Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 7

Results: 63

Erratum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 7, p. 4278, doi. 10.1093/nar/gkw1269
Publication type:: Article

Use it or lose it: citations predict the continued online availability of published bioinformatics resources.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3627, doi. 10.1093/nar/gkx182

By:

Wren, Jonathan D.;
Georgescu, Constantin;
Giles, Cory B.;
Hennessey, Jason

Publication type:

Article

Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3663, doi. 10.1093/nar/gkx172

By:

Sauerwald, Natalie;
She Zhang;
Kingsford, Carl;
Bahar, Ivet

Publication type:

Article

Iron mediates catalysis of nucleic acid processing enzymes: support for Fe(II) as a cofactor before the great oxidation event.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3634, doi. 10.1093/nar/gkx171

By:

Okafor, C. Denise;
Lanier, Kathryn A.;
Petrov, Anton S.;
Athavale, Shreyas S.;
Bowman, Jessica C.;
Hud, Nicholas V.;
Williams, Loren Dean

Publication type:

Article

Handcuffing reversal is facilitated by proteases and replication initiator monomers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3953, doi. 10.1093/nar/gkx166

By:

Bury, Katarzyna;
Wegrzyn, Katarzyna;
Konieczny, Igor

Publication type:

Article

Antibiotics trigger initiation of SCC mectransfer by inducing SOS responses.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3944, doi. 10.1093/nar/gkx153

By:

Pilong Liu;
Zhaowei Wu;
Huping Xue;
Xin Zhao

Publication type:

Article

Conformational polymorphism or structural invariance in DNA photoinduced lesions: implications for repair rates.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3654, doi. 10.1093/nar/gkx148

By:

Dehez, François;
Gattuso, Hugo;
Bignon, Emmanuelle;
Morell, Christophe;
Dumont, Elise;
Monari, Antonio

Publication type:

Article

Consecutive non-natural PZ nucleobase pairs in DNA impact helical structure as seen in 50 µs molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3643, doi. 10.1093/nar/gkx144

By:

Molt Jr, Robert W.;
Georgiadis, Millie M.;
Richards, Nigel G. J.

Publication type:

Article

The impact of base stacking on the conformations and electrostatics of single-stranded DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3932, doi. 10.1093/nar/gkx140

By:

Plumridge, Alex;
Meisburger, Steve P.;
Andresen, Kurt;
Pollack, Lois

Publication type:

Article

Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3922, doi. 10.1093/nar/gkx124

By:

So Nakagawa;
Yoshihito Niimura;
Takashi Gojobori

Publication type:

Article

Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4269, doi. 10.1093/nar/gkx092

By:

Pasi, Marco;
Zakrzewska, Krystyna;
Maddocks, John H.;
Lavery, Richard

Publication type:

Article

Tankyrase1-mediated poly(ADP-ribosyl)ation of TRF1 maintains cell survival after telomeric DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3906, doi. 10.1093/nar/gkx083

By:

Lu Yang;
Luxi Sun;
Yaqun Teng;
Hao Chen;
Ying Gao;
Levine, Arthur S.;
Satoshi Nakajima;
Li Lan

Publication type:

Article

Dynamic assembly of Hda and the sliding clamp in the regulation of replication licensing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3888, doi. 10.1093/nar/gkx081

By:

Jin S. Kim;
Nanfara, Michael T.;
Sundari Chodavarapu;
Kyeong S. Jin;
Babu, Vignesh M. P.;
Ghazy, Mohamed A.;
Scisung Chung;
Kaguni, Jon M.;
Sutton, Mark D.;
Yunje Cho

Publication type:

Article

A thermostable D-polymerase for mirror-image PCR.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3997, doi. 10.1093/nar/gkx079

By:

Pech, Andreas;
Achenbach, John;
Jahnz, Michael;
Schülzchen, Simone;
Jarosch, Florian;
Bordusa, Frank;
Klussmann, Sven

Publication type:

Article

Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3985, doi. 10.1093/nar/gkx077

By:

Mohler, Kyle;
Mann, Rebecca;
Bullwinkle, Tammy J.;
Hopkins, Kyle;
Lin Hwang;
Reynolds, Noah M.;
Gassaway, Brandon;
Aerni, Hans-Rudolf;
Rinehart, Jesse;
Polymenis, Michael;
Faull, Kym;
Ibba, Michael

Publication type:

Article

The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3875, doi. 10.1093/nar/gkx074

By:

Sanders, Kelly;
Chia-Liang Lin;
Smith, Abigail J.;
Cronin, Nora;
Fisher, Gemma;
Eftychidis, Vasileios;
McGlynn, Peter;
Savery, Nigel J.;
Wigley, Dale B.;
Dillingham, Mark S.

Publication type:

Article

Arm-specific cleavage and mutation during reverse transcription of 2',5'-branched RNA by Moloney murine leukemia virus reverse transcriptase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3967, doi. 10.1093/nar/gkx073

By:

Döring, Jessica;
Hurek, Thomas

Publication type:

Article

Regulation of telomere metabolism by the RNA processing protein Xrn1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3860, doi. 10.1093/nar/gkx072

By:

Cesena, Daniele;
Cassani, Corinne;
Rizzo, Emanuela;
Lisby, Michael;
Bonetti, Diego;
Longhese, Maria Pia

Publication type:

Article

Measurements of translation initiation from all 64 codons in E. coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3615, doi. 10.1093/nar/gkx070

By:

Hecht, Ariel;
Glasgow, Jeff;
Jaschke, Paul R.;
Bawazer, Lukmaan A.;
Munson, Matthew S.;
Cochran, Jennifer R.;
Endy, Drew;
Salit, Marc

Publication type:

Article

WRN is recruited to damaged telomeres via its RQC domain and tankyrase1-mediated poly-ADP-ribosylation of TRF1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3844, doi. 10.1093/nar/gkx065

By:

Luxi Sun;
Satoshi Nakajima;
Yaqun Teng;
Hao Chen;
Lu Yang;
Xiukai Chen;
Boya Gao;
Levine, Arthur S.;
Li Lan

Publication type:

Article

Recognition but no repair of abasic site in single-stranded DNA by human ribosomal uS3 protein residing within intact 40S subunit.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3833, doi. 10.1093/nar/gkx052

By:

Grosheva, Anastasia S.;
Zharkov, Dmitry O.;
Stahl, Joachim;
Gopanenko, Alexander V.;
Tupikin, Alexey E.;
Kabilov, Marsel R.;
Graifer, Dmitri M.;
Karpova, Galina G.

Publication type:

Article

DNA polymerase β uses its lyase domain in a processive search for DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3822, doi. 10.1093/nar/gkx047

By:

Howard, Michael J.;
Rodriguez, Yesenia;
Wilson, Samuel H.

Publication type:

Article

RNA binding and chaperone activity of the E. coli cold-shock protein CspA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4255, doi. 10.1093/nar/gkx044

By:

Rennella, Enrico;
Sára, Tomáš;
Juen, Michael;
Wunderlich, Christoph;
Imbert, Lionel;
Solyom, Zsofia;
Favier, Adrien;
Ayala, Isabel;
Weinhäupl, Katharina;
Schanda, Paul;
Konrat, Robert;
Kreutz, Christoph;
Brutscher, Bernhard

Publication type:

Article

Deletion of the rnlgene encoding a nick-sealing RNA ligase sensitizes Deinococcus radioduransto ionizing radiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3812, doi. 10.1093/nar/gkx038

By:

Schmier, Brad J.;
Xinguo Chen;
Wolin, Sandra;
Shuman, Stewart

Publication type:

Article

Structural basis of operator sites recognition and effector binding in the TetR family transcription regulator FadR.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4244, doi. 10.1093/nar/gkx009

By:

Hyun Ku Yeo;
Young Woo Park;
Jae Young Lee

Publication type:

Article

Insights into the RecQ helicase mechanism revealed by the structure of the helicase domain of human RECQL5.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4231, doi. 10.1093/nar/gkw1362

By:

Newman, Joseph A.;
Aitkenhead, Hazel;
Savitsky, Pavel;
Gileadi, Opher

Publication type:

Article

How accurate are accurate force-fields for B-DNA?

