Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 2

Results: 45

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 873, doi. 10.1093/nar/gkx1264

By:

Vlot, Marnix;
Houkes, Joep;
Lochs, Silke J A;
Swarts, Daan C;
Zheng, Peiyuan;
Kunne, Tim;
Mohanraju, Prarthana;
Anders, Carolin;
Jinek, Martin;
van der Oost, John

Publication type:

Article

Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 568, doi. 10.1093/nar/gkx1261

By:

Da, Lin-Tai;
Shi, Yi;
Ning, Guodong;
Yu, Jin

Publication type:

Article

TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 861, doi. 10.1093/nar/gkx1247

By:

Bizard, Anna H;
Yang, Xi;
Débat, Hélène;
Fogg, Jonathan M;
Zechiedrich, Lynn;
Strick, Terence R;
Garnier, Florence;
Nadal, Marc

Publication type:

Article

Differential RPA-1 and RAD-51 recruitment in vivo throughout the C. elegans germline, as revealed by laser microirradiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 748, doi. 10.1093/nar/gkx1243

By:

Koury, Emily;
Harrell, Kailey;
Smolikove, Sarit

Publication type:

Article

Veratramine modulates AP-1-dependent gene transcription by directly binding to programmable DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 546, doi. 10.1093/nar/gkx1241

By:

Bai, Fang;
Liu, Kangdong;
Li, Huiliang;
Wang, Jiawei;
Zhu, Junsheng;
Hao, Pei;
Zhu, Lili;
Zhang, Shoude;
Shan, Lei;
Ma, Weiya

Publication type:

Article

Nuclear poly(A)-binding protein 1 is an ATM target and essential for DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 730, doi. 10.1093/nar/gkx1240

By:

Gavish-Izakson, Michal;
Velpula, Bhagya Bhavana;
Elkon, Ran;
Prados-Carvajal, Rosario;
Barnabas, Georgina D;
Ugalde, Alejandro Pineiro;
Agami, Reuven;
Geiger, Tamar;
Huertas, Pablo;
Ziv, Yael

Publication type:

Article

Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 538, doi. 10.1093/nar/gkx1238

By:

Joffroy, Bastian;
Uca, Yavuz O;
Prešern, Domen;
Doye, Jonathan P. K;
Schmidt, Thorsten L

Publication type:

Article

Editing activity for eliminating mischarged tRNAs is essential in mammalian mitochondria.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 849, doi. 10.1093/nar/gkx1231

By:

Hilander, Taru;
Zhou, Xiao-Long;
Konovalova, Svetlana;
Zhang, Fu-Ping;
Euro, Liliya;
Chilov, Dmitri;
Poutanen, Matti;
Chihade, Joseph;
Wang, En-Duo;
Tyynismaa, Henna

Publication type:

Article

USP9X controls translation efficiency via deubiquitination of eukaryotic translation initiation factor 4A1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 823, doi. 10.1093/nar/gkx1226

By:

Li, Zengxia;
Cheng, Zhao;
Raghothama, Chaerkady;
Cui, Zhaomeng;
Liu, Kaiyu;
Li, Xiaojing;
Jiang, Chenxiao;
Jiang, Wei;
Tan, Minjia;
Ni, Xiaohua

Publication type:

Article

LncRNA lnc-RI regulates homologous recombination repair of DNA double-strand breaks by stabilizing RAD51 mRNA as a competitive endogenous RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 717, doi. 10.1093/nar/gkx1224

By:

Shen, Liping;
Wang, Qi;
Liu, Ruixue;
Chen, Zhongmin;
Zhang, Xueqing;
Zhou, Pingkun;
Wang, Zhidong

Publication type:

Article

Fission yeast Ccq1 is a modulator of telomerase activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 704, doi. 10.1093/nar/gkx1223

By:

Armstrong, Christine A;
Moiseeva, Vera;
Collopy, Laura C;
Pearson, Siân R;
Ullah, Tomalika R;
Xi, Shidong T;
Martin, Jennifer;
Subramaniam, Shaan;
Marelli, Sara;
Amelina, Hanna

Publication type:

Article

Energetic funnel facilitates facilitated diffusion.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 558, doi. 10.1093/nar/gkx1220

By:

Cencini, Massimo;
Pigolotti, Simone

Publication type:

Article

Tyrosyl-DNA phosphodiesterases: rescuing the genome from the risks of relaxation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 520, doi. 10.1093/nar/gkx1219

By:

Kawale, Ajinkya S;
Povirk, Lawrence F

Publication type:

Article

Structural and functional analysis of an OB-fold in human Ctc1 implicated in telomere maintenance and bone marrow syndromes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 972, doi. 10.1093/nar/gkx1213

By:

Shastrula, Prashanth K;
Rice, Cory T;
Wang, Zhuo;
Lieberman, Paul M;
Skordalakes, Emmanuel

Publication type:

Article

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 956, doi. 10.1093/nar/gkx1210

