Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 10

Results: 41

The fractured landscape of RNA-seq alignment: the default in our STARs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5125, doi. 10.1093/nar/gky325

By:

Ballouz, Sara;
Dobin, Alexander;
Gingeras, Thomas R;
Gillis, Jesse

Publication type:

Article

The Uba4 domain interplay is mediated via a thioester that is critical for tRNA thiolation through Urm1 thiocarboxylation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5171, doi. 10.1093/nar/gky312

By:

Termathe, Martin;
Leidel, Sebastian A

Publication type:

Article

Structure and hydrodynamics of a DNA G-quadruplex with a cytosine bulge.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5319, doi. 10.1093/nar/gky307

By:

Meier, Markus;
Moya-Torres, Aniel;
Krahn, Natalie J;
McDougall, Matthew D;
Orriss, George L;
McRae, Ewan K S;
Booy, Evan P;
McEleney, Kevin;
Patel, Trushar R;
McKenna, Sean A

Publication type:

Article

Telomere sequence content can be used to determine ALT activity in tumours.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4903, doi. 10.1093/nar/gky297

By:

Lee, Michael;
Teber, Erdahl T;
Holmes, Oliver;
Nones, Katia;
Patch, Ann-Marie;
Dagg, Rebecca A;
Lau, Loretta M S;
Lee, Joyce H;
Napier, Christine E;
Arthur, Jonathan W

Publication type:

Article

The phage T4 MotA transcription factor contains a novel DNA binding motif that specifically recognizes modified DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5308, doi. 10.1093/nar/gky292

By:

Cuypers, Maxime G;
Robertson, Rosanna M;
Knipling, Leslie;
Waddell, M Brett;
Moon, Kyung;
Hinton, Deborah M;
White, Stephen W

Publication type:

Article

Quadruplexes in 'Dicty': crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5297, doi. 10.1093/nar/gky290

By:

Guédin, Aurore;
Lin, Linda Yingqi;
Armane, Samir;
Lacroix, Laurent;
Mergny, Jean-Louis;
Thore, Stéphane;
Yatsunyk, Liliya A

Publication type:

Article

Engineering altered protein-DNA recognition specificity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4845, doi. 10.1093/nar/gky289

By:

Bogdanove, Adam J;
Bohm, Andrew;
Miller, Jeffrey C;
Morgan, Richard D;
Stoddard, Barry L

Publication type:

Article

T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5332, doi. 10.1093/nar/gky283

By:

Schaffter, Samuel W;
Green, Leopold N;
Schneider, Joanna;
Subramanian, Hari K K;
Schulman, Rebecca;
Franco, Elisa

Publication type:

Article

Phosphorylation by CK2 regulates MUS81/EME1 in mitosis and after replication stress.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5109, doi. 10.1093/nar/gky280

By:

Palma, Anita;
Pugliese, Giusj Monia;
Murfuni, Ivana;
Marabitti, Veronica;
Malacaria, Eva;
Rinalducci, Sara;
Minoprio, Anna;
Sanchez, Massimo;
Mazzei, Filomena;
Zolla, Lello

Publication type:

Article

Defining the impact of sumoylation on substrate binding and catalysis by thymine DNA glycosylase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5159, doi. 10.1093/nar/gky278

By:

Coey, Christopher T;
Drohat, Alexander C

Publication type:

Article

Complex repeat structure promotes hyper-amplification and amplicon evolution through rolling-circle replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5097, doi. 10.1093/nar/gky275

By:

Watanabe, Takaaki;
Tanaka, Hisashi;
Horiuchi, Takashi

Publication type:

Article

miR-122 does not impact recognition of the HCV genome by innate sensors of RNA but rather protects the 5' end from the cellular pyrophosphatases, DOM3Z and DUSP11.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5139, doi. 10.1093/nar/gky273

By:

Amador-Cañizares, Yalena;
Bernier, Annie;
Wilson, Joyce A;
Sagan, Selena M

Publication type:

Article

Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4883, doi. 10.1093/nar/gky270

By:

Spasic, Aleksandar;
Berger, Kyle D;
Chen, Jonathan L;
Seetin, Matthew G;
Turner, Douglas H;
Mathews, David H

Publication type:

Article

Coordination of Rad1-Rad10 interactions with Msh2-Msh3, Saw1 and RPA is essential for functional 3' non-homologous tail removal.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5075, doi. 10.1093/nar/gky254

By:

Eichmiller, Robin;
Medina-Rivera, Melisa;
DeSanto, Rachel;
Minca, Eugen;
Kim, Christopher;
Holland, Cory;
Seol, Ja-Hwan;
Schmit, Megan;
Oramus, Diane;
Smith, Jessica

Publication type:

Article

Antisense oligonucleotides correct the familial dysautonomia splicing defect in IKBKAP transgenic mice.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4833, doi. 10.1093/nar/gky249

By:

Sinha, Rahul;
Kim, Young Jin;
Nomakuchi, Tomoki;
Sahashi, Kentaro;
Hua, Yimin;
Rigo, Frank;
Bennett, C Frank;
Krainer, Adrian R

Publication type:

Article

Histone H3 lysine 36 methyltransferase mobilizes NER factors to regulate tolerance against alkylation damage in fission yeast.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5061, doi. 10.1093/nar/gky245

By:

Lim, Kim Kiat;
Nguyen, Thi Thuy Trang;
Li, Adelicia Yongling;
Yeo, Yee Phan;
Chen, Ee Sin

Publication type:

Article

Phosphorylation of xeroderma pigmentosum group C regulates ultraviolet-induced DNA damage repair.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5050, doi. 10.1093/nar/gky239

By:

Shah, Palak;
Zhao, Baozhong;
Qiang, Lei;
He, Yu-Ying

Publication type:

Article

The DNA damage response activates HPV16 late gene expression at the level of RNA processing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5029, doi. 10.1093/nar/gky227

By:

Nilsson, Kersti;
Wu, Chengjun;
Kajitani, Naoko;
Yu, Haoran;
Tsimtsirakis, Efthymios;
Gong, Lijing;
Winquist, Ellenor B;
Glahder, Jacob;
Ekblad, Lars;
Wennerberg, Johan

Publication type:

Article

Influence of Na+ and Mg2+ ions on RNA structures studied with molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4872, doi. 10.1093/nar/gky221

By:

Fischer, Nina M;
Polêto, Marcelo D;
Steuer, Jakob;
van der Spoel, David

Publication type:

Article

Transcriptional and epigenetic adaptation of maize chromosomes in Oat-Maize addition lines.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5012, doi. 10.1093/nar/gky209

By:

Dong, Zhaobin;
Yu, Juan;
Li, Hui;
Huang, Wei;
Xu, Ling;
Zhao, Yue;
Zhang, Tao;
Xu, Wenying;
Jiang, Jiming;
Su, Zhen

Publication type:

Article

Sliding of a single lac repressor protein along DNA is tuned by DNA sequence and molecular switching.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5001, doi. 10.1093/nar/gky208

By:

Tempestini, Alessia;
Monico, Carina;
Gardini, Lucia;
Vanzi, Francesco;
Pavone, Francesco S;
Capitanio, Marco

Publication type:

Article

Coupling of replisome movement with nucleosome dynamics can contribute to the parent-daughter information transfer.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4991, doi. 10.1093/nar/gky207

By:

Bameta, Tripti;
Das, Dibyendu;
Padinhateeri, Ranjith

Publication type:

Article

The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4978, doi. 10.1093/nar/gky206

By:

Tokuda, Joshua M;
Ren, Ren;
Levendosky, Robert F;
Tay, Rebecca J;
Yan, Ming;
Pollack, Lois;
Bowman, Gregory D

Publication type:

Article

Tetramerization of MADS family transcription factors SEPALLATA3 and AGAMOUS is required for floral meristem determinacy in Arabidopsis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4966, doi. 10.1093/nar/gky205

By:

Hugouvieux, Véronique;
Silva, Catarina S;
Jourdain, Agnès;
Stigliani, Arnaud;
Charras, Quentin;
Conn, Vanessa;
Conn, Simon J;
Carles, Cristel C;
Parcy, François;
Zubieta, Chloe

Publication type:

Article

Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4950, doi. 10.1093/nar/gky196

By:

Iacono, Giovanni;
Dubos, Aline;
Méziane, Hamid;
Benevento, Marco;
Habibi, Ehsan;
Mandoli, Amit;
Riet, Fabrice;
Selloum, Mohammed;
Feil, Robert;
Zhou, Huiqing

Publication type:

Article

Mbd2-CP2c loop drives adult-type globin gene expression and definitive erythropoiesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4933, doi. 10.1093/nar/gky193

By:

Kim, Min Young;
Kim, Ji Sook;
Son, Seung Han;
Lim, Chang Su;
Eum, Hea Young;
Ha, Dae Hyun;
Park, Mi Ae;
Baek, Eun Jung;
Ryu, Buom-Yong;
Kang, Ho Chul

Publication type:

Article

IFIT3 and IFIT2/3 promote IFIT1-mediated translation inhibition by enhancing binding to non-self RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5269, doi. 10.1093/nar/gky191

By:

Fleith, Renata C;
Mears, Harriet V;
Leong, Xin Yun;
Sanford, Thomas J;
Emmott, Edward;
Graham, Stephen C;
Mansur, Daniel S;
Sweeney, Trevor R

Publication type:

Article

Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5250, doi. 10.1093/nar/gky189

By:

Luo, Shiqi;
He, Feng;
Luo, Junjie;
Dou, Shengqian;
Wang, Yirong;
Guo, Annan;
Lu, Jian

Publication type:

Article

Collection of homozygous mutant mouse embryonic stem cells arising from autodiploidization during haploid gene trap mutagenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky183

By:

Yamanishi, Ayako;
Matsuba, Atsushi;
Kondo, Ryohei;
Akamatsu, Rie;
Tanaka, Sachiyo;
Tokunaga, Masahiro;
Horie, Kyoji;
Kokubu, Chikara;
Ishida, Yasumasa;
Takeda, Junji

Publication type:

Article

Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky182

By:

Cole, Charles;
Byrne, Ashley;
Beaudin, Anna E;
Forsberg, E Camilla;
Vollmers, Christopher

Publication type:

Article

De novo annotation and characterization of the translatome with ribosome profiling data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky179

By:

Xiao, Zhengtao;
Huang, Rongyao;
Xing, Xudong;
Chen, Yuling;
Deng, Haiteng;
Yang, Xuerui

Publication type:

Article

An upstream open reading frame (uORF) signals for cellular localization of the virulence factor implicated in pregnancy associated malaria.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 4919, doi. 10.1093/nar/gky178

By:

Fastman, Yair;
Assaraf, Shany;
Rose, Miriam;
Milrot, Elad;
Basore, Katherine;
Arasu, B Sivanandam;
Desai, Sanjay A;
Elbaum, Michael;
Dzikowski, Ron

Publication type:

Article

An origin of the immunogenicity of in vitro transcribed RNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5239, doi. 10.1093/nar/gky177

By:

Mu, Xin;
Greenwald, Emily;
Ahmad, Sadeem;
Hur, Sun

Publication type:

Article

Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky175

By:

Yoon, Sora;
Nguyen, Hai C T;
Yoo, Yun J;
Kim, Jinhwan;
Baik, Bukyung;
Kim, Sounkou;
Kim, Jin;
Kim, Sangsoo;
Nam, Dougu

Publication type:

Article

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky174

By:

Boyd, Joel A;
Woodcroft, Ben J;
Tyson, Gene W

Publication type:

Article

Molecular basis of titin exon exclusion by RBM20 and the novel titin splice regulator PTB4.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5227, doi. 10.1093/nar/gky165

By:

Dauksaite, Vita;
Gotthardt, Michael

Publication type:

Article

Easy quantification of template-directed CRISPR/Cas9 editing.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 1, doi. 10.1093/nar/gky164

By:

Brinkman, Eva K;
Kousholt, Arne N;
Harmsen, Tim;
Leemans, Christ;
Chen, Tao;
Jonkers, Jos;
van Steensel, Bas

Publication type:

Article

Polyadenylation and degradation of structurally abnormal mitochondrial tRNAs in human cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5209, doi. 10.1093/nar/gky159

By:

Toompuu, Marina;
Tuomela, Tea;
Laine, Pia;
Paulin, Lars;
Dufour, Eric;
Jacobs, Howard T

Publication type:

Article

SUMOylation of the m6A-RNA methyltransferase METTL3 modulates its function.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5195, doi. 10.1093/nar/gky156

By:

Du, Yuzhang;
Hou, Guofang;
Zhang, Hailong;
Dou, Jinzhuo;
He, Jianfeng;
Guo, Yanming;
Li, Lian;
Chen, Ran;
Wang, Yanli;
Deng, Rong

Publication type:

Article

A metastable rRNA junction essential for bacterial 30S biogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5182, doi. 10.1093/nar/gky120

By:

Sharma, Indra Mani;
Rappé, Mollie C;
Addepalli, Balasubrahmanyam;
Grabow, Wade W;
Zhuang, Zhuoyun;
Abeysirigunawardena, Sanjaya C;
Limbach, Patrick A;
Jaeger, Luc;
Woodson, Sarah A

Publication type:

Article

Snapshots of a molecular swivel in action.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5286, doi. 10.1093/nar/gkx1309

By:

Trejo, Caitlin S;
Rock, Ronald S;
Stark, W Marshall;
Boocock, Martin R;
Rice, Phoebe A

Publication type:

Article