Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 20

Results: 48

Disentangling transcription factor binding site complexity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e121, doi. 10.1093/nar/gky683

By:

Eggeling, Ralf

Publication type:

Article

Deletion of Mtu1 (Trmu) in zebrafish revealed the essential role of tRNA modification in mitochondrial biogenesis and hearing function.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10930, doi. 10.1093/nar/gky758

By:

Zhang, Qinghai;
Zhang, Luwen;
Chen, Danni;
He, Xiao;
Yao, Shihao;
Zhang, Zengming;
Chen, Ye;
Guan, Min-Xin

Publication type:

Article

Coordinated protein and DNA conformational changes govern mismatch repair initiation by MutS.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10782, doi. 10.1093/nar/gky865

By:

LeBlanc, Sharonda J;
Gauer, Jacob W;
Hao, Pengyu;
Case, Brandon C;
Hingorani, Manju M;
Weninger, Keith R;
Erie, Dorothy A

Publication type:

Article

Controller protein of restriction–modification system Kpn2I affects transcription of its gene by acting as a transcription elongation roadblock.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10810, doi. 10.1093/nar/gky880

By:

Klimuk, Evgeny;
Bogdanova, Ekaterina;
Nagornykh, Max;
Rodic, Andjela;
Djordjevic, Marko;
Medvedeva, Sofia;
Pavlova, Olga;
Severinov, Konstantin

Publication type:

Article

Conserved sequences in the Drosophila mod(mdg4) intron promote poly(A)-independent transcription termination and trans-splicing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10608, doi. 10.1093/nar/gky716

By:

Tikhonov, Maxim;
Utkina, Marina;
Maksimenko, Oksana;
Georgiev, Pavel

Publication type:

Article

Viroid research and its significance for RNA technology and basic biochemistry.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10563, doi. 10.1093/nar/gky903

By:

Steger, Gerhard;
Riesner, Detlev

Publication type:

Article

A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10840, doi. 10.1093/nar/gky848

By:

Liu, Weichi;
Shi, Xiaoling;
Gong, Peng

Publication type:

Article

Umap and Bismap: quantifying genome and methylome mappability.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e120, doi. 10.1093/nar/gky677

By:

Karimzadeh, Mehran;
Ernst, Carl;
Kundaje, Anshul;
Hoffman, Michael M

Publication type:

Article

TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e122, doi. 10.1093/nar/gky685

By:

Rajaby, Ramesh;
Sung, Wing-Kin

Publication type:

Article

Transcript availability dictates the balance between strand-asynchronous and strand-coupled mitochondrial DNA replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10771, doi. 10.1093/nar/gky852

By:

Cluett, Tricia J;
Akman, Gokhan;
Reyes, Aurelio;
Kazak, Lawrence;
Mitchell, Alice;
Wood, Stuart R;
Spinazzola, Antonella;
Spelbrink, Johannes N;
Holt, Ian J

Publication type:

Article

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10682, doi. 10.1093/nar/gky752

By:

Gao, Ye;
Yurkovich, James T;
Seo, Sang Woo;
Kabimoldayev, Ilyas;
Dräger, Andreas;
Chen, Ke;
Sastry, Anand V;
Fang, Xin;
Mih, Nathan;
Yang, Laurence

Publication type:

Article

A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase – extensive moonlighting in mitochondrial tRNA biogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11126, doi. 10.1093/nar/gky931

By:

Vilardo, Elisa;
Nachbagauer, Christa;
Buzet, Aurélie;
Taschner, Andreas;
Holzmann, Johann;
Rossmanith, Walter

Publication type:

Article

Structural insights into DNA degradation by human mitochondrial nuclease MGME1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11075, doi. 10.1093/nar/gky855

By:

Yang, Chun;
Wu, Ruiqi;
Liu, Hehua;
Chen, Yiqing;
Gao, Yanqing;
Chen, Xi;
Li, Yangyang;
Ma, Jinbiao;
Li, Jixi;
Gan, Jianhua

Publication type:

Article

Snapshots of archaeal DNA replication and repair in living cells using super-resolution imaging.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10757, doi. 10.1093/nar/gky829

By:

Delpech, Floriane;
Collien, Yoann;
Mahou, Pierre;
Beaurepaire, Emmanuel;
Myllykallio, Hannu;
Lestini, Roxane

Publication type:

Article

Conformational switch in the ribosomal protein S1 guides unfolding of structured RNAs for translation initiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10917, doi. 10.1093/nar/gky746

By:

Qureshi, Nusrat Shahin;
Bains, Jasleen Kaur;
Sreeramulu, Sridhar;
Schwalbe, Harald;
Fürtig, Boris

Publication type:

Article

Small RNA sequences derived from pre-microRNAs in the supraspliceosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11014, doi. 10.1093/nar/gky791

By:

Mahlab-Aviv, Shelly;
Boulos, Ayub;
Peretz, Ayelet R;
Eliyahu, Tsiona;
Carmel, Liran;
Sperling, Ruth;
Linial, Michal