By:

Pflug, Alexander;
Gaudon, Stephanie;
Resa-Infante, Patricia;
Lethier, Mathilde;
Reich, Stefan;
Schulze, Wiebke M;
Cusack, Stephen

Publication type:

Article

Acetylation of 53BP1 dictates the DNA double strand break repair pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 689, doi. 10.1093/nar/gkx1208

By:

Guo, Xiang;
Bai, Yongtai;
Zhao, Meimei;
Zhou, Mei;
Shen, Qinjian;
Yun, Cai-Hong;
Zhang, Hongquan;
Zhu, Wei-Guo;
Wang, Jiadong

Publication type:

Article

The C-terminal domain of p53 orchestrates the interplay between non-covalent and covalent poly(ADP-ribosyl)ation of p53 by PARP1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 804, doi. 10.1093/nar/gkx1205

By:

Fischbach, Arthur;
Krüger, Annika;
Hampp, Stephanie;
Assmann, Greta;
Rank, Lisa;
Hufnagel, Matthias;
Stöckl, Martin T;
Fischer, Jan M.F;
Veith, Sebastian;
Rossatti, Pascal

Publication type:

Article

Binary control of enzymatic cleavage of DNA origami by structural antideterminants.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 995, doi. 10.1093/nar/gkx1204

By:

Stopar, Alex;
Coral, Lucia;
Di Giacomo, Stefano;
Adedeji, Abimbola F;
Castronovo, Matteo

Publication type:

Article

Mechanisms of bacterial DNA replication restart.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 504, doi. 10.1093/nar/gkx1203

By:

Windgassen, Tricia A;
Wessel, Sarah R;
Bhattacharyya, Basudeb;
Keck, James L

Publication type:

Article

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 765, doi. 10.1093/nar/gkx1202

By:

Gerasimov, Evgeny S;
Gasparyan, Anna A;
Kaurov, Iosif;
Tichý, Boris;
Logacheva, Maria D;
Kolesnikov, Alexander A;
Lukeš, Julius;
Yurchenko, Vyacheslav;
Zimmer, Sara L;
Flegontov, Pavel

Publication type:

Article

Improving CRISPR-Cas specificity with chemical modifications in single-guide RNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 792, doi. 10.1093/nar/gkx1199

By:

Ryan, Daniel E;
Taussig, David;
Steinfeld, Israel;
Phadnis, Smruti M;
Lunstad, Benjamin D;
Singh, Madhurima;
Vuong, Xuan;
Okochi, Kenji D;
McCaffrey, Ryan;
Olesiak, Magdalena

Publication type:

Article

The non-specific adenine DNA methyltransferase M.EcoGII.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 840, doi. 10.1093/nar/gkx1191

By:

Murray, Iain A;
Morgan, Richard D;
Luyten, Yvette;
Fomenkov, Alexey;
Corrêa, Ivan R.;
Dai, Nan;
Allaw, Mohammed B;
Zhang, Xing;
Cheng, Xiaodong;
Roberts, Richard J

Publication type:

Article

E-motif formed by extrahelical cytosine bases in DNA homoduplexes of trinucleotide and hexanucleotide repeats.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 942, doi. 10.1093/nar/gkx1186

By:

Pan, Feng;
Zhang, Yuan;
Man, Viet Hoang;
Roland, Christopher;
Sagui, Celeste

Publication type:

Article

Biochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 929, doi. 10.1093/nar/gkx1183

By:

Agarwal, Sorabh;
Cho, Thomas Yoonsang

Publication type:

Article

Reconstitution of the CstF complex unveils a regulatory role for CstF-50 in recognition of 3'-end processing signals.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 493, doi. 10.1093/nar/gkx1177

By:

Yang, Wen;
Hsu, Peter L;
Yang, Fan;
Song, Jae-Eun;
Varani, Gabriele

Publication type:

Article

Influence of thermodynamically unfavorable secondary structures on DNA hybridization kinetics.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 782, doi. 10.1093/nar/gkx1171

By:

Hata, Hiroaki;
Kitajima, Tetsuro;
Suyama, Akira

Publication type:

Article

Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 917, doi. 10.1093/nar/gkx1169

By:

Ribeiro, Diogo M;
Zanzoni, Andreas;
Cipriano, Andrea;
Delli Ponti, Riccardo;
Spinelli, Lionel;
Ballarino, Monica;
Bozzoni, Irene;
Tartaglia, Gian Gaetano;
Brun, Christine

Publication type:

Article

Efficient RNA pseudouridylation by eukaryotic H/ACA ribonucleoproteins requires high affinity binding and correct positioning of guide RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 905, doi. 10.1093/nar/gkx1167

By:

Caton, Evan A;
Kelly, Erin K;
Kamalampeta, Rajashekhar;
Kothe, Ute

Publication type:

Article

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 582, doi. 10.1093/nar/gkx1165

By:

Reyes, Alejandro;
Huber, Wolfgang

Publication type:

Article

Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 677, doi. 10.1093/nar/gkx1146

By:

Duchi, Diego;
Gryte, Kristofer;
Robb, Nicole C;
Morichaud, Zakia;
Sheppard, Carol;
Brodolin, Konstantin;
Wigneshweraraj, Sivaramesh;
Kapanidis, Achillefs N

Publication type:

Article

The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 661, doi. 10.1093/nar/gkx1142

By:

Cogoi, Susanna;
Ferino, Annalisa;
Miglietta, Giulia;
Pedersen, Erik B;
Xodo, Luigi E

Publication type:

Article

DNA knots occur in intracellular chromatin.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 650, doi. 10.1093/nar/gkx1137

By:

Valdés, Antonio;
Segura, Joana;
Dyson, Sílvia;
Martínez-García, Belén;
Roca, Joaquim

Publication type:

Article

Structural rearrangements in mRNA upon its binding to human 80S ribosomes revealed by EPR spectroscopy.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 897, doi. 10.1093/nar/gkx1136

By:

Malygin, Alexey A;
Graifer, Dmitri M;
Meschaninova, Maria I;
Venyaminova, Alya G;
Timofeev, Ivan O;
Kuzhelev, Andrey A;
Krumkacheva, Olesya A;
Fedin, Matvey V;
Karpova, Galina G;
Bagryanskaya, Elena G

Publication type:

Article

Single-molecule compaction of megabase-long chromatin molecules by multivalent cations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 635, doi. 10.1093/nar/gkx1135

By:

Zinchenko, Anatoly;
Berezhnoy, Nikolay V;
Wang, Sai;
Rosencrans, William M;
Korolev, Nikolay;
van der Maarel, Johan R C;
Nordenskiöld, Lars

Publication type:

Article

Paf1 and Ctr9, core components of the PAF1 complex, maintain low levels of telomeric repeat containing RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 621, doi. 10.1093/nar/gkx1131

By:

Rodrigues, Joana;
Lydall, David

Publication type:

Article

Specific G-quadruplex ligands modulate the alternative splicing of Bcl-X.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 886, doi. 10.1093/nar/gkx1122

By:

Weldon, Carika;
Dacanay, Justine G;
Gokhale, Vijay;
Boddupally, Peda Venkat L;
Behm-Ansmant, Isabelle;
Burley, Glenn A;
Branlant, Christiane;
Hurley, Laurence H;
Dominguez, Cyril;
Eperon, Ian C

Publication type:

Article

Complete motif analysis of sequence requirements for translation initiation at non-AUG start codons.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 985, doi. 10.1093/nar/gkx1114

By:

Diaz de Arce, Alexander J;
Noderer, William L;
Wang, Clifford L

Publication type:

Article

The histone variant H2A.Z promotes initiation of meiotic recombination in fission yeast.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 609, doi. 10.1093/nar/gkx1110

By:

Yamada, Shintaro;
Kugou, Kazuto;
Ding, Da-Qiao;
Fujita, Yurika;
Hiraoka, Yasushi;
Murakami, Hiroshi;
Ohta, Kunihiro;
Yamada, Takatomi

Publication type:

Article

A bacterial three-hybrid assay detects Escherichia coli Hfq-sRNA interactions in vivo.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx1086

By:

Berry, Katherine E;
Hochschild, Ann

Publication type:

Article

FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx1059

By:

Zhou, Jianyu;
Ma, Shining;
Wang, Dongfang;
Zeng, Jianyang;
Jiang, Tao

Publication type:

Article

Partial bisulfite conversion for unique template sequencing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx1054

By:

Kumar, Vijay;
Rosenbaum, Julie;
Wang, Zihua;
Forcier, Talitha;
Ronemus, Michael;
Wigler, Michael;
Levy, Dan

Publication type:

Article

Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx1053

By:

Martins, André L;
Walavalkar, Ninad M;
Anderson, Warren D;
Zang, Chongzhi;
Guertin, Michael J

Publication type:

Article

Dynamic reorganization of open chromatin underlies diverse transcriptomes during spermatogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 593, doi. 10.1093/nar/gkx1052

By:

Maezawa, So;
Yukawa, Masashi;
Alavattam, Kris G;
Barski, Artem;
Namekawa, Satoshi H

Publication type:

Article

Fluorescently-tagged human eIF3 for single-molecule spectroscopy.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx1050

By:

Johnson, Alex G;
Petrov, Alexey N;
Fuchs, Gabriele;
Majzoub, Karim;
Grosely, Rosslyn;
Choi, Junhong;
Puglisi, Joseph D

Publication type:

Article

Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 2, p. 1, doi. 10.1093/nar/gkx874

By:

Cui, Yi;
Hu, Dehong;
Markillie, Lye Meng;
Chrisler, William B;
Gaffrey, Matthew J;
Ansong, Charles;
Sussel, Lori;
Orr, Galya

Publication type:

Article