Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 12

Results: 44

Functional insights into the Streptococcus pneumoniae HicBA toxin–antitoxin system based on a structural study.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6371, doi. 10.1093/nar/gky469

By:

Do-Hee Kim;
Sung-Min Kang;
Sung Jean Park;
Chenglong Jin;
Hye-Jin Yoon;
Bong-Jin Lee

Publication type:

Article

The translational landscape of Arabidopsis mitochondria.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6218, doi. 10.1093/nar/gky489

By:

Planchard, Noelya;
Bertin, Pierre;
Quadrado, Martine;
Dargel-Graffin, Céline;
Hatin, Isabelle;
Namy, Olivier;
Mireau, Hakim

Publication type:

Article

Bacterial EndoMS/NucS acts as a clamp-mediated mismatch endonuclease to prevent asymmetric accumulation of replication errors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6152, doi. 10.1093/nar/gky481

By:

Takemoto, Norihiko;
Numata, Itaru;
Su'etsugu, Masayuki;
Miyoshi-Akiyama, Tohru

Publication type:

Article

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6206, doi. 10.1093/nar/gky460

By:

Ishino, Sonoko;
Skouloubris, Stéphane;
Kudo, Hanae;
l'Hermitte-Stead, Caroline;
Es-Sadik, Asmae;
Lambry, Jean-Christophe;
Ishino, Yoshizumi;
Myllykallio, Hannu

Publication type:

Article

Origin recognition is the predominant role for DnaA-ATP in initiation of chromosome replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6140, doi. 10.1093/nar/gky457

By:

Grimwade, Julia E;
Rozgaja, Tania A;
Gupta, Rajat;
Dyson, Kyle;
Rao, Prassanna;
Leonard, Alan C

Publication type:

Article

Identification of a novel TIF-IA--NF-ĸB nucleolar stress response pathway.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6188, doi. 10.1093/nar/gky455

By:

Chen, Jingyu;
Lobb, Ian T;
Morin, Pierre;
Novo, Sonia M;
Simpson, James;
Kennerknecht, Kathrin;
von Kriegsheim, Alex;
Batchelor, Emily E;
Oakley, Fiona;
Stark, Lesley A

Publication type:

Article

Discovery of two-level modular organization from matched genomic data via joint matrix tri-factorization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5967, doi. 10.1093/nar/gky440

By:

Chen, Jinyu;
Zhang, Shihua

Publication type:

Article

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5950, doi. 10.1093/nar/gky437

By:

Stojic, Lovorka;
Lun, Aaron T L;
Mangei, Jasmin;
Mascalchi, Patrice;
Quarantotti, Valentina;
Barr, Alexis R;
Bakal, Chris;
Marioni, John C;
Gergely, Fanni;
Odom, Duncan T

Publication type:

Article

Diffusion of ring-shaped proteins along DNA: case study of sliding clamps.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5935, doi. 10.1093/nar/gky436

By:

Daitchman, Dina;
Greenblatt, Harry M;
Levy, Yaakov

Publication type:

Article

N<sup>4</sup>-acyl-2'-deoxycytidine-5'-triphosphates for the enzymatic synthesis of modified DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5911, doi. 10.1093/nar/gky435

By:

Jakubovska, Jevgenija;
Tauraitė, Daiva;
Birštonas, Lukas;
Meškys, Rolandas

Publication type:

Article

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6271, doi. 10.1093/nar/gky413

By:

Randrianjatovo-Gbalou, Irina;
Rosario, Sandrine;
Sismeiro, Odile;
Varet, Hugo;
Legendre, Rachel;
Coppée, Jean-Yves;
Huteau, Valérie;
Pochet, Sylvie;
Delarue, Marc

Publication type:

Article

The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6257, doi. 10.1093/nar/gky412

By:

T. Abshire, Elizabeth;
Chasseur, Jennifer;
Bohn, Jennifer A;
Del Rizzo, Paul A;
Freddolino, Peter L;
Goldstrohm, Aaron C;
Trievel, Raymond C

Publication type:

Article

DNA base sequence effects on bulky lesion-induced conformational heterogeneity during DNA replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6356, doi. 10.1093/nar/gky409

By:

Cai, Ang;
Wilson, Katie A;
Patnaik, Satyakam;
Wetmore, Stacey D;
Cho, Bongsup P

Publication type:

Article

MPK-1/ERK pathway regulates DNA damage response during development through DAF-16/FOXO.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6129, doi. 10.1093/nar/gky404

By:

Bianco, Julien N;
Schumacher, Björn

Publication type:

Article

A minimal threshold of FANCJ helicase activity is required for its response to replication stress or double-strand break repair.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6238, doi. 10.1093/nar/gky403

By:

Bharti, Sanjay Kumar;
Sommers, Joshua A;
Awate, Sanket;
Bellani, Marina A;
Khan, Irfan;
Bradley, Lynda;
King, Graeme A;
Seol, Yeonee;
Vidhyasagar, Venkatasubramanian;
Wu, Yuliang

Publication type:

Article

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5875, doi. 10.1093/nar/gky402

By:

Kottur, Jithesh;
Nair, Deepak T

Publication type:

Article

Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6069, doi. 10.1093/nar/gky401

By:

Liu, Hongfei;
Lorenzini, Paolo A;
Zhang, Fan;
Xu, Shaohai;
Wong, Mei Su M;
Zheng, Jie;
Roca, Xavier

Publication type:

Article

Nucleoside analogs to manage sequence divergence in nucleic acid amplification and SNP detection.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5902, doi. 10.1093/nar/gky392

By:

Yang, Zunyi;
Kim, Hyo-Joong;
Le, Jennifer T;
McLendon, Chris;
Bradley, Kevin M;
Kim, Myong-Sang;
Hutter, Daniel;
Hoshika, Shuichi;
Yaren, Ozlem;
Benner, Steven A

Publication type:

Article

G-quadruplex binding ability of TLS/FUS depends on the β-spiral structure of the RGG domain.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5894, doi. 10.1093/nar/gky391

By:

Yagi, Ryota;
Miyazaki, Takatsugu;
Oyoshi, Takanori

Publication type:

Article

Redox-dependent control of i-Motif DNA structure using copper cations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5886, doi. 10.1093/nar/gky390

By:

Abdelhamid, Mahmoud AS;
Fábián, László;
MacDonald, Colin J;
Cheesman, Myles R;
Gates, Andrew J;
Waller, Zoë AE

Publication type:

Article

PUF60-activated exons uncover altered 3' splice-site selection by germline missense mutations in a single RRM.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6166, doi. 10.1093/nar/gky389

By:

Královičová, Jana;
Ševčíková, Ivana;
Stejskalová, Eva;
Obuća, Mina;
Hiller, Michael;
Staněk, David;
Vořechovský, Igor

Publication type:

Article

Properties of gene expression and chromatin structure with mechanically regulated elongation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5924, doi. 10.1093/nar/gky382

By:

Sevier, Stuart A;
Levine, Herbert

Publication type:

Article

Single-site DNA cleavage by Type III restriction endonuclease requires a site-bound enzyme and a trans-acting enzyme that are ATPase-activated.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6229, doi. 10.1093/nar/gky344

By:

Ahmad, Ishtiyaq;
Kulkarni, Manasi;
Gopinath, Aathira;
Saikrishnan, Kayarat

Publication type:

Article

Peripheral re-localization of constitutive heterochromatin advances its replication timing and impairs maintenance of silencing marks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6112, doi. 10.1093/nar/gky368

By:

Heinz, Kathrin S;
Casas-Delucchi, Corella S;
Török, Timea;
Cmarko, Dusan;
Rapp, Alexander;
Raska, Ivan;
Cardoso, M Cristina

Publication type:

Article

Dynamic chromosomal tuning of a novel GAU1 lncing driver at chr12p13.32 accelerates tumorigenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6041, doi. 10.1093/nar/gky366

By:

Chai, Peiwei;
Jia, Ruobing;
Jia, Renbing;
Pan, Hui;
Wang, Shaoyun;
Ni, Hongyan;
Wang, Huixue;
Zhou, Chuandi;
Shi, Yingyun;
Ge, Shengfang

Publication type:

Article

Oligonucleotide-mediated tRNA sequestration enables one-pot sense codon reassignment in vitro.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6387, doi. 10.1093/nar/gky365

By:

Cui, Zhenling;
Wu, Yue;
Mureev, Sergey;
Alexandrov, Kirill

Publication type:

Article

Sin3a--Tet1 interaction activates gene transcription and is required for embryonic stem cell pluripotency.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6026, doi. 10.1093/nar/gky347

By:

Zhu, Fugui;
Zhu, Qianshu;
Ye, Dan;
Zhang, Qingquan;
Yang, Yiwei;
Guo, Xudong;
Liu, Zhenping;
Jiapaer, Zeyidan;
Wan, Xiaoping;
Wang, Guiying

Publication type:

Article

Cooperative binding of ApiAP2 transcription factors is crucial for the expression of virulence genes in Toxoplasma gondii.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6057, doi. 10.1093/nar/gky373

By:

Lesage, Kevin M;
Huot, Ludovic;
Mouveaux, Thomas;
Courjol, Flavie;
Saliou, Jean-Michel;
Gissot, Mathieu

Publication type:

Article

ComM is a hexameric helicase that promotes branch migration during natural transformation in diverse Gram-negative species.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6099, doi. 10.1093/nar/gky343

By:

Nero, Thomas M;
Dalia, Triana N;
Wang, Joseph Che-Yen;
Kysela, David T;
Bochman, Matthew L;
Dalia, Ankur B

Publication type:

Article

Antisense transcriptional interference mediates condition-specific gene repression in budding yeast.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6009, doi. 10.1093/nar/gky342

By:

Nevers, Alicia;
Doyen, Antonia;
Malabat, Christophe;
Néron, Bertrand;
Kergrohen, Thomas;
Jacquier, Alain;
Badis, Gwenael

Publication type:

Article

An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5996, doi. 10.1093/nar/gky340

By:

Chang, Jae-Woong;
Zhang, Wei;
Yeh, Hsin-Sung;
Park, Meeyeon;
Yao, Chengguo;
Shi, Yongsheng;
Kuang, Rui;
Yong, Jeongsik

Publication type:

Article

Global DNA methylation synergistically regulates the nuclear and mitochondrial genomes in glioblastoma cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 5977, doi. 10.1093/nar/gky339

By:

Sun, Xin;
Johnson, Jacqueline;
St. John, Justin C

Publication type:

Article

CHD3 and CHD4 recruitment and chromatin remodeling activity at DNA breaks is promoted by early poly(ADP-ribose)-dependent chromatin relaxation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6087, doi. 10.1093/nar/gky334

By:

Smith, Rebecca;
Sellou, Hafida;
Chapuis, Catherine;
Huet, Sébastien;
Timinszky, Gyula

Publication type:

Article

HITS-CLIP in various brain areas reveals new targets and new modalities of RNA binding by fragile X mental retardation protein.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6344, doi. 10.1093/nar/gky267

By:

Maurin, Thomas;
Lebrigand, Kevin;
Castagnola, Sara;
Paquet, Agnès;
Jarjat, Marielle;
Popa, Alexandra;
Grossi, Mauro;
Rage, Florence;
Bardoni, Barbara

Publication type:

Article

Eukaryotic translation initiation factor 4AII contributes to microRNA-122 regulation of hepatitis C virus replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6330, doi. 10.1093/nar/gky262

By:

Ahmed, Choudhary Shoaib;
Winlow, Poppy L;
Parsons, Aimee L;
Jopling, Catherine L

Publication type:

Article

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky252

By:

Guertin, Michael J;
Cullen, Amy E;
Markowetz, Florian;
Holding, Andrew N

Publication type:

Article

Enhanced detection of microsatellite instability using pre-PCR elimination of wild-type DNA homo-polymers in tissue and liquid biopsies.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky251

By:

Ladas, Ioannis;
Yu, Fangyan;
Leong, Ka Wai;
Fitarelli-Kiehl, Mariana;
Song, Chen;
Ashtaputre, Ravina;
Kulke, Matthew;
Mamon, Harvey;
Makrigiorgos, G Mike

Publication type:

Article

dUTPs conjugated with zwitterionic Cy3 or Cy5 fluorophore analogues are effective substrates for DNA amplification and labelling by Taq polymerase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky247

By:

Zasedateleva, Olga A;
Vasiliskov, Vadim A;
Surzhikov, Sergey A;
Kuznetsova, Viktoriya E;
Shershov, Valeriy E;
Guseinov, Timur O;
Smirnov, Igor P;
Yurasov, Roman A;
Spitsyn, Maksim A;
Chudinov, Alexander V

Publication type:

Article

A novel method for improved accuracy of transcription factor binding site prediction.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky237

By:

Khamis, Abdullah M;
Motwalli, Olaa;
Oliva, Romina;
Jankovic, Boris R;
Medvedeva, Yulia A;
Ashoor, Haitham;
Essack, Magbubah;
Gao, Xin;
Bajic, Vladimir B

Publication type:

Article

Control of mRNA decapping by autoinhibition.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6318, doi. 10.1093/nar/gky233

By:

Paquette, David R;
Tibble, Ryan W;
Daifuku, Tristan S;
Gross, John D

Publication type:

Article

DDX49 is an RNA helicase that affects translation by regulating mRNA export and the levels of pre-ribosomal RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6304, doi. 10.1093/nar/gky231

By:

Awasthi, Sharad;
Verma, Mamta;
Mahesh, Arun;
K. Khan, Mohd Imran;
Govindaraju, Gayathri;
Rajavelu, Arumugam;
Chavali, Pavithra L;
Chavali, Sreenivas;
Dhayalan, Arunkumar

Publication type:

Article

IGF2BP1 enhances an aggressive tumor cell phenotype by impairing miRNA-directed downregulation of oncogenic factors.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 6285, doi. 10.1093/nar/gky229

By:

Müller, Simon;
Bley, Nadine;
Glaß, Markus;
Busch, Bianca;
Rousseau, Vanessa;
Misiak, Danny;
Fuchs, Tommy;
Lederer, Marcell;
Hüttelmaier, Stefan

Publication type:

Article

Paired D10A Cas9 nickases are sometimes more efficient than individual nucleases for gene disruption.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky222

By:

Gopalappa, Ramu;
Suresh, Bharathi;
Ramakrishna, Suresh;
Kim, Hyongbum (Henry)

Publication type:

Article

Direct transfection of clonal organoids in Matrigel microbeads: a promising approach toward organoid-based genetic screens.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 12, p. 1, doi. 10.1093/nar/gky030

By:

Laperrousaz, Bastien;
Porte, Stephanie;
Gerbaud, Sophie;
Härmä, Ville;
Kermarrec, Frédérique;
Hourtane, Virginie;
Bottausci, Frédéric;
Gidrol, Xavier;
Picollet-D'hahan, Nathalie

Publication type:

Article