Publication type:

Article

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e123, doi. 10.1093/nar/gky691

By:

Zhou, Wanding;
Triche, Timothy J;
Laird, Peter W;
Shen, Hui

Publication type:

Article

Role of ribosome assembly in Escherichia coli ribosomal RNA degradation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11048, doi. 10.1093/nar/gky808

By:

Jain, Chaitanya

Publication type:

Article

Role of aIF1 in Pyrococcus abyssi translation initiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11061, doi. 10.1093/nar/gky850

By:

Monestier, Auriane;
Lazennec-Schurdevin, Christine;
Coureux, Pierre-Damien;
Mechulam, Yves;
Schmitt, Emmanuelle

Publication type:

Article

Regulation of muscle atrophy-related genes by the opposing transcriptional activities of ZEB1/CtBP and FOXO3.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10697, doi. 10.1093/nar/gky835

By:

Ninfali, Chiara;
Siles, Laura;
Darling, Douglas S;
Postigo, Antonio

Publication type:

Article

Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10535, doi. 10.1093/nar/gky910

By:

Rawson, Jonathan M O;
Nikolaitchik, Olga A;
Keele, Brandon F;
Pathak, Vinay K;
Hu, Wei-Shau

Publication type:

Article

QstR-dependent regulation of natural competence and type VI secretion in Vibrio cholerae.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10619, doi. 10.1093/nar/gky717

By:

Jaskólska, Milena;
Stutzmann, Sandrine;
Stoudmann, Candice;
Blokesch, Melanie

Publication type:

Article

Progressing super-enhancer landscape during mammary differentiation controls tissue-specific gene regulation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10796, doi. 10.1093/nar/gky891

By:

Lee, Hye Kyung;
Willi, Michaela;
Shin, Ha Youn;
Liu, Chengyu;
Hennighausen, Lothar

Publication type:

Article

Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10969, doi. 10.1093/nar/gky765

By:

Fröhlich, Kathrin S;
Förstner, Konrad U;
Gitai, Zemer

Publication type:

Article

PLK1 targets CtIP to promote microhomology-mediated end joining.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10724, doi. 10.1093/nar/gky810

By:

Wang, Hailong;
Qiu, Zhiyu;
Liu, Bo;
Wu, Yan;
Ren, Jianping;
Liu, Yaqing;
Zhao, Yuqin;
Wang, Ya;
Hao, Shuailin;
Li, Zheng

Publication type:

Article

The Arabidopsis LDL1/2-HDA6 histone modification complex is functionally associated with CCA1/LHY in regulation of circadian clock genes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10669, doi. 10.1093/nar/gky749

By:

Hung, Fu-Yu;
Chen, Fang-Fang;
Li, Chenlong;
Chen, Chen;
Lai, You-Cheng;
Chen, Jian-Hao;
Cui, Yuhai;
Wu, Keqiang

Publication type:

Article

A piRNA utilizes HILI and HIWI2 mediated pathway to down-regulate ferritin heavy chain 1 mRNA in human somatic cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10635, doi. 10.1093/nar/gky728

By:

Balaratnam, Sumirtha;
West, Nicole;
Basu, Soumitra

Publication type:

Article

Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10827, doi. 10.1093/nar/gky893

By:

Gruber, David R;
Toner, Joanna J;
Miears, Heather L;
Shernyukov, Andrey V;
Kiryutin, Alexey S;
Lomzov, Alexander A;
Endutkin, Anton V;
Grin, Inga R;
Petrova, Darya V;
Kupryushkin, Maxim S

Publication type:

Article

The NTP binding site of the polymerase ribozyme.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10589, doi. 10.1093/nar/gky898

By:

Akoopie, Arvin;
Müller, Ulrich F

Publication type:

Article

Northern lights assay: a versatile method for comprehensive detection of DNA damage.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e118, doi. 10.1093/nar/gky645

By:

Gudmundsson, Bjarki;
Thormar, Hans G;
Sigurdsson, Albert;
Dankers, Wendy;
Steinarsdottir, Margret;
Hermanowicz, Stefan;
Sigurdsson, Stefan;
Olafsson, David;
Halldorsdottir, Anna M;
Meyn, Stephen

Publication type:

Article

Nonfilament-forming RecA dimer catalyzes homologous joint formation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10855, doi. 10.1093/nar/gky877

By:

Shinohara, Takeshi;
Arai, Naoto;
Iikura, Yukari;
Kasagi, Motochika;
Masuda-Ozawa, Tokiha;
Yamaguchi, Yuuki;
Suzuki-Nagata, Kayo;
Shibata, Takehiko;
Mikawa, Tsutomu

Publication type:

Article

Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11030, doi. 10.1093/nar/gky802

By:

Cáceres, C Joaquín;
Angulo, Jenniffer;
Lowy, Fernando;
Contreras, Nataly;
Walters, Beth;
Olivares, Eduardo;
Allouche, Delphine;
Merviel, Anne;
Pino, Karla;
Sargueil, Bruno

