Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 19

Results: 54

A Type III-B Cmr effector complex catalyzes the synthesis of cyclic oligoadenylate second messengers by cooperative substrate binding.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10319, doi. 10.1093/nar/gky844

By:

Han, Wenyuan;
Stella, Stefano;
Zhang, Yan;
Guo, Tong;
Sulek, Karolina;
Peng-Lundgren, Li;
Montoya, Guillermo;
She, Qunxin

Publication type:

Article

Vibrio cholerae chromosome 2 copy number is controlled by the methylation-independent binding of its monomeric initiator to the chromosome 1 crtS site.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10145, doi. 10.1093/nar/gky790

By:

de Lemos Martins, Francisco;
Fournes, Florian;
Mazzuoli, Maria-Vittoria;
Mazel, Didier;
Val, Marie-Eve

Publication type:

Article

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10532, doi. 10.1093/nar/gky849

By:

Wu, Xia;
Kabalane, Hadi;
Kahli, Malik;
Petryk, Nataliya;
Laperrousaz, Bastien;
Jaszczyszyn, Yan;
Drillon, Guenola;
Nicolini, Frank-Emmanuel;
Perot, Gaëlle;
Robert, Aude

Publication type:

Article

Sequence preference and structural heterogeneity of BZ junctions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10504, doi. 10.1093/nar/gky784

By:

Kim, Doyoun;
Hur, Jeonghwan;
Han, Ji Hoon;
Ha, Sung Chul;
Shin, Donghyuk;
Lee, Sangho;
Park, Soyoung;
Sugiyama, Hiroshi;
Kim, Kyeong Kyu

Publication type:

Article

Crystal structure of the modification-dependent SRA-HNH endonuclease TagI.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10489, doi. 10.1093/nar/gky781

By:

Kisiala, Marlena;
Copelas, Alyssa;
Czapinska, Honorata;
Xu, Shuang-yong;
Bochtler, Matthias

Publication type:

Article

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10157, doi. 10.1093/nar/gky797

By:

Wu, Xia;
Kabalane, Hadi;
Kahli, Malik;
Petryk, Nataliya;
Laperrousaz, Bastien;
Jaszczyszyn, Yan;
Drillon, Guenola;
Nicolini, Frank-Emmanuel;
Perot, Gaëlle;
Robert, Aude

Publication type:

Article

Unexpected functional versatility of the pentatricopeptide repeat proteins PGR3, PPR5 and PPR10.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10448, doi. 10.1093/nar/gky737

By:

Rojas, Margarita;
Ruwe, Hannes;
Miranda, Rafael G;
Zoschke, Reimo;
Hase, Nora;
Schmitz-Linneweber, Christian;
Barkan, Alice

Publication type:

Article

Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9971, doi. 10.1093/nar/gky725

By:

Slager, Jelle;
Aprianto, Rieza;
Veening, Jan-Willem

Publication type:

Article

Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10095, doi. 10.1093/nar/gky713

By:

Gopalan, Sneha;
Gibbon, Dana M;
Banks, Charles AS;
Zhang, Ying;
Florens, Laurence A;
Washburn, Michael P;
Dabas, Preeti;
Sharma, Nimisha;
Seidel, Christopher W;
Conaway, Ronald C

Publication type:

Article

ZBTB24 is a transcriptional regulator that coordinates with DNMT3B to control DNA methylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10034, doi. 10.1093/nar/gky682

By:

Thompson, Joyce J;
Kaur, Rupinder;
Sosa, Carlos P;
Lee, Jeong-Heon;
Kashiwagi, Katsunobu;
Zhou, Dan;
Robertson, Keith D

Publication type:

Article

Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9895, doi. 10.1093/nar/gky763

By:

Cook, Peter R;
Marenduzzo, Davide

Publication type:

Article

A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10216, doi. 10.1093/nar/gky826

By:

Gulvady, Ranjit;
Gao, Yunfeng;
Kenney, Linda J;
Yan, Jie

Publication type:

Article

CRISPR–Cas adaptation in Escherichia coli requires RecBCD helicase but not nuclease activity, is independent of homologous recombination, and is antagonized by 5′ ssDNA exonucleases.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10173, doi. 10.1093/nar/gky799

By:

Radovčić, Marin;
Killelea, Tom;
Savitskaya, Ekaterina;
Wettstein, Lukas;
Bolt, Edward L;
Ivančić-Baće, Ivana

