Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 14

Results: 49

Transmission of dynamic supercoiling in linear and multi-way branched DNAs and its regulation revealed by a fluorescent G-quadruplex torsion sensor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7418, doi. 10.1093/nar/gky534

By:

Xia, Ye;
Zheng, Ke-wei;
He, Yi-de;
Liu, Hong-he;
Wen, Cui-jiao;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Translational regulation in mycobacteria and its implications for pathogenicity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6950, doi. 10.1093/nar/gky574

By:

Sawyer, Elizabeth B;
Grabowska, Anna D;
Cortes, Teresa

Publication type:

Article

Transitions in DNA polymerase β μs-ms dynamics related to substrate binding and catalysis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7309, doi. 10.1093/nar/gky503

By:

DeRose, Eugene F;
Kirby, Thomas W;
Mueller, Geoffrey A;
Beard, William A;
Wilson, Samuel H;
London, Robert E

Publication type:

Article

A transcriptional factor B paralog functions as an activator to DNA damage-responsive expression in archaea.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7085, doi. 10.1093/nar/gky236

By:

Feng, Xu;
Sun, Mengmeng;
Han, Wenyuan;
Liang, Yun Xiang;
She, Qunxin

Publication type:

Article

Tissue-specific DNA methylation loss during ageing and carcinogenesis is linked to chromosome structure, replication timing and cell division rates.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7022, doi. 10.1093/nar/gky498

By:

Dmitrijeva, Marija;
Ossowski, Stephan;
Serrano, Luis;
Schaefer, Martin H

Publication type:

Article

Tissue-selective restriction of RNA editing of CaV1.3 by splicing factor SRSF9.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7323, doi. 10.1093/nar/gky348

By:

Huang, Hua;
Kapeli, Katannya;
Jin, Wenhao;
Wong, Yuk Peng;
Arumugam, Thiruma Valavan;
Koh, Joanne Huifen;
Srimasorn, Sumitra;
Mallilankaraman, Karthik;
Chua, John Jia En;
Yeo, Gene W

Publication type:

Article

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7425, doi. 10.1093/nar/gky547

By:

Rozov, Alexey;
Wolff, Philippe;
Grosjean, Henri;
Yusupov, Marat;
Yusupova, Gulnara;
Westhof, Eric

Publication type:

Article

SRSF9 selectively represses ADAR2-mediated editing of brain-specific sites in primates.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7379, doi. 10.1093/nar/gky615

By:

Shanmugam, Raghuvaran;
Zhang, Fan;
Srinivasan, Harini;
Charles Richard, John Lalith;
Liu, Kaiwen I;
Zhang, Xiujun;
Woo, Cheok Wei A;
Chua, Zi Hao M;
Buschdorf, Jan Paul;
Meaney, Michael J

Publication type:

Article

Solid phase chemistry to covalently and reversibly capture thiolated RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6996, doi. 10.1093/nar/gky556

By:

Duffy, Erin E;
Canzio, Daniele;
Maniatis, Tom;
Simon, Matthew D

Publication type:

Article

SHAPE probing pictures Mg2+-dependent folding of small self-cleaving ribozymes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6983, doi. 10.1093/nar/gky555

By:

Gasser, Catherina;
Gebetsberger, Jennifer;
Gebetsberger, Manuel;
Micura, Ronald

Publication type:

Article

Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH).

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e87, doi. 10.1093/nar/gky411

By:

Gabrieli, Tslil;
Sharim, Hila;
Fridman, Dena;
Arbib, Nissim;
Michaeli, Yael;
Ebenstein, Yuval

Publication type:

Article

The role of spacer sequence in modulating turn-on fluorescence of DNA-templated silver nanoclusters.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6974, doi. 10.1093/nar/gky521

By:

Ang, Yan Shan;
Woon, Wei Wen Elvin;
Yung, Lin-Yue Lanry

Publication type:

Article

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7284, doi. 10.1093/nar/gky482

By:

Duchi, Diego;
Mazumder, Abhishek;
Malinen, Anssi M;
Ebright, Richard H;
Kapanidis, Achillefs N