Publication type:

Article

MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10888, doi. 10.1093/nar/gky896

By:

Jemth, Ann-Sofie;
Gustafsson, Robert;
Bräutigam, Lars;
Henriksson, Linda;
Vallin, Karl S A;
Sarno, Antonio;
Almlöf, Ingrid;
Homan, Evert;
Rasti, Azita;
Warpman Berglund, Ulrika

Publication type:

Article

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10546, doi. 10.1093/nar/gky889

By:

Rappoport, Nimrod;
Shamir, Ron

Publication type:

Article

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11089, doi. 10.1093/nar/gky863

By:

Liu, Yijin;
Freeman, Alasdair DJ;
Déclais, Anne-Cécile;
Lilley, David M J

Publication type:

Article

Mathematical modeling identifies potential gene structure determinants of co-transcriptional control of alternative pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10598, doi. 10.1093/nar/gky870

By:

Davis-Turak, Jeremy;
Johnson, Tracy L;
Hoffmann, Alexander

Publication type:

Article

Active site closure stabilizes the backtracked state of RNA polymerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10870, doi. 10.1093/nar/gky883

By:

Turtola, Matti;
Mäkinen, Janne J;
Belogurov, Georgiy A

Publication type:

Article

Mapping interfacial hydration in ETS-family transcription factor complexes with DNA: a chimeric approach.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10577, doi. 10.1093/nar/gky894

By:

Albrecht, Amanda V;
Kim, Hye Mi;
Poon, Gregory M K

Publication type:

Article

Impulse model-based differential expression analysis of time course sequencing data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. e119, doi. 10.1093/nar/gky675

By:

Fischer, David S;
Theis, Fabian J;
Yosef, Nir

Publication type:

Article

Identification of the RNA polymerase I-RNA interactome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11002, doi. 10.1093/nar/gky779

By:

Piñeiro, David;
Stoneley, Mark;
Ramakrishna, Manasa;
Alexandrova, Jana;
Dezi, Veronica;
Juke-Jones, Rebekha;
Lilley, Kathryn S;
Cain, Kelvin;
Willis, Anne E

Publication type:

Article

I260Q DNA polymerase β highlights precatalytic conformational rearrangements critical for fidelity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10740, doi. 10.1093/nar/gky825

By:

Liptak, Cary;
Mahmoud, Mariam M;
Eckenroth, Brian E;
Moreno, Marcus V;
East, Kyle;
Alnajjar, Khadijeh S;
Huang, Ji;
Towle-Weicksel, Jamie B;
Doublié, Sylvie;
Loria, J Patrick

Publication type:

Article

How to fold and protect mitochondrial ribosomal RNA with fewer guanines.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10946, doi. 10.1093/nar/gky762

By:

Hosseini, Maryam;
Roy, Poorna;
Sissler, Marie;
Zirbel, Craig L;
Westhof, Eric;
Leontis, Neocles

Publication type:

Article

High-affinity RNA targets of the Survival Motor Neuron protein reveal diverse preferences for sequence and structural motifs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10983, doi. 10.1093/nar/gky770

By:

Ottesen, Eric W;
Singh, Natalia N;
Luo, Diou;
Singh, Ravindra N

Publication type:

Article

Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11099, doi. 10.1093/nar/gky885

By:

Rangadurai, Atul;
Zhou, Huiqing;
Merriman, Dawn K;
Meiser, Nathalie;
Liu, Bei;
Shi, Honglue;
Szymanski, Eric S;
Al-Hashimi, Hashim M

Publication type:

Article

Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 11115, doi. 10.1093/nar/gky884

By:

Zhang, Shuyi;
Voigt, Christopher A

Publication type:

Article

Efficiency and precision of microRNA biogenesis modes in plants.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10709, doi. 10.1093/nar/gky853

By:

Moro, Belén;
Chorostecki, Uciel;
Arikit, Siwaret;
Suarez, Irina P;
Höbartner, Claudia;
Rasia, Rodolfo M;
Meyers, Blake C;
Palatnik, Javier F

Publication type:

Article

Functional features defining the efficacy of cholesterol-conjugated, self-deliverable, chemically modified siRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10905, doi. 10.1093/nar/gky745

By:

Shmushkovich, Taisia;
Monopoli, Kathryn R;
Homsy, Diana;
Leyfer, Dmitriy;
Betancur-Boissel, Monica;
Khvorova, Anastasia;
Wolfson, Alexey D

Publication type:

Article

Endogenous single-strand DNA breaks at RNA polymerase II promoters in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 20, p. 10649, doi. 10.1093/nar/gky743

By:

Hegedüs, Éva;
Kókai, Endre;
Nánási, Péter;
Imre, László;
Halász, László;
Jossé, Rozenn;
Antunovics, Zsuzsa;
Webb, Martin R;
El Hage, Aziz;
Pommier, Yves

Publication type:

Article