Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 17

Results: 52

The trimeric Hef-associated nuclease HAN is a 3′→5′ exonuclease and is probably involved in DNA repair.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9027, doi. 10.1093/nar/gky707

By:

Feng, Lei;
Chang, Chen-Chen;
Song, Dong;
Jiang, Chuang;
Song, Yang;
Wang, Chao-Fan;
Deng, Wei;
Zou, Ya-Juan;
Chen, Hai-Feng;
Xiao, Xiang

Publication type:

Article

TraN: A novel repressor of an Enterococcus conjugative type IV secretion system.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9201, doi. 10.1093/nar/gky671

By:

Kohler, Verena;
Goessweiner-Mohr, Nikolaus;
Aufschnaiter, Andreas;
Fercher, Christian;
Probst, Ines;
Pavkov-Keller, Tea;
Hunger, Kristin;
Wolinski, Heimo;
Büttner, Sabrina;
Grohmann, Elisabeth

Publication type:

Article

VpsR and cyclic di-GMP together drive transcription initiation to activate biofilm formation in Vibrio cholerae.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8876, doi. 10.1093/nar/gky606

By:

Hsieh, Meng-Lun;
Hinton, Deborah M;
Waters, Christopher M

Publication type:

Article

Two convergent pathways of DNA knotting in replicating DNA molecules as revealed by θ-curve analysis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9181, doi. 10.1093/nar/gky559

By:

O'Donnol, Danielle;
Stasiak, Andrzej;
Buck, Dorothy

Publication type:

Article

Tunable order–disorder continuum in protein–DNA interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8700, doi. 10.1093/nar/gky732

By:

Munshi, Sneha;
Gopi, Soundhararajan;
Asampille, Gitanjali;
Subramanian, Sandhyaa;
Campos, Luis A;
Atreya, Hanudatta S;
Naganathan, Athi N

Publication type:

Article

The Xenopus animal cap transcriptome: building a mucociliary epithelium.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8772, doi. 10.1093/nar/gky771

By:

Angerilli, Alessandro;
Smialowski, Pawel;
Rupp, Ralph AW

Publication type:

Article

Three classes of response elements for human PRC2 and MLL1/2–Trithorax complexes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8848, doi. 10.1093/nar/gky595

By:

Du, Junqing;
Kirk, Brian;
Zeng, Jia;
Ma, Jianpeng;
Wang, Qinghua

Publication type:

Article

TGIF1 homeodomain interacts with Smad MH1 domain and represses TGF-β signaling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9220, doi. 10.1093/nar/gky680

By:

Guca, Ewelina;
Suñol, David;
Ruiz, Lidia;
Konkol, Agnieszka;
Cordero, Jorge;
Torner, Carles;
Aragon, Eric;
Martin-Malpartida, Pau;
Riera, Antoni;
Macias, Maria J

Publication type:

Article

TDP1 suppresses mis-joining of radiomimetic DNA double-strand breaks and cooperates with Artemis to promote optimal nonhomologous end joining.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8926, doi. 10.1093/nar/gky694

By:

Kawale, Ajinkya S;
Akopiants, Konstantin;
Valerie, Kristoffer;
Ruis, Brian;
Hendrickson, Eric A;
Huang, Shar-yin N;
Pommier, Yves;
Povirk, Lawrence F

Publication type:

Article

The suppressive cap-binding complex factor 4EIP is required for normal differentiation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8993, doi. 10.1093/nar/gky733

By:

Terrao, Monica;
Marucha, Kevin K;
Mugo, Elisha;
Droll, Dorothea;
Minia, Igor;
Egler, Franziska;
Braun, Johanna;
Clayton, Christine

Publication type:

Article

Structure-specific endonuclease activity of SNM1A enables processing of a DNA interstrand crosslink.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9057, doi. 10.1093/nar/gky759

By:

Buzon, Beverlee;
Grainger, Ryan;
Huang, Simon;
Rzadki, Cameron;
Junop, Murray S

Publication type:

Article

Structural optimization of pseudorotaxane-forming oligonucleotides for efficient and stable complex formation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8710, doi. 10.1093/nar/gky744

By:

Onizuka, Kazumitsu;
Miyashita, Takuya;
Chikuni, Tomoko;
Ozawa, Mamiko;
Abe, Hiroshi;
Nagatsugi, Fumi

Publication type:

Article

Structural dynamics of propeller loop: towards folding of RNA G-quadruplex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8754, doi. 10.1093/nar/gky712

By:

Havrila, Marek;
Stadlbauer, Petr;
Kührová, Petra;
Banáš, Pavel;
Mergny, Jean-Louis;
Otyepka, Michal;
Šponer, Jiří

Publication type:

Article

SOX9 has distinct regulatory roles in alternative splicing and transcription.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9106, doi. 10.1093/nar/gky553

By:

Girardot, Michael;
Bayet, Elsa;
Maurin, Justine;
Fort, Philippe;
Roux, Pierre;
Raynaud, Peggy

Publication type:

Article

Small but large enough: structural properties of armless mitochondrial tRNAs from the nematode Romanomermis culicivorax.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9170, doi. 10.1093/nar/gky593

By:

Jühling, Tina;
Duchardt-Ferner, Elke;
Bonin, Sonja;
Wöhnert, Jens;
Pütz, Joern;
Florentz, Catherine;
Betat, Heike;
Sauter, Claude;
Mörl, Mario

Publication type:

Article

SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9148, doi. 10.1093/nar/gky591

By:

Li, Shengjun;
Xu, Ran;
Li, Aixia;
Liu, Kan;
Gu, Liqing;
Li, Mu;
Zhang, Hairui;
Zhang, Yueying;
Zhuang, Shangshang;
Wang, Quanhui

Publication type:

Article

PARP10 promotes cellular proliferation and tumorigenesis by alleviating replication stress.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8908, doi. 10.1093/nar/gky658

By:

Schleicher, Emily M;
Galvan, Adri M;
Imamura-Kawasawa, Yuka;
Moldovan, George-Lucian;
Nicolae, Claudia M

Publication type:

Article

qEva-CRISPR: a method for quantitative evaluation of CRISPR/Cas-mediated genome editing in target and off-target sites.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. e101, doi. 10.1093/nar/gky505

By:

Dabrowska, Magdalena;
Czubak, Karol;
Juzwa, Wojciech;
Krzyzosiak, Wlodzimierz J;
Olejniczak, Marta;
Kozlowski, Piotr

Publication type:

Article

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8953, doi. 10.1093/nar/gky726

By:

Schmid, Michael;
Frei, Daniel;
Patrignani, Andrea;
Schlapbach, Ralph;
Frey, Jürg E;
Remus-Emsermann, Mitja N P;
Ahrens, Christian H

Publication type:

Article

Protein encoded in human telomerase RNA is involved in cell protective pathways.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8966, doi. 10.1093/nar/gky705

By:

Rubtsova, Maria;
Naraykina, Yulia;
Vasilkova, Daria;
Meerson, Mark;
Zvereva, Maria;
Prassolov, Vladimir;
Lazarev, Vasily;
Manuvera, Valentin;
Kovalchuk, Sergey;
Anikanov, Nickolay

Publication type:

Article

Polymorphism of G4 associates: from stacks to wires via interlocks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8978, doi. 10.1093/nar/gky729

By:

Varizhuk, Anna M;
Protopopova, Anna D;
Tsvetkov, Vladimir B;
Barinov, Nikolay A;
Podgorsky, Victor V;
Tankevich, Maria V;
Vlasenok, Maria A;
Severov, Vyacheslav V;
Smirnov, Igor P;
Dubrovin, Evgeniy V

Publication type:

Article

Replication-dependent histone isoforms: a new source of complexity in chromatin structure and function.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8665, doi. 10.1093/nar/gky768

By:

Singh, Rajbir;
Bassett, Emily;
Chakravarti, Arnab;
Parthun, Mark R

Publication type:

Article

PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8730, doi. 10.1093/nar/gky609

By:

Thody, Joshua;
Folkes, Leighton;
Medina-Calzada, Zahara;
Xu, Ping;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. e102, doi. 10.1093/nar/gky512

By:

Prykhozhij, Sergey V;
Fuller, Charlotte;
Steele, Shelby L;
Veinotte, Chansey J;
Razaghi, Babak;
Robitaille, Johane M;
McMaster, Christopher R;
Shlien, Adam;
Malkin, David;
Berman, Jason N

Publication type:

Article

Nucleosome conformational variability in solution and in interphase nuclei evidenced by cryo-electron microscopy of vitreous sections.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9189, doi. 10.1093/nar/gky670

By:

Eltsov, Mikhail;
Grewe, Diana;
Lemercier, Nicolas;
Frangakis, Achilleas;
Livolant, Françoise;
Leforestier, Amélie

Publication type:

Article

Modification of the aminopyridine unit of 2′-deoxyaminopyridinyl-pseudocytidine allowing triplex formation at CG interruptions in homopurine sequences.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8679, doi. 10.1093/nar/gky704

By:

Wang, Lei;
Taniguchi, Yosuke;
Okamura, Hidenori;
Sasaki, Shigeki

Publication type:

Article

A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9067, doi. 10.1093/nar/gky760

By:

Bower, Edward K M;
Cooper, Laurie P;
Roberts, Gareth A;
White, John H;
Luyten, Yvette;
Morgan, Richard D;
Dryden, David T F

Publication type:

Article

MBNL splicing activity depends on RNA binding site structural context.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9119, doi. 10.1093/nar/gky565

By:

Taylor, Katarzyna;
Sznajder, Łukasz J;
Cywoniuk, Piotr;
Thomas, James D;
Swanson, Maurice S;
Sobczak, Krzysztof

Publication type:

Article

Loss of tumor suppressor IGFBP4 drives epigenetic reprogramming in hepatic carcinogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8832, doi. 10.1093/nar/gky589

By:

Lee, Ying-Ying;
Mok, Myth TS;
Kang, Wei;
Yang, Weiqin;
Tang, Wenshu;
Wu, Feng;
Xu, Liangliang;
Yan, Mingfei;
Yu, Zhuo;
Lee, Sau-Dan

Publication type:

Article

Loss of E2F7 confers resistance to poly-ADP-ribose polymerase (PARP) inhibitors in BRCA2-deficient cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8898, doi. 10.1093/nar/gky657

By:

Clements, Kristen E;
Thakar, Tanay;
Nicolae, Claudia M;
Liang, Xinwen;
Wang, Hong-Gang;
Moldovan, George-Lucian

Publication type:

Article

LGP2 virus sensor regulates gene expression network mediated by TRBP-bound microRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9134, doi. 10.1093/nar/gky575

By:

Takahashi, Tomoko;
Nakano, Yuko;
Onomoto, Koji;
Murakami, Fuminori;
Komori, Chiaki;
Suzuki, Yutaka;
Yoneyama, Mitsutoshi;
Ui-Tei, Kumiko

Publication type:

Article

KAP1 facilitates reinstatement of heterochromatin after DNA replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8788, doi. 10.1093/nar/gky580

By:

Jang, Suk Min;
Kauzlaric, Annamaria;
Quivy, Jean-Pierre;
Pontis, Julien;
Rauwel, Benjamin;
Coluccio, Andrea;
Offner, Sandra;
Duc, Julien;
Turelli, Priscilla;
Almouzni, Geneviève

Publication type:

Article

INFERNO: inferring the molecular mechanisms of noncoding genetic variants.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8740, doi. 10.1093/nar/gky686

By:

Amlie-Wolf, Alexandre;
Tang, Mitchell;
Mlynarski, Elisabeth E;
Kuksa, Pavel P;
Valladares, Otto;
Katanic, Zivadin;
Tsuang, Debby;
Brown, Christopher D;
Schellenberg, Gerard D;
Wang, Li-San

Publication type:

Article

Identification of transcribed protein coding sequence remnants within lincRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8720, doi. 10.1093/nar/gky608

By:

Talyan, Sweta;
Andrade-Navarro, Miguel A;
Muro, Enrique M

Publication type:

Article

Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9160, doi. 10.1093/nar/gky592

By:

Ryu, Huijeong;
Grove, Tyler L;
Almo, Steven C;
Kim, Jungwook

Publication type:

Article

Highly efficient RNAi and Cas9-based auto-cloning systems for C. elegans research.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. e105, doi. 10.1093/nar/gky516

By:

Sturm, Ádám;
Saskői, Éva;
Tibor, Kovács;
Weinhardt, Nóra;
Vellai, Tibor

Publication type:

Article

H2A.Z.1 crosstalk with H3K56-acetylation controls gliogenesis through the transcription of folate receptor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8817, doi. 10.1093/nar/gky585

By:

Su, Libo;
Xia, Wenlong;
Shen, Tianjin;
Liang, Qingli;
Wang, Wenwen;
Li, Hong;
Jiao, Jianwei

Publication type:

Article

Genome wide analyses uncover allele-specific RNA editing in human and mouse.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8888, doi. 10.1093/nar/gky613

By:

Zhou, Zhong-Yin;
Hu, Yue;
Li, Aimin;
Li, Ying-Ju;
Zhao, Hui;
Wang, Si-Qi;
Otecko, Newton O;
Zhang, Dejiu;
Wang, Jin-Huan;
Liu, Yajun

Publication type:

Article

A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9094, doi. 10.1093/nar/gky539

By:

Polaski, Jacob T;
Kletzien, Otto A;
Drogalis, Lea K;
Batey, Robert T

Publication type:

Article

Fission yeast telosomes: non-canonical histone-containing chromatin structures dependent on shelterin and RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8865, doi. 10.1093/nar/gky605

By:

Greenwood, Jessica;
Patel, Harshil;
Cech, Thomas R;
Cooper, Julia Promisel

Publication type:

Article

A DNA-sensing–independent role of a nuclear RNA helicase, DHX9, in stimulation of NF-κB–mediated innate immunity against DNA virus infection.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9011, doi. 10.1093/nar/gky742

By:

Ng, Yee Ching;
Chung, Woo-Chang;
Kang, Hye-Ri;
Cho, Hye-Jeong;
Park, Eun-Byeol;
Kang, Suk-Jo;
Song, Moon Jung

Publication type:

Article

Directed evolution of Escherichia coli with lower-than-natural plasmid mutation rates.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9236, doi. 10.1093/nar/gky751

By:

Deatherage, Daniel E;
Leon, Dacia;
Rodriguez, Álvaro E;
Omar, Salma K;
Barrick, Jeffrey E

Publication type:

Article

Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9081, doi. 10.1093/nar/gky495

By:

Tosar, Juan Pablo;
Gámbaro, Fabiana;
Darré, Leonardo;
Pantano, Sergio;
Westhof, Eric;
Cayota, Alfonso

Publication type:

Article

The deoxyribose phosphate lyase of DNA polymerase β suppresses a processive DNA synthesis to prevent trinucleotide repeat instability.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8940, doi. 10.1093/nar/gky700

By:

Lai, Yanhao;
Weizmann, Yossi;
Liu, Yuan

Publication type:

Article

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. e100, doi. 10.1093/nar/gky501

By:

Tasan, Ipek;
Sustackova, Gabriela;
Zhang, Liguo;
Kim, Jiah;
Sivaguru, Mayandi;
HamediRad, Mohammad;
Wang, Yuchuan;
Genova, Justin;
Ma, Jian;
Belmont, Andrew S

Publication type:

Article

The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8803, doi. 10.1093/nar/gky584

By:

Rochat, Tatiana;
Bohn, Chantal;
Morvan, Claire;
Le Lam, Thao Nguyen;
Razvi, Fareha;
Pain, Adrien;
Toffano-Nioche, Claire;
Ponien, Prishila;
Jacq, Annick;
Jacquet, Eric

Publication type:

Article

Chromatin-dependent allosteric regulation of DNMT3A activity by MeCP2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9044, doi. 10.1093/nar/gky715

By:

Rajavelu, Arumugam;
Lungu, Cristiana;
Emperle, Max;
Dukatz, Michael;
Bröhm, Alexander;
Broche, Julian;
Hanelt, Ines;
Parsa, Edris;
Schiffers, Sarah;
Karnik, Rahul

Publication type:

Article

Chemical genetic inhibition of DEAD-box proteins using covalent complementarity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 8689, doi. 10.1093/nar/gky706

By:

Barkovich, Krister J;
Moore, Megan K;
Hu, Qi;
Shokat, Kevan M

Publication type:

Article

Bio-TDS: bioscience query tool discovery system.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. 9251, doi. 10.1093/nar/gky564

By:

Gnimpieba, Etienne Z;
VanDiermen, Menno S;
Gustafson, Shayla M;
Conn, Bill;
Lushbough, Carol M

Publication type:

Article

Animal Hen1 2′-O-methyltransferases as tools for 3′-terminal functionalization and labelling of single-stranded RNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 17, p. e104, doi. 10.1093/nar/gky514

By:

Mickutė, Milda;
Nainytė, Milda;
Vasiliauskaitė, Lina;
Plotnikova, Alexandra;
Masevičius, Viktoras;
Klimašauskas, Saulius;
Vilkaitis, Giedrius

Publication type:

Article