Publication type:

Article

Revealing the distinct folding phases of an RNA three-helix junction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7354, doi. 10.1093/nar/gky363

By:

Plumridge, Alex;
Katz, Andrea M;
Calvey, George D;
Elber, Ron;
Kirmizialtin, Serdal;
Pollack, Lois

Publication type:

Article

Regulation of miR-34b/c-targeted gene expression program by SUMOylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7108, doi. 10.1093/nar/gky484

By:

Li, Yi-Jia;
Du, Li;
Aldana-Masangkay, Grace;
Wang, Xiuli;
Urak, Ryan;
Forman, Stephen J;
Rosen, Steven T;
Chen, Yuan

Publication type:

Article

The PXDLS linear motif regulates circadian rhythmicity through protein–protein interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7469, doi. 10.1093/nar/gky629

By:

Shalev, Moran;
Aviram, Rona;
Adamovich, Yaarit;
Kraut-Cohen, Judith;
Shamia, Tal;
Ben-Dor, Shifra;
Golik, Marina;
Asher, Gad

Publication type:

Article

A pipeline for computational design of novel RNA-like topologies.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7040, doi. 10.1093/nar/gky524

By:

Jain, Swati;
Laederach, Alain;
V. Ramos, Silvia B;
Schlick, Tamar

Publication type:

Article

N-terminal domain of human uracil DNA glycosylase (hUNG2) promotes targeting to uracil sites adjacent to ssDNA–dsDNA junctions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7169, doi. 10.1093/nar/gky525

By:

Weiser, Brian P;
Rodriguez, Gaddiel;
Cole, Philip A;
Stivers, James T

Publication type:

Article

MNase, as a probe to study the sequence-dependent site exposures in the +1 nucleosomes of yeast.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7124, doi. 10.1093/nar/gky502

By:

Luo, Di;
Kato, Daiki;
Nogami, Jumpei;
Ohkawa, Yasuyuki;
Kurumizaka, Hitoshi;
Kono, Hidetoshi

Publication type:

Article

MMARGE: Motif Mutation Analysis for Regulatory Genomic Elements.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7006, doi. 10.1093/nar/gky491

By:

Link, Verena M;
Romanoski, Casey E;
Metzler, Dirk;
Glass, Christopher K

Publication type:

Article

The mitochondrial single-stranded DNA binding protein from S. cerevisiae, Rim1, does not form stable homo-tetramers and binds DNA as a dimer of dimers.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7193, doi. 10.1093/nar/gky530

By:

Singh, Saurabh P;
Kukshal, Vandna;
Bona, Paolo De;
Antony, Edwin;
Galletto, Roberto

Publication type:

Article

MeShClust: an intelligent tool for clustering DNA sequences.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e83, doi. 10.1093/nar/gky315

By:

James, Benjamin T;
Luczak, Brian B;
Girgis, Hani Z

Publication type:

Article

Loose ends: almost one in five human genes still have unresolved coding status.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7070, doi. 10.1093/nar/gky587

By:

Abascal, Federico;
Juan, David;
Jungreis, Irwin;
Martinez, Laura;
Rigau, Maria;
Rodriguez, Jose Manuel;
Vazquez, Jesus;
Tress, Michael L

Publication type:

Article

The landscape of the non-canonical RNA-binding site of Gemin5 unveils a feedback loop counteracting the negative effect on translation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7339, doi. 10.1093/nar/gky361

By:

Francisco-Velilla, Rosario;
Fernandez-Chamorro, Javier;
Dotu, Ivan;
Martinez-Salas, Encarnación

Publication type:

Article

Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7296, doi. 10.1093/nar/gky492

By:

Cao, Nan;
Tan, Kemin;
Annamalai, Thirunavukkarasu;
Joachimiak, Andrzej;
Tse-Dinh, Yuk-Ching

Publication type:

Article

Intrinsically disordered domain of tumor suppressor p53 facilitates target search by ultrafast transfer between different DNA strands.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7261, doi. 10.1093/nar/gky586

