Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 21

Results: 47

Aberrant splicing in B-cell acute lymphoblastic leukemia.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11357, doi. 10.1093/nar/gky946

By:

Black, Kathryn L.;
Naqvi, Ammar S.;
Asnani, Mukta;
Hayer, Katharina E.;
Yang, Scarlett Y.;
Gillespie, Elisabeth;
Bagashev, Asen;
Pillai, Vinodh;
Tasian, Sarah K.;
Gazzara, Matthew R.;
Carroll, Martin;
Taylor, Deanne;
Lynch, Kristen W.;
Barash, Yoseph;
Thomas-Tikhonenko, Andrei

Publication type:

Article

CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e124, doi. 10.1093/nar/gky698

By:

Kim, Junil;
Stanescu, Diana E;
Won, Kyoung Jae

Publication type:

Article

Corrigendum: Novel diagnostic tool for prediction of variant spliceogenicity derived from a set of 395 combined in silico/in vitro studies: an international collaborative effort.

Published in:: Nucleic Acids Research, 2018, v. 46, n. 21, p. 11656, doi. 10.1093/nar/gky979
Publication type:: Article

Oligomerization of Drosophila Nucleoplasmin-Like Protein is required for its centromere localization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11274, doi. 10.1093/nar/gky988

By:

Anselm, Eduard;
Thomae, Andreas W.;
Jeyaprakash, A. Arockia;
Heun, Patrick

Publication type:

Article

Capping-RACE: a simple, accurate, and sensitive 5′ RACE method for use in prokaryotes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e129, doi. 10.1093/nar/gky739

By:

Liu, Fang;
Zheng, Ke;
Chen, Huan-Chun;
Liu, Zheng-Fei

Publication type:

Article

Structural basis of 5′ flap recognition and protein–protein interactions of human flap endonuclease 1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11315, doi. 10.1093/nar/gky911

By:

Xu, Hong;
Shi, Rongyi;
Han, Wanchun;
Cheng, Jiahui;
Xu, Xiaoli;
Cheng, Kaiying;
Wang, Liangyan;
Tian, Bing;
Zheng, Li;
Shen, Binghui

Publication type:

Article

The bacterial Mre11–Rad50 homolog SbcCD cleaves opposing strands of DNA by two chemically distinct nuclease reactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11303, doi. 10.1093/nar/gky878

By:

Saathoff, Jan-Hinnerk;
Käshammer, Lisa;
Lammens, Katja;
Byrne, Robert Thomas;
Hopfner, Karl-Peter

Publication type:

Article

An auxin controls bacterial antibiotics production.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11229, doi. 10.1093/nar/gky766

By:

Matilla, Miguel A;
Daddaoua, Abdelali;
Chini, Andrea;
Morel, Bertrand;
Krell, Tino

Publication type:

Article

Substrate specificity of human apurinic/apyrimidinic endonuclease APE1 in the nucleotide incision repair pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11454, doi. 10.1093/nar/gky912

By:

Kuznetsova, Alexandra A;
Matveeva, Anna G;
Milov, Alexander D;
Vorobjev, Yuri N;
Dzuba, Sergei A;
Fedorova, Olga S;
Kuznetsov, Nikita A

Publication type:

Article

Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin–antitoxin system: targeting a tRNase to tackle mycobacterial adaptation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11639, doi. 10.1093/nar/gky924

By:

Deep, Amar;
Tiwari, Prabhakar;
Agarwal, Sakshi;
Kaundal, Soni;
Kidwai, Saqib;
Singh, Ramandeep;
Thakur, Krishan G

Publication type:

Article

Bre1-dependent H2B ubiquitination promotes homologous recombination by stimulating histone eviction at DNA breaks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11326, doi. 10.1093/nar/gky918

By:

Zheng, Sihao;
Li, Dan;
Lu, Zhen;
Liu, Guangxue;
Wang, Meng;
Xing, Poyuan;
Wang, Min;
Dong, Yang;
Wang, Xuejie;
Li, Jingyao

Publication type:

Article

Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11488, doi. 10.1093/nar/gky812

By:

Nomura, Yuichiro;
Roston, Daniel;
Montemayor, Eric J;
Cui, Qiang;
Butcher, Samuel E

Publication type:

Article

Streptococcus suis contains multiple phase-variable methyltransferases that show a discrete lineage distribution.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11466, doi. 10.1093/nar/gky913

By:

Atack, John M;
Weinert, Lucy A;
Tucker, Alexander W;
Husna, Asma U;
Wileman, Thomas M;
F. Hadjirin, Nazreen;
Hoa, Ngo T;
Parkhill, Julian;
Maskell, Duncan J;
Blackall, Patrick J

Publication type:

Article

Assessing genome assembly quality using the LTR Assembly Index (LAI).

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e126, doi. 10.1093/nar/gky730

By:

Ou, Shujun;
Chen, Jinfeng;
Jiang, Ning

Publication type:

Article

Stacking-induced fluorescence increase reveals allosteric interactions through DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11618, doi. 10.1093/nar/gky887

By:

Morten, Michael J;
Lopez, Sergio G;
Steinmark, I Emilie;
Rafferty, Aidan;
Magennis, Steven W

Publication type:

Article

SLING: a tool to search for linked genes in bacterial datasets.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e128, doi. 10.1093/nar/gky738

By:

Horesh, Gal;
Harms, Alexander;
Fino, Cinzia;
Parts, Leopold;
Gerdes, Kenn;
Heinz, Eva;
Thomson, Nicholas Robert

Publication type:

Article

Single-molecule DREEM imaging reveals DNA wrapping around human mitochondrial single-stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11287, doi. 10.1093/nar/gky875

By:

Kaur, Parminder;
Longley, Matthew J;
Pan, Hai;
Wang, Hong;
Copeland, William C

Publication type:

Article

Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11370, doi. 10.1093/nar/gky991

By:

Ruf-Zamojski, Frederique;
Ge, Yongchao;
Nair, Venugopalan;
Zamojski, Michel;
Pincas, Hanna;
Toufaily, Chirine;
Tome-Garcia, Jessica;
Stoeckius, Marlon;
Stephenson, William;
Smith, Gregory R

Publication type:

Article

The RNA exosome contributes to gene expression regulation during stem cell differentiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11502, doi. 10.1093/nar/gky817

By:

Lloret-Llinares, Marta;
Karadoulama, Evdoxia;
Chen, Yun;
Wojenski, Luke A;
Villafano, Geno J;
Bornholdt, Jette;
Andersson, Robin;
Core, Leighton;
Sandelin, Albin;
Jensen, Torben Heick

Publication type:

Article

A Rev–CBP80–eIF4AI complex drives Gag synthesis from the HIV-1 unspliced mRNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11539, doi. 10.1093/nar/gky851

By:

Toro-Ascuy, Daniela;
Rojas-Araya, Bárbara;
García-de-Gracia, Francisco;
Rojas-Fuentes, Cecilia;
Pereira-Montecinos, Camila;
Gaete-Argel, Aracelly;
Valiente-Echeverría, Fernando;
Ohlmann, Théophile;
Soto-Rifo, Ricardo

Publication type:

Article

Regulation of HLTF-mediated PCNA polyubiquitination by RFC and PCNA monoubiquitination levels determines choice of damage tolerance pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11340, doi. 10.1093/nar/gky943

By:

Masuda, Yuji;
Mitsuyuki, Satoshi;
Kanao, Rie;
Hishiki, Asami;
Hashimoto, Hiroshi;
Masutani, Chikahide

Publication type:

Article

Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11477, doi. 10.1093/nar/gky919

By:

Pupov, Danil;
Petushkov, Ivan;
Esyunina, Daria;
Murakami, Katsuhiko S;
Kulbachinskiy, Andrey

Publication type:

Article

Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11169, doi. 10.1093/nar/gky915

By:

Telekawa, Caroline;
Boisvert, François-Michel;
Bachand, François

Publication type:

Article

Principles of chemical geometry underlying chiral selectivity in RNA minihelix aminoacylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11144, doi. 10.1093/nar/gky909

By:

Ando, Tadashi;
Takahashi, Shunichi;
Tamura, Koji

Publication type:

Article

The APT complex is involved in non-coding RNA transcription and is distinct from CPF.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11528, doi. 10.1093/nar/gky845

By:

Lidschreiber, Michael;
Easter, Ashley D;
Battaglia, Sofia;
Rodríguez-Molina, Juan B;
Casañal, Ana;
Carminati, Manuel;
Baejen, Carlo;
Grzechnik, Pawel;
Maier, Kerstin C;
Cramer, Patrick

Publication type:

Article

NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11605, doi. 10.1093/nar/gky886

By:

Brčić, Jasna;
Plavec, Janez

Publication type:

Article

Monitored eCLIP: high accuracy mapping of RNA-protein interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11553, doi. 10.1093/nar/gky858

By:

Hocq, Rémi;
Paternina, Janio;
Alasseur, Quentin;
Genovesio, Auguste;
Le Hir, Hervé

Publication type:

Article

High-resolution DNA quadruplex structure containing all the A-, G-, C-, T-tetrads.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11627, doi. 10.1093/nar/gky902

By:

Liu, Hehua;
Wang, Rui;
Yu, Xiang;
Shen, Fusheng;
Lan, Wenxian;
Haruehanroengra, Phensinee;
Yao, Qingqing;
Zhang, Jing;
Chen, Yiqing;
Li, Suhua

Publication type:

Article

HiCDB: a sensitive and robust method for detecting contact domain boundaries.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11239, doi. 10.1093/nar/gky789

By:

Chen, Fengling;
Li, Guipeng;
Zhang, Michael Q;
Chen, Yang

Publication type:

Article

Interplay between transcription regulators RUNX1 and FUBP1 activates an enhancer of the oncogene c-KIT and amplifies cell proliferation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11214, doi. 10.1093/nar/gky756

By:

Debaize, Lydie;
Jakobczyk, Hélène;
Avner, Stéphane;
Gaudichon, Jérémie;
Rio, Anne-Gaëlle;
Sérandour, Aurélien A;
Dorsheimer, Lena;
Chalmel, Frédéric;
Carroll, Jason S;
Zörnig, Martin

Publication type:

Article

Human GTPBP10 is required for mitoribosome maturation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11423, doi. 10.1093/nar/gky938

By:

Maiti, Priyanka;
Kim, Hyun-Jung;
Tu, Ya-Ting;
Barrientos, Antoni

Publication type:

Article

Homodimerization regulates an endothelial specific signature of the SOX18 transcription factor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11381, doi. 10.1093/nar/gky897

By:

Moustaqil, Mehdi;
Fontaine, Frank;
Overman, Jeroen;
McCann, Alex;
Bailey, Timothy L;
Rudolffi Soto, Paulina;
Bhumkar, Akshay;
Giles, Nichole;
Hunter, Dominic J B;
Gambin, Yann

Publication type:

Article

Modulation of MKNK2 alternative splicing by splice-switching oligonucleotides as a novel approach for glioblastoma treatment.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11396, doi. 10.1093/nar/gky921

By:

Mogilevsky, Maxim;
Shimshon, Odelia;
Kumar, Saran;
Mogilevsky, Adi;
Keshet, Eli;
Yavin, Eylon;
Heyd, Florian;
Karni, Rotem

Publication type:

Article

Modular 5′-UTR hexamers for context-independent tuning of protein expression in eukaryotes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e127, doi. 10.1093/nar/gky734

By:

Petersen, Søren D;
Zhang, Jie;
Lee, Jae S;
Jakočiūnas, Tadas;
Grav, Lise M;
Kildegaard, Helene F;
Keasling, Jay D;
Jensen, Michael K

Publication type:

Article

Hercules: a profile HMM-based hybrid error correction algorithm for long reads.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. e125, doi. 10.1093/nar/gky724

By:

Firtina, Can;
Bar-Joseph, Ziv;
Alkan, Can;
Cicek, A Ercument

Publication type:

Article

Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11592, doi. 10.1093/nar/gky861

By:

Herdy, Barbara;
Mayer, Clemens;
Varshney, Dhaval;
Marsico, Giovanni;
Murat, Pierre;
Taylor, Chris;
D'Santos, Clive;
Tannahill, David;
Balasubramanian, Shankar

Publication type:

Article

Distinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11262, doi. 10.1093/nar/gky827

By:

Garg, Angad;
Goldgur, Yehuda;
Schwer, Beate;
Shuman, Stewart

Publication type:

Article

Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11438, doi. 10.1093/nar/gky906

By:

Kwun, Min Jung;
Oggioni, Marco R;
De Ste Croix, Megan;
Bentley, Stephen D;
Croucher, Nicholas J

Publication type:

Article

Enterovirus 71 antagonizes the inhibition of the host intrinsic antiviral factor A3G.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11514, doi. 10.1093/nar/gky840

By:

Li, Zhaolong;
Ning, Shanshan;
Su, Xing;
Liu, Xin;
Wang, Hong;
Liu, Yue;
Zheng, Wenwen;
Zheng, Baisong;
Yu, Xiao-Fang;
Zhang, Wenyan

Publication type:

Article

DYRK1A interacts with histone acetyl transferase p300 and CBP and localizes to enhancers.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11202, doi. 10.1093/nar/gky754

By:

Li, Shanshan;
Xu, Chu;
Fu, Yinkun;
Lei, Pin-Ji;
Yao, Yanhua;
Yang, Wanli;
Zhang, Ying;
Washburn, Michael P;
Florens, Laurence;
Jaiswal, Manish

Publication type:

Article

Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11251, doi. 10.1093/nar/gky801

By:

van Welsem, Tibor;
Korthout, Tessy;
Ekkebus, Reggy;
Morais, Dominique;
Molenaar, Thom M;
van Harten, Kirsten;
Poramba-Liyanage, Deepani W;
Sun, Su Ming;
Lenstra, Tineke L;
Srivas, Rohith

Publication type:

Article

Genome-wide identification of genic and intergenic neuronal DNA regions bound by Tau protein under physiological and stress conditions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11405, doi. 10.1093/nar/gky929

By:

Benhelli-Mokrani, Houda;
Mansuroglu, Zeyni;
Chauderlier, Alban;
Albaud, Benoit;
Gentien, David;
Sommer, Sabrina;
Schirmer, Claire;
Laqueuvre, Lucie;
Josse, Thibaut;
Buée, Luc

Publication type:

Article

Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11184, doi. 10.1093/nar/gky753

By:

Fu, Shaliu;
Wang, Qin;
Moore, Jill E;
Purcaro, Michael J;
Pratt, Henry E;
Fan, Kaili;
Gu, Cuihua;
Jiang, Cizhong;
Zhu, Ruixin;
Kundaje, Anshul

Publication type:

Article

Crosstalk among Set1 complex subunits involved in H2B ubiquitylation-dependent H3K4 methylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11129, doi. 10.1093/nar/gky920

By:

Jeon, Jongcheol;
McGinty, Robert K;
Muir, Tom W;
Kim, Jung-Ae;
Kim, Jaehoon

Publication type:

Article

Comprehensive analysis of the BC200 ribonucleoprotein reveals a reciprocal regulatory function with CSDE1/UNR.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11575, doi. 10.1093/nar/gky860

By:

Booy, Evan P;
McRae, Ewan KS;
Ezzati, Peyman;
Choi, Taegi;
Gussakovsky, Daniel;
McKenna, Sean A

Publication type:

Article

CLIPick: a sensitive peak caller for expression-based deconvolution of HITS-CLIP signals.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11153, doi. 10.1093/nar/gky917

By:

Park, Sihyung;
Ahn, Seung Hyun;
Cho, Eun Sol;
Cho, You Kyung;
Jang, Eun-Sook;
Chi, Sung Wook

Publication type:

Article

Sustenance of Escherichia coli on a single tRNAMet.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 21, p. 11566, doi. 10.1093/nar/gky859

By:

Govindan, Ashwin;
Ayyub, Shreya Ahana;
Varshney, Umesh

Publication type:

Article