Publication type:

Article

More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. e115, doi. 10.1093/nar/gky607

By:

Zuffo, Michela;
Guédin, Aurore;
Leriche, Emma-Dune;
Doria, Filippo;
Pirota, Valentina;
Gabelica, Valérie;
Mergny, Jean-Louis;
Freccero, Mauro

Publication type:

Article

T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10474, doi. 10.1093/nar/gky776

By:

Shi, Ke;
Bohl, Thomas E;
Park, Jeonghyun;
Zasada, Andrew;
Malik, Shray;
Banerjee, Surajit;
Tran, Vincent;
Li, Na;
Yin, Zhiqi;
Kurniawan, Fredy

Publication type:

Article

Systematic exploration of cell morphological phenotypes associated with a transcriptomic query.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. e116, doi. 10.1093/nar/gky626

By:

Nassiri, Isar;
McCall, Matthew N

Publication type:

Article

Systematic editing of synthetic RIG-I ligands to produce effective antiviral and anti-tumor RNA immunotherapies.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10533, doi. 10.1093/nar/gky819

By:

Lee, Janghyun;
Park, Eun-Byeol;
Min, Jiyoun;
Sung, Si-Eun;
Jang, Yejin;
Shin, Jin Soo;
Chun, Dongmin;
Kim, Ki-Hun;
Hwang, Jihyun;
Lee, Mi-Kyung

Publication type:

Article

Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10286, doi. 10.1093/nar/gky838

By:

Hickman, Alison B;
Voth, Andrea Regier;
Ewis, Hosam;
Li, Xianghong;
Craig, Nancy L;
Dyda, Fred

Publication type:

Article

Structural characterization of maternally expressed gene 3 RNA reveals conserved motifs and potential sites of interaction with polycomb repressive complex 2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10432, doi. 10.1093/nar/gky722

By:

Sherpa, Chringma;
Rausch, Jason W;
Le Grice, Stuart FJ

Publication type:

Article

Structural basis of chimpanzee APOBEC3H dimerization stabilized by double-stranded RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10368, doi. 10.1093/nar/gky676

By:

Matsuoka, Tatsuya;
Nagae, Takayuki;
Ode, Hirotaka;
Awazu, Hiroaki;
Kurosawa, Teppei;
Hamano, Akiko;
Matsuoka, Kazuhiro;
Hachiya, Atsuko;
Imahashi, Mayumi;
Yokomaku, Yoshiyuki

Publication type:

Article

Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10331, doi. 10.1093/nar/gky664

By:

Joshi, Kartikeya;
Bhatt, Monika J;
Farabaugh, Philip J

Publication type:

Article

Structural analysis of the ternary complex between lamin A/C, BAF and emerin identifies an interface disrupted in autosomal recessive progeroid diseases.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10460, doi. 10.1093/nar/gky736

By:

Samson, Camille;
Petitalot, Ambre;
Celli, Florian;
Herrada, Isaline;
Ropars, Virginie;
Le Du, Marie-Hélène;
Nhiri, Naïma;
Jacquet, Eric;
Arteni, Ana-Andrea;
Buendia, Brigitte

Publication type:

Article

Site-specific amino acid substitution in dodecameric peptides determines the stability and unfolding of c-MYC quadruplex promoting apoptosis in cancer cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9932, doi. 10.1093/nar/gky824

By:

Sengupta, Pallabi;
Banerjee, Nilanjan;
Roychowdhury, Tanaya;
Dutta, Anindya;
Chattopadhyay, Samit;
Chatterjee, Subhrangsu

Publication type:

Article

COPII vesicles can affect the activity of antisense oligonucleotides by facilitating the release of oligonucleotides from endocytic pathways.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10225, doi. 10.1093/nar/gky841

By:

Liang, Xue-hai;
Sun, Hong;
Nichols, Joshua G;
Allen, Nickolas;
Wang, Shiyu;
Vickers, Timothy A;
Shen, Wen;
Hsu, Chih-Wei;
Crooke, Stanley T

Publication type:

Article

Role of nucleotide identity in effective CRISPR target escape mutations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10395, doi. 10.1093/nar/gky687

By:

Künne, Tim;
Zhu, Yifan;
da Silva, Fausia;
Konstantinides, Nico;
McKenzie, Rebecca E;
Jackson, Ryan N;
Brouns, Stan JJ

Publication type:

Article

RGG-box in hnRNPA1 specifically recognizes the telomere G-quadruplex DNA and enhances the G-quadruplex unfolding ability of UP1 domain.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10246, doi. 10.1093/nar/gky854

By:

Ghosh, Meenakshi;
Singh, Mahavir

Publication type:

Article

Robustness by intrinsically disordered C-termini and translational readthrough.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10184, doi. 10.1093/nar/gky778

By:

Kleppe, April Snofrid;
Bornberg-Bauer, Erich

Publication type:

Article

Mb- and FnCpf1 nucleases are active in mammalian cells: activities and PAM preferences of four wild-type Cpf1 nucleases and of their altered PAM specificity variants.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10272, doi. 10.1093/nar/gky815

By:

Tóth, Eszter;
Czene, Bernadett C;
Kulcsár, Péter I;
Krausz, Sarah L;
Tálas, András;
Nyeste, Antal;
Varga, Éva;
Huszár, Krisztina;
Weinhardt, Nóra;
Ligeti, Zoltán

Publication type:

Article

RbpA relaxes promoter selectivity of M. tuberculosis RNA polymerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10106, doi. 10.1093/nar/gky714

By:

Sudalaiyadum Perumal, Ayyappasamy;
Vishwakarma, Rishi Kishore;
Hu, Yangbo;
Morichaud, Zakia;
Brodolin, Konstantin

Publication type:

Article

Rapid high-resolution measurement of DNA replication timing by droplet digital PCR.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. e112, doi. 10.1093/nar/gky590

By:

Batrakou, Dzmitry G;
Heron, Emma D;
Nieduszynski, Conrad A

Publication type:

Article

A phosphate-targeted dinuclear Cu(II) complex combining major groove binding and oxidative DNA cleavage.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9918, doi. 10.1093/nar/gky806

By:

Molphy, Zara;
Montagner, Diego;
Bhat, Satish S;
Slator, Creina;
Long, Conor;
Erxleben, Andrea;
Kellett, Andrew

Publication type:

Article

Pancreatic β-cell tRNA hypomethylation and fragmentation link TRMT10A deficiency with diabetes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10302, doi. 10.1093/nar/gky839

By:

Cosentino, Cristina;
Toivonen, Sanna;
Diaz Villamil, Esteban;
Atta, Mohamed;
Ravanat, Jean-Luc;
Demine, Stéphane;
Schiavo, Andrea Alex;
Pachera, Nathalie;
Deglasse, Jean-Philippe;
Jonas, Jean-Christophe

Publication type:

Article

The OB-fold proteins of the Trypanosoma brucei editosome execute RNA-chaperone activity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10353, doi. 10.1093/nar/gky668

By:

Voigt, Christin;
Dobrychłop, Mateusz;
Kruse, Elisabeth;
Czerwoniec, Anna;
Kasprzak, Joanna M;
Bytner, Patrycja;
Campo, Cristian Del;
Leeder, W-Matthias;
Bujnicki, Janusz M;
Göringer, H Ulrich

Publication type:

Article

Nucleolar residence of the seckel syndrome protein TRAIP is coupled to ribosomal DNA transcription.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10119, doi. 10.1093/nar/gky775

By:

Chen, Yangzi;
Li, Junshi;
Cao, Fakun;
Lam, Jason;
Cheng, Clooney CY;
Yu, Cheng-han;
Huen, Michael SY

Publication type:

Article

Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9960, doi. 10.1093/nar/gky833

By:

Kulik, Marta;
Mori, Takaharu;
Sugita, Yuji;
Trylska, Joanna

Publication type:

Article

MIR100 host gene-encoded lncRNAs regulate cell cycle by modulating the interaction between HuR and its target mRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10405, doi. 10.1093/nar/gky696

By:

Sun, Qinyu;
Tripathi, Vidisha;
Yoon, Je-Hyun;
Singh, Deepak K;
Hao, Qinyu;
Min, Kyung-Won;
Davila, Sylvia;
Zealy, Richard W;
Li, Xiao Ling;
Polycarpou-Schwarz, Maria

Publication type:

Article

MetClo: methylase-assisted hierarchical DNA assembly using a single type IIS restriction enzyme.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. e113, doi. 10.1093/nar/gky596

By:

Lin, Da;
O'Callaghan, Christopher A

Publication type:

Article

Identification of clustered organellar short (cos) RNAs and of a conserved family of organellar RNA-binding proteins, the heptatricopeptide repeat proteins, in the malaria parasite.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10417, doi. 10.1093/nar/gky710

By:

Hillebrand, Arne;
Matz, Joachim M;
Almendinger, Martin;
Müller, Katja;
Matuschewski, Kai;
Schmitz-Linneweber, Christian

Publication type:

Article

Mechanistic insights into histone deposition and nucleosome assembly by the chromatin assembly factor-1.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9907, doi. 10.1093/nar/gky823

By:

Sauer, Paul V;
Gu, Yajie;
Liu, Wallace H;
Mattiroli, Francesca;
Panne, Daniel;
Luger, Karolin;
Churchill, Mair EA

Publication type:

Article

Misfolding of a DNAzyme for ultrahigh sodium selectivity over potassium.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10262, doi. 10.1093/nar/gky807

By:

He, Yanping;
Chen, Da;
Huang, Po-Jung Jimmy;
Zhou, Yibo;
Ma, Lingzi;
Xu, Kexin;
Yang, Ronghua;
Liu, Juewen

Publication type:

Article

The interplay between the Argonaute proteins Piwi and Aub within Drosophila germarium is critical for oogenesis, piRNA biogenesis and TE silencing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10052, doi. 10.1093/nar/gky695

By:

Théron, Emmanuelle;
Maupetit-Mehouas, Stéphanie;
Pouchin, Pierre;
Baudet, Laura;
Brasset, Emilie;
Vaury, Chantal

Publication type:

Article

In vivo cleavage rules and target repertoire of RNase III in Escherichia coli.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10530, doi. 10.1093/nar/gky816

By:

Altuvia, Yael;
Bar, Amir;
Reiss, Niv;
Karavani, Ehud;
Argaman, Liron;
Margalit, Hanah

Publication type:

Article

Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10007, doi. 10.1093/nar/gky661

By:

Arimura, Yasuhiro;
Ikura, Masae;
Fujita, Risa;
Noda, Mamiko;
Kobayashi, Wataru;
Horikoshi, Naoki;
Sun, Jiying;
Shi, Lin;
Kusakabe, Masayuki;
Harata, Masahiko

Publication type:

Article

A limited number of double-strand DNA breaks is sufficient to delay cell cycle progression.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10132, doi. 10.1093/nar/gky786

By:

van den Berg, Jeroen;
G. Manjón, Anna;
Kielbassa, Karoline;
Feringa, Femke M;
Freire, Raimundo;
Medema, René H

Publication type:

Article

How bacterial xenogeneic silencer rok distinguishes foreign from self DNA in its resident genome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10514, doi. 10.1093/nar/gky836

By:

Duan, Bo;
Ding, Pengfei;
Hughes, Timothy R;
Navarre, William Wiley;
Liu, Jun;
Xia, Bin

Publication type:

Article

High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9990, doi. 10.1093/nar/gky750

By:

Aprianto, Rieza;
Slager, Jelle;
Holsappel, Siger;
Veening, Jan-Willem

Publication type:

Article

Displacement of the transcription factor B reader domain during transcription initiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10066, doi. 10.1093/nar/gky699

By:

Dexl, Stefan;
Reichelt, Robert;
Kraatz, Katharina;
Schulz, Sarah;
Grohmann, Dina;
Bartlett, Michael;
Thomm, Michael

Publication type:

Article

Alternative polyadenylation confers Pten mRNAs stability and resistance to microRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10340, doi. 10.1093/nar/gky666

By:

Thivierge, Caroline;
Tseng, Hsin-Wei;
Mayya, Vinay K;
Lussier, Carine;
Gravel, Simon-Pierre;
Duchaine, Thomas F

Publication type:

Article

DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. e114, doi. 10.1093/nar/gky602

By:

Catoni, Marco;
Tsang, Jonathan MF;
Greco, Alessandro P;
Zabet, Nicolae Radu

Publication type:

Article

Highly efficient genome editing via CRISPR–Cas9 in human pluripotent stem cells is achieved by transient BCL-XL overexpression.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 10195, doi. 10.1093/nar/gky804

By:

Li, Xiao-Lan;
Li, Guo-Hua;
Fu, Juan;
Fu, Ya-Wen;
Zhang, Lu;
Chen, Wanqiu;
Arakaki, Cameron;
Zhang, Jian-Ping;
Wen, Wei;
Zhao, Mei

Publication type:

Article