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4217, doi. 10.1093/nar/gkw1355

By:

Dans, Pablo D.;
Ivani, Ivan;
Hospital, Adam;
Portella, Guillem;
González, Carlos;
Orozco, Modesto

Publication type:

Article

The histone demethylase PHF8 is a molecular safeguard of the IFNγ response.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3800, doi. 10.1093/nar/gkw1346

By:

Asensio-Juan, Elena;
Fueyo, Raquel;
Pappa, Stella;
Iacobucci, Simona;
Badosa, Carmen;
Lois, Sergi;
Balada, Miriam;
Bosch-Presegué, Laia;
Vaquero, Alex;
Gutiérrez, Sara;
Caelles, Carme;
Gallego, Carme;
de la Cruz, Xavier;
Martínez-Balbás, Marian A.

Publication type:

Article

A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3725, doi. 10.1093/nar/gkw1331

By:

Rodionova, Irina A.;
Vetting, Matthew W.;
Xiaoqing Li;
Almo, Steven C.;
Osterman, Andrei L.;
Rodionov, Dmitry A.

Publication type:

Article

Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3777, doi. 10.1093/nar/gkw1330

By:

Zabet, Nicolae Radu;
Catoni, Marco;
Prischi, Filippo;
Paszkowski, Jerzy

Publication type:

Article

PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3767, doi. 10.1093/nar/gkw1320

By:

Gibson, Matthew D.;
Gatchalian, Jovylyn;
Slater, Andrew;
Kutateladze, Tatiana G.;
Poirier, Michael G.

Publication type:

Article

Succession of splicing regulatory elements determines cryptic 5'ss functionality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4202, doi. 10.1093/nar/gkw1317

By:

Brillen, Anna-Lena;
Schöneweis, Katrin;
Walotka, Lara;
Hartmann, Linda;
Müller, Lisa;
Ptok, Johannes;
Kaisers, Wolfgang;
Poschmann, Gereon;
Stühler, Kai;
Buratti, Emanuele;
Theiss, Stephan;
Schaal, Heiner

Publication type:

Article

ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4189, doi. 10.1093/nar/gkw1304

By:

Anantharaman, Aparna;
Tripathi, Vidisha;
Khan, Abid;
Je-Hyun Yoon;
Singh, Deepak K.;
Gholamalamdari, Omid;
Shuomeng Guang;
Ohlson, Johan;
Wahlstedt, Helene;
Öhman, Marie;
Jantsch, Michael F.;
Conrad, Nicholas K.;
Jian Ma;
Gorospe, Myriam;
Prasanth, Supriya G.;
Prasanth, Kannanganattu V.

Publication type:

Article

Expression of the eRF1 translation termination factor is controlled by an autoregulatory circuit involving readthrough and nonsense-mediated decay in plants.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4174, doi. 10.1093/nar/gkw1303

By:

Nyikó, Tünde;
Auber, Andor;
Szabadkai, Levente;
Benkovics, Anna;
Auth, Mariann;
Mérai, Zsuzsanna;
Kerényi, Zoltán;
Dinnyés, Andrea;
Nagy, Ferenc;
Silhavy, Dániel

Publication type:

Article

Erratum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 7, p. 4279, doi. 10.1093/nar/gkw1299
Publication type:: Article

INO80 represses osmostress induced gene expression by resetting promoter proximal nucleosomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3752, doi. 10.1093/nar/gkw1292

By:

Klopf, Eva;
Schmidt, Heiko A.;
Clauder-Müunster, Sandra;
Steinmetz, Lars M.;
Schüller, Christoph

Publication type:

Article

Positive feedback loop mediated by protein phosphatase 1α mobilization of P-TEFb and basal CDK1 drives androgen receptor in prostate cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3738, doi. 10.1093/nar/gkw1291

By:

Xiaming Liu;
Yanfei Gao;
HuiHui Ye;
Gerrin, Sean;
Fen Ma;
Yiming Wu;
Tengfei Zhang;
Russo, Joshua;
Changmeng Cai;
Xin Yuan;
Jihong Liu;
Shaoyong Chen;
Balk, Steven P.

Publication type:

Article

An optimized, broadly applicable piggyBac transposon induction system.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 1, doi. 10.1093/nar/gkw1290

By:

Zongtai Qi;
Wilkinson, Michael Nathaniel;
Xuhua Chen;
Sankararaman, Sumithra;
Mayhew, David;
Mitra, Robi David

Publication type:

Article

Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4158, doi. 10.1093/nar/gkw1289

By:

Eckenfelder, Agathe;
Ségéral, Emmanuel;
Pinzón, Natalia;
Ulveling, Damien;
Amadori, Céline;
Charpentier, Marine;
Nidelet, Sabine;
Concordet, Jean-Paul;
Zagury, Jean-François;
Paillart, Jean-Christophe;
Berlioz-Torrent, Clarisse;
Seitz, Hervé;
Emiliani, Stéphane;
Gallois-Montbrun, Sarah

Publication type:

Article

The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3724, doi. 10.1093/nar/gkw1288

By:

Orlova, Natalia;
Gerding, Matthew;
Ivashkiv, Olha;
Olinares, Paul Dominic B.;
Chait, Brian T.;
Waldor, Matthew K.;
Jeruzalmi, David

Publication type:

Article

MicroRNA-202 maintains spermatogonial stem cells by inhibiting cell cycle regulators and RNA binding proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4142, doi. 10.1093/nar/gkw1287

By:

Jian Chen;
Tanxi Cai;
Chunwei Zheng;
Xiwen Lin;
Guojun Wang;
Shangying Liao;
Xiuxia Wang;
Haiyun Gan;
Daoqin Zhang;
Xiangjing Hu;
Si Wang;
Zhen Li;
Yanmin Feng;
Fuquan Yang;
Chunsheng Han

Publication type:

Article

Efficient DNA binding of NF-κB requires the chaperone-like function of NPM1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3707, doi. 10.1093/nar/gkw1285

By:

Jianhuang Lin;
Mitsuyasu Kato;
Kyosuke Nagata;
Mitsuru Okuwaki

Publication type:

Article

Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4131, doi. 10.1093/nar/gkw1284

By:

Zangari, Joséphine;
Ilie, Marius;
Rouaud, Florian;
Signetti1, Laurie;
Ohanna, Mickaël;
Didier, Robin;
Roméo, Barnabé;
Goldoni, Dana;
Nottet, Nicolas;
Staedel, Cathy;
Gal, Jocelyn;
Mari, Bernard;
Mograbi, Baharia;
Hofman, Paul;
Brest, Patrick

Publication type:

Article

Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3693, doi. 10.1093/nar/gkw1283

By:

Bojcsuk, Dóora;
Nagy, Gergely;
Balint, Balint L.

Publication type:

Article

KDM4B/JMJD2B is a p53 target gene that modulates the amplitude of p53 response after DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 3674, doi. 10.1093/nar/gkw1281

By:

Castellini, Laura;
Eui Jung Moon;
Razorenova, Olga V.;
Krieg, Adam J.;
von Eyben, Rie;
Giaccia, Amato J.

Publication type:

Article

SLICE: determining cell differentiation and lineage based on single cell entropy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 1, doi. 10.1093/nar/gkw1278

By:

Minzhe Guo;
Erik L. Bao;
Wagner, Michael;
Whitsett, Jeffrey A.;
Yan Xu

Publication type:

Article

Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2AS4 splicing control.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4120