By:

Itoh, Yuji;
Murata, Agato;
Takahashi, Satoshi;
Kamagata, Kiyoto

Publication type:

Article

Initiation of homologous recombination at DNA nicks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6962, doi. 10.1093/nar/gky588

By:

Maizels, Nancy;
Davis, Luther

Publication type:

Article

Inferring and modeling inheritance of differentially methylated changes across multiple generations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7466, doi. 10.1093/nar/gky477

By:

Belleau, Pascal;
Deschênes, Astrid;
Scott-Boyer, Marie-Pier;
Lambrot, Romain;
Dalvai, Mathieu;
Kimmins, Sarah;
Bailey, Janice;
Droit, Arnaud

Publication type:

Article

Inferring and modeling inheritance of differentially methylated changes across multiple generations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e85, doi. 10.1093/nar/gky362

By:

Belleau, Pascal;
Deschênes, Astrid;
Scott-Boyer, Marie-Pier;
Lambrot, Romain;
Dalvai, Mathieu;
Kimmins, Sarah;
Bailey, Janice;
Droit, Arnaud

Publication type:

Article

Improved sgRNA design in bacteria via genome-wide activity profiling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7052, doi. 10.1093/nar/gky572

By:

Guo, Jiahui;
Wang, Tianmin;
Guan, Changge;
Liu, Bing;
Luo, Cheng;
Xie, Zhen;
Zhang, Chong;
Xing, Xin-Hui

Publication type:

Article

Identification of conserved, primary sequence motifs that direct retrovirus RNA fate.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7366, doi. 10.1093/nar/gky369

By:

Singh, Gatikrushna;
Rife, Brittany D;
Seufzer, Bradley;
Salemi, Marco;
Rendahl, Aaron;
Boris-Lawrie, Kathleen

Publication type:

Article

Human copy number variants are enriched in regions of low mappability.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7236, doi. 10.1093/nar/gky538

By:

Monlong, Jean;
Cossette, Patrick;
Meloche, Caroline;
Rouleau, Guy;
Girard, Simon L;
Bourque, Guillaume

Publication type:

Article

High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7436, doi. 10.1093/nar/gky550

By:

Mason, Derek M;
Weber, Cédric R;
Parola, Cristina;
Meng, Simon M;
Greiff, Victor;
Kelton, William J;
Reddy, Sai T

Publication type:

Article

High-density functional-RNA arrays as a versatile platform for studying RNA-based interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e86, doi. 10.1093/nar/gky410

By:

Phillips, Jack O;
Butt, Louise E;
Henderson, Charlotte A;
Devonshire, Martin;
Healy, Jess;
Conway, Stuart J;
Locker, Nicolas;
Pickford, Andrew R;
Vincent, Helen A;
Callaghan, Anastasia J

Publication type:

Article

Generating genomic platforms to study Candida albicans pathogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 6935, doi. 10.1093/nar/gky594

By:

Legrand, Mélanie;
Bachellier-Bassi, Sophie;
Lee, Keunsook K;
Chaudhari, Yogesh;
Tournu, Hélène;
Arbogast, Laurence;
Boyer, Hélène;
Chauvel, Murielle;
Cabral, Vitor;
Maufrais, Corinne

Publication type:

Article

A fluorescent reporter for quantification and enrichment of DNA editing by APOBEC–Cas9 or cleavage by Cas9 in living cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e84, doi. 10.1093/nar/gky332

By:

St. Martin, Amber;
Salamango, Daniel;
Serebrenik, Artur;
Shaban, Nadine;
Brown, William L;
Donati, Francesco;
Munagala, Uday;
Conticello, Silvestro G;
Harris, Reuben S

Publication type:

Article

Evolutionary rates of mammalian telomere-stability genes correlate with karyotype features and female germline expression.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7153, doi. 10.1093/nar/gky494

By:

Pontremoli, Chiara;
Forni, Diego;
Cagliani, Rachele;
Pozzoli, Uberto;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Engineering orthogonal synthetic timer circuits based on extracytoplasmic function σ factors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7450, doi. 10.1093/nar/gky614

By:

Pinto, Daniela;
Vecchione, Stefano;
Wu, Hao;
Mauri, Marco;
Mascher, Thorsten;
Fritz, Georg

Publication type:

Article

Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7179, doi. 10.1093/nar/gky527

By:

Schult, Frank;
Le, Thuong N;
Albersmeier, Andreas;
Rauch, Bernadette;
Blumenkamp, Patrick;
van der Does, Chris;
Goesmann, Alexander;
Kalinowski, Jörn;
Albers, Sonja-Verena;
Siebers, Bettina

Publication type:

Article

DNA repair factor APLF acts as a H2A-H2B histone chaperone through binding its DNA interaction surface.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7138, doi. 10.1093/nar/gky507

By:

Corbeski, Ivan;
Dolinar, Klemen;
Wienk, Hans;
Boelens, Rolf;
van Ingen, Hugo

Publication type:

Article

Cyclic di-GMP integrates functionally divergent transcription factors into a regulation pathway for antioxidant defense.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7270, doi. 10.1093/nar/gky611

By:

Li, Weihui;
Hu, Lihua;
Xie, Zhiwei;
Xu, Hui;
Li, Meng;
Cui, Tao;
He, Zheng-Guo

Publication type:

Article

The crystal structure of the RsbN–σBldN complex from Streptomyces venezuelae defines a new structural class of anti-σ factor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7405, doi. 10.1093/nar/gky493

By:

Schumacher, Maria A;
Bush, Matthew J;
Bibb, Maureen J;
Ramos-León, Félix;
Chandra, Govind;
Zeng, Wenjie;
Buttner, Mark J

Publication type:

Article

The crystal structure of the RsbN–σBldN complex from Streptomyces venezuelae defines a new structural class of anti-σ factor.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7467, doi. 10.1093/nar/gky616

By:

Schumacher, Maria A;
Bush, Matthew J;
Bibb, Maureen J;
Ramos-León, Félix;
Chandra, Govind;
Zeng, Wenjie;
Buttner, Mark J

Publication type:

Article

Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7396, doi. 10.1093/nar/gky345

By:

Wu, Pei-Ching;
Tzeng, Shu-Ling;
Chang, Chung-ke;
Kao, Ya-Fen;
Waring, Michael J;
Hou, Ming-Hon

Publication type:

Article

Convergent evolution of integration site selection upstream of tRNA genes by yeast and amoeba retrotransposons.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7250, doi. 10.1093/nar/gky582

By:

Kling, Eva;
Spaller, Thomas;
Schiefner, Jana;
Bönisch, Doreen;
Winckler, Thomas

Publication type:

Article

Cis-regulatory determinants of MyoD function.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7221, doi. 10.1093/nar/gky388

By:

Soleimani, Vahab D;
Nguyen, Duy;
Ramachandran, Parameswaran;
Palidwor, Gareth A;
Porter, Christopher J;
Yin, Hang;
Perkins, Theodore J;
Rudnicki, Michael A

Publication type:

Article

Choice of binding sites for CTCFL compared to CTCF is driven by chromatin and by sequence preference.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7097, doi. 10.1093/nar/gky483

By:

Bergmaier, Philipp;
Weth, Oliver;
Dienstbach, Sven;
Boettger, Thomas;
Galjart, Niels;
Mernberger, Marco;
Bartkuhn, Marek;
Renkawitz, Rainer

Publication type:

Article

BCseq: accurate single cell RNA-seq quantification with bias correction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. e82, doi. 10.1093/nar/gky308

By:

Chen, Liang;
Zheng, Sika

Publication type:

Article

Bacillus subtilis RarA modulates replication restart.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 14, p. 7206, doi. 10.1093/nar/gky541

By:

Carrasco, Begoña;
Seco, Elena M;
López-Sanz, María;
Alonso, Juan C;
Ayora, Silvia

Publication type:

Article