Sojung;
Lee, Han-Teo;
Kim, Jae-Hwan;
Kang, Keonjin;
Youn, Byoung Ha;
Yang, Jae-Hyun;
Jeong, Hyeon-Ju;
Kang, Jong-Sun;
Kim, Seon-Young;
Han, Jeung-Whan;
Youn, Hong-Duk;
Cho, Eun-Jung

Publication type:

Article

IRES-dependent ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11952, doi. 10.1093/nar/gky1121

By:

Kerr, Craig H;
Wang, Qing S;
Moon, Kyung-Mee;
Keatings, Kathleen;
Allan, Douglas W;
Foster, Leonard J;
Jan, Eric

Publication type:

Article

Integrative genomic analysis reveals novel regulatory mechanisms of eyeless during Drosophila eye development.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11743, doi. 10.1093/nar/gky892

By:

Yeung, Kelvin;
Wang, Feng;
Li, Yumei;
Wang, Keqing;
Mardon, Graeme;
Chen, Rui

Publication type:

Article

Integration of genetics and miRNA–target gene network identified disease biology implicated in tissue specificity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11898, doi. 10.1093/nar/gky1066

By:

Sakaue, Saori;
Hirata, Jun;
Maeda, Yuichi;
Kawakami, Eiryo;
Nii, Takuro;
Kishikawa, Toshihiro;
Ishigaki, Kazuyoshi;
Terao, Chikashi;
Suzuki, Ken;
Akiyama, Masato;
Suita, Naomasa;
Masuda, Tatsuo;
Ogawa, Kotaro;
Yamamoto, Kenichi;
Saeki, Yukihiko;
Matsushita, Masato;
Yoshimura, Maiko;
Matsuoka, Hidetoshi;
Ikari, Katsunori;
Taniguchi, Atsuo

Publication type:

Article

Identification of new high affinity targets for Roquin based on structural conservation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12109, doi. 10.1093/nar/gky908

By:

Braun, Johannes;
Fischer, Sandra;
Xu, Zhenjiang Z;
Sun, Hongying;
Ghoneim, Dalia H;
Gimbel, Anna T;
Plessmann, Uwe;
Urlaub, Henning;
Mathews, David H;
Weigand, Julia E

Publication type:

Article

Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12008, doi. 10.1093/nar/gky1011

By:

Nishimura, Tamiko;
Fakim, Hana;
Brandmann, Tobias;
Youn, Ji-Young;
Gingras, Anne-Claude;
Jinek, Martin;
Fabian, Marc R

Publication type:

Article

Conditional genome engineering reveals canonical and divergent roles for the Hus1 component of the 9–1–1 complex in the maintenance of the plastic genome of Leishmania.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11835, doi. 10.1093/nar/gky1017

By:

Damasceno, Jeziel D;
Obonaga, Ricardo;
Silva, Gabriel L A;
Reis-Cunha, João L;
Duncan, Samuel M;
Bartholomeu, Daniella C;
Mottram, Jeremy C;
McCulloch, Richard;
Tosi, Luiz R O

Publication type:

Article

Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11883, doi. 10.1093/nar/gky1057

By:

Yella, Venkata Rajesh;
Bhimsaria, Devesh;
Ghoshdastidar, Debostuti;
Rodríguez-Martínez, José A;
Ansari, Aseem Z;
Bansal, Manju

Publication type:

Article

Enzyme cycling contributes to efficient induction of genome mutagenesis by the cytidine deaminase APOBEC3B.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12190, doi. 10.1093/nar/gky1115

By:

Adolph, Madison B;
Love, Robin P;
Feng, Yuqing;
Chelico, Linda

Publication type:

Article

Effect of in vivo post-translational modifications of the HMGB1 protein upon binding to platinated DNA: a molecular simulation study.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11687, doi. 10.1093/nar/gky1082

By:

(Lv), Wenping Lyu;
Arnesano, Fabio;
Carloni, Paolo;
Natile, Giovanni;
Rossetti, Giulia

Publication type:

Article

Dynamic network approach for the modelling of genomic sub-complexes in multi-segmented viruses.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12087, doi. 10.1093/nar/gky881

By:

AlShaikhahmed, Kinda;
Leonov, German;
Sung, Po-Yu;
Bingham, Richard J;
Twarock, Reidun;
Roy, Polly

Publication type:

Article

Genome-wide mapping reveals conserved and diverged R-loop activities in the unusual genetic landscape of the African trypanosome genome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11789, doi. 10.1093/nar/gky928

By:

Briggs, Emma;
Hamilton, Graham;
Crouch, Kathryn;
Lapsley, Craig;
McCulloch, Richard

Publication type:

Article

Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12186, doi. 10.1093/nar/gky1101

By:

Haase, Nadin;
Holtkamp, Wolf;
Lipowsky, Reinhard;
Rodnina, Marina;
Rudorf, Sophia

Publication type:

Article

The C-terminal D/E-rich domain of MBD3 is a putative Z-DNA mimic that competes for Zα DNA-binding activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11806, doi. 10.1093/nar/gky933

By:

Lee, Chi-Hua;
Shih, Yan-Ping;
Ho, Meng-Ru;
Wang, Andrew H-J

Publication type:

Article

CRISPR-C: circularization of genes and chromosome by CRISPR in human cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e131, doi. 10.1093/nar/gky767

By:

Møller, Henrik Devitt;
Lin, Lin;
Xiang, Xi;
Petersen, Trine Skov;
Huang, Jinrong;
Yang, Luhan;
Kjeldsen, Eigil;
Jensen, Uffe Birk;
Zhang, Xiuqing;
Liu, Xin;
Xu, Xun;
Wang, Jian;
Yang, Huanming;
Church, George M;
Bolund, Lars;
Regenberg, Birgitte;
Luo, Yonglun

Publication type:

Article

Cooperative translational control of polymorphic BAFF by NF90 and miR-15a.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12040, doi. 10.1093/nar/gky866

By:

Idda, M Laura;
Lodde, Valeria;
McClusky, Waverly G;
Martindale, Jennifer L;
Yang, Xiaoling;
Munk, Rachel;
Steri, Maristella;
Orrù, Valeria;
Mulas, Antonella;
Cucca, Francesco;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e130, doi. 10.1093/nar/gky740

By:

Haase, Nadin;
Holtkamp, Wolf;
Lipowsky, Reinhard;
Rodnina, Marina;
Rudorf, Sophia

Publication type:

Article

Computational insights into the mutagenicity of two tobacco-derived carcinogenic DNA lesions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11858, doi. 10.1093/nar/gky1071

By:

Wilson, Katie A;
Garden, Josh L;
Wetmore, Natasha T;
Wetmore, Stacey D

Publication type:

Article

A chromatin-associated protein required for inducing and limiting meiotic DNA double-strand break formation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11822, doi. 10.1093/nar/gky968

By:

Tian, Miao;
Loidl, Josef

Publication type:

Article

Cdk1 gates cell cycle-dependent tRNA synthesis by regulating RNA polymerase III activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12188, doi. 10.1093/nar/gky1102

By:

Herrera, Maria C;
Chymkowitch, Pierre;
Robertson, Joseph M;
Eriksson, Jens;
Bøe, Stig Ove;
Alseth, Ingrun;
Enserink, Jorrit M

Publication type:

Article

Bayesian inference of ancestral dates on bacterial phylogenetic trees.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. e134, doi. 10.1093/nar/gky783

By:

Didelot, Xavier;
Croucher, Nicholas J;
Bentley, Stephen D;
Harris, Simon R;
Wilson, Daniel J

Publication type:

Article

Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11990, doi. 10.1093/nar/gky976

By:

McMurrough, Thomas A;
Brown, Christopher M;
Zhang, Kun;
Hausner, Georg;
Junop, Murray S;
Gloor, Gregory B;
Edgell, David R

Publication type:

Article

Cdk1 gates cell cycle-dependent tRNA synthesis by regulating RNA polymerase III activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 11698, doi. 10.1093/nar/gky846

By:

Herrera, Maria C;
Chymkowitch, Pierre;
Robertson, Joseph M;
Eriksson, Jens;
Bøe, Stig Ove;
Alseth, Ingrun;
Enserink, Jorrit M

Publication type:

Article

An autoregulatory loop controlling orphan nuclear receptor DAX-1 gene expression by orphan nuclear receptor ERRγ.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 22, p. 12192, doi. 10.1093/nar/gky1145

By:

Park, Yun-Yong;
Ahn, Seung-Won;
Kim, Hye-Jin;
Kim, Jin-Man;
Lee, In-Kyu;
Kang, Heonjoong;
Choi, Hueng-Sik

Publication type:

Article