Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP 1

Results: 42

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 42, doi. 10.1093/nar/gkx1211

By:

Padroni, Giacomo;
Parkinson, John A;
Fox, Keith R;
Burley, Glenn A

Publication type:

Article

Shaping epigenetic memory via genomic bookmarking.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 83, doi. 10.1093/nar/gkx1200

By:

Michieletto, Davide;
Chiang, Michael;
Colì, Davide;
Papantonis, Argyris;
Orlandini, Enzo;
Cook, Peter R;
Marenduzzo, Davide

Publication type:

Article

Conformational dynamics of the Hop1 HORMA domain reveal a common mechanism with the spindle checkpoint protein Mad2.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 279, doi. 10.1093/nar/gkx1196

By:

West, Alan M V;
Komives, Elizabeth A;
Corbett, Kevin D

Publication type:

Article

Inhibition of DNA replication by an anti-PCNA aptamer/PCNA complex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 25, doi. 10.1093/nar/gkx1184

By:

Kowalska, Ewa;
Bartnicki, Filip;
Fujisawa, Ryo;
Bonarek, Piotr;
Hermanowicz, Paweł;
Tsurimoto, Toshiki;
Muszyńska, Klaudia;
Strzalka, Wojciech

Publication type:

Article

Crystal structure of an anti-CRISPR protein, AcrIIA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 485, doi. 10.1093/nar/gkx1181

By:

Ka, Donghyun;
An, So Young;
Suh, Jeong-Yong;
Bae, Euiyoung

Publication type:

Article

Human cancer tissues exhibit reduced A-to-I editing of miRNAs coupled with elevated editing of their targets.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 71, doi. 10.1093/nar/gkx1176

By:

Pinto, Yishay;
Buchumenski, Ilana;
Levanon, Erez Y;
Eisenberg, Eli

Publication type:

Article

Translation can affect the antisense activity of RNase H1-dependent oligonucleotides targeting mRNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 293, doi. 10.1093/nar/gkx1174

By:

Liang, Xue-Hai;
Nichols, Joshua G;
Sun, Hong;
Crooke, Stanley T

Publication type:

Article

Separase prevents genomic instability by controlling replication fork speed.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 267, doi. 10.1093/nar/gkx1172

By:

Cucco, Francesco;
Palumbo, Elisa;
Camerini, Serena;
D'Alessio, Barbara;
Quarantotti, Valentina;
Casella, Maria Luisa;
Rizzo, Ilaria Maria;
Cukrov, Dubravka;
Delia, Domenico;
Russo, Antonella

Publication type:

Article

Crystal structure of NucB, a biofilm-degrading endonuclease.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 473, doi. 10.1093/nar/gkx1170

By:

Baslé, Arnaud;
Hewitt, Lorraine;
Koh, Alan;
Lamb, Heather K;
Thompson, Paul;
Burgess, J Grant;
Hall, Michael J;
Hawkins, Alastair R;
Murray, Heath;
Lewis, Richard J

Publication type:

Article

Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 54, doi. 10.1093/nar/gkx1166

By:

Ahmad, Shandar;
Prathipati, Philip;
Tripathi, Lokesh P;
Chen, Yi-An;
Arya, Ajay;
Murakami, Yoichi;
Mizuguchi, Kenji

Publication type:

Article

Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 456, doi. 10.1093/nar/gkx1164

By:

Casino, Patricia;
Miguel-Romero, Laura;
Huesa, Juanjo;
García, Pablo;
García-del Portillo, Francisco;
Marina, Alberto

Publication type:

Article

Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 442, doi. 10.1093/nar/gkx1163

By:

Ejaz, Anam;
Ordonez, Heather;
Jacewicz, Agata;
Ferrao, Ryan;
Shuman, Stewart

Publication type:

Article

A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 431, doi. 10.1093/nar/gkx1162

By:

Ooi, Wei-Yang;
Murayama, Yuko;
Mekler, Vladimir;
Minakhin, Leonid;
Severinov, Konstantin;
Yokoyama, Shigeyuki;
Sekine, Shun-ichi

Publication type:

Article

Designer tRNAs for efficient incorporation of non-canonical amino acids by the pyrrolysine system in mammalian cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx1156

By:

Serfling, Robert;
Lorenz, Christian;
Etzel, Maja;
Schicht, Gerda;
Böttke, Thore;
Mörl, Mario;
Coin, Irene

Publication type:

Article

Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 421, doi. 10.1093/nar/gkx1151

By:

Klein, Brianna J;
Ahmad, Salar;
Vann, Kendra R;
Andrews, Forest H;
Mayo, Zachary A;
Bourriquen, Gaelle;
Bridgers, Joseph B;
Zhang, Jinyong;
Strahl, Brian D;
Côté, Jacques

Publication type:

Article

Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 11, doi. 10.1093/nar/gkx1150

By:

Wu, Li;
Gingery, Mari;
Abebe, Michael;
Arambula, Diego;
Czornyj, Elizabeth;
Handa, Sumit;
Khan, Hamza;
Liu, Minghsun;
Pohlschroder, Mechthild;
Shaw, Kharissa L

Publication type:

Article

Mechanism of formation of a toroid around DNA by the mismatch sensor protein.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 256, doi. 10.1093/nar/gkx1149

By:

Nirwal, Shivlee;
Kulkarni, Dhananjaya S;
Sharma, Amit;
Rao, Desirazu N;
Nair, Deepak T

Publication type:

Article

Novel structural features drive DNA binding properties of Cmr, a CRP family protein in TB complex mycobacteria.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 403, doi. 10.1093/nar/gkx1148

By:

Ranganathan, Sridevi;
Cheung, Jonah;
Cassidy, Michael;
Ginter, Christopher;
Pata, Janice D;
McDonough, Kathleen A

Publication type:

Article

DNA polymerase beta participates in DNA End-joining.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 242, doi. 10.1093/nar/gkx1147

By:

Ray, Sreerupa;
Breuer, Gregory;
DeVeaux, Michelle;
Zelterman, Daniel;
Bindra, Ranjit;
Sweasy, Joann B

Publication type:

Article

Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 362, doi. 10.1093/nar/gkx1120

By:

Bohn, Jennifer A;
Van Etten, Jamie L;
Schagat, Trista L;
Bowman, Brittany M;
McEachin, Richard C;
Freddolino, Peter L;
Goldstrohm, Aaron C

Publication type:

Article

The initiation, propagation and dynamics of CRISPR-SpyCas9 R-loop complex.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 350, doi. 10.1093/nar/gkx1117

By:

Zeng, Yan;
Cui, Yang;
Zhang, Yong;
Zhang, Yanruo;
Liang, Meng;
Chen, Hui;
Lan, Jie;
Song, Guangtao;
Lou, Jizhong

Publication type:

Article

C/EBPβ mediates RNA polymerase III-driven transcription of oncomiR-138 in malignant gliomas.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 336, doi. 10.1093/nar/gkx1105

By:

Di Pascale, Federica;
Nama, Srikanth;
Muhuri, Manish;
Quah, Shan;
Ismail, Hisyam M;
Chan, Xin Hui Derryn;
Sundaram, Gopinath M;
Ramalingam, Rajkumar;
Burke, Brian;
Sampath, Prabha

Publication type:

Article

The human papillomavirus DNA helicase E1 binds, stimulates, and confers processivity to cellular DNA polymerase epsilon.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 229, doi. 10.1093/nar/gkx1103

By:

Chojnacki, Michaelle;
Melendy, Thomas

Publication type:

Article

The intrinsically disordered N-terminal arm of the brome mosaic virus coat protein specifically recognizes the RNA motif that directs the initiation of viral RNA replication.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 324, doi. 10.1093/nar/gkx1087

By:

Jacobs, Alexander;
Hoover, Haley;
Smith, Edward;
Clemmer, David E;
Kim, Chul-Hyun;
Kao, C Cheng

Publication type:

Article

Analysis of the natively unstructured RNA/protein-recognition core in the Escherichia coli RNA degradosome and its interactions with regulatory RNA/Hfq complexes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 387, doi. 10.1093/nar/gkx1083

By:

Bruce, Heather A;
Du, Dijun;
Matak-Vinkovic, Dijana;
Bandyra, Katarzyna J;
Broadhurst, R William;
Martin, Esther;
Sobott, Frank;
Shkumatov, Alexander V;
Luisi, Ben F

Publication type:

Article

Modeling RNA secondary structure folding ensembles using SHAPE mapping data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 314, doi. 10.1093/nar/gkx1057

By:

Spasic, Aleksandar;
Assmann, Sarah M;
Bevilacqua, Philip C;
Mathews, David H

Publication type:

Article

Heme promotes transcriptional and demethylase activities of Gis1, a member of the histone demethylase JMJD2/KDM4 family.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 215, doi. 10.1093/nar/gkx1051

By:

Lal, Sneha;
Comer, Jonathan M;
Konduri, Purna C;
Shah, Ajit;
Wang, Tianyuan;
Lewis, Anthony;
Shoffner, Grant;
Guo, Feng;
Zhang, Li

Publication type:

Article

Conventional and pioneer modes of glucocorticoid receptor interaction with enhancer chromatin in vivo.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 203, doi. 10.1093/nar/gkx1044

By:

Johnson, Thomas A;
Chereji, Răzvan V;
Stavreva, Diana A;
Morris, Stephanie A;
Hager, Gordon L;
Clark, David J

Publication type:

Article

Regulation of transcriptional silencing and chromodomain protein localization at centromeric heterochromatin by histone H3 tyrosine 41 phosphorylation in fission yeast.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 189, doi. 10.1093/nar/gkx1010

By:

Ren, Bingbing;
Tan, Hwei Ling;
Nguyen, Thi Thuy Trang;
Sayed, Ahmed Mahmoud Mohammed;
Li, Ying;
Mok, Yu-Keung;
Yang, Henry;
Chen, Ee Sin

Publication type:

Article

Incorporation of aptamers in the terminal loop of shRNAs yields an effective and novel combinatorial targeting strategy.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx980

By:

Pang, Ka Ming;
Castanotto, Daniela;
Li, Haitang;
Scherer, Lisa;
Rossi, John J

Publication type:

Article

panX: pan-genome analysis and exploration.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx977

By:

Ding, Wei;
Baumdicker, Franz;
Neher, Richard A

Publication type:

Article

Dynamic site-specific recruitment of RBP2 by pocket protein p130 modulates H3K4 methylation on E2F-responsive promoters.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 174, doi. 10.1093/nar/gkx961

By:

Zargar, Zaffer Ullah;
Kimidi, Mallikharjuna Rao;
Tyagi, Shweta

Publication type:

Article

Small RNA-mediated Cry toxin silencing allows Bacillus thuringiensis to evade Caenorhabditis elegans avoidance behavioral defenses.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 159, doi. 10.1093/nar/gkx959

By:

Peng, Donghai;
Luo, Xiaoxia;
Zhang, Ni;
Guo, Suxia;
Zheng, Jinshui;
Chen, Ling;
Sun, Ming

Publication type:

Article

Snail1 transcription factor controls telomere transcription and integrity.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 146, doi. 10.1093/nar/gkx958

By:

Mazzolini, Rocco;
Gonzàlez, Núria;
Garcia-Garijo, Andrea;
Millanes-Romero, Alba;
Peiró, Sandra;
Smith, Susan;
García de Herreros, Antonio;
Canudas, Sílvia

Publication type:

Article

Modulation of extracytoplasmic function (ECF) sigma factor promoter selectivity by spacer region sequence.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 134, doi. 10.1093/nar/gkx953

By:

Gaballa, Ahmed;
Guariglia-Oropeza, Veronica;
Dürr, Franziska;
Butcher, Bronwyn G;
Chen, Albert Y;
Chandrangsu, Pete;
Helmann, John D

Publication type:

Article

The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 120, doi. 10.1093/nar/gkx951

By:

Tiana, Maria;
Acosta-Iborra, Barbara;
Puente-Santamaría, Laura;
Hernansanz-Agustin, Pablo;
Worsley-Hunt, Rebecca;
Masson, Norma;
García-Rio, Francisco;
Mole, David;
Ratcliffe, Peter;
Wasserman, Wyeth W

Publication type:

Article

Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx946

By:

Soares, Ricardo J;
Maglieri, Giulia;
Gutschner, Tony;
Diederichs, Sven;
Lund, Anders H;
Nielsen, Boye S;
Holmstrøm, Kim

Publication type:

Article

Polysome-profiling in small tissue samples.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx940

By:

Liang, Shuo;
Bellato, Hermano Martins;
Lorent, Julie;
Lupinacci, Fernanda C S;
Oertlin, Christian;
van Hoef, Vincent;
Andrade, Victor P;
Roffé, Martín;
Masvidal, Laia;
Hajj, Glaucia N M

Publication type:

Article

Translational co-regulation of a ligand and inhibitor by a conserved RNA element.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 104, doi. 10.1093/nar/gkx938

By:

Zaucker, Andreas;
Nagorska, Agnieszka;
Kumari, Pooja;
Hecker, Nikolai;
Wang, Yin;
Huang, Sizhou;
Cooper, Ledean;
Sivashanmugam, Lavanya;
VijayKumar, Shruthi;
Brosens, Jan

Publication type:

Article

Nanoscale dynamics of centromere nucleosomes and the critical roles of CENP-A.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 94, doi. 10.1093/nar/gkx933

By:

Stumme-Diers, Micah P;
Banerjee, Siddhartha;
Hashemi, Mohtadin;
Sun, Zhiqiang;
Lyubchenko, Yuri L

Publication type:

Article

Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx905

By:

Kuang, Zheng;
Ji, Zhicheng;
Boeke, Jef D;
Ji, Hongkai

Publication type:

Article

Detection of expanded RNA repeats using thermostable group II intron reverse transcriptase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 1, p. 1, doi. 10.1093/nar/gkx867

By:

Carrell, Samuel T;
Tang, Zhenzhi;
Mohr, Sabine;
Lambowitz, Alan M;
Thornton, Charles A

Publication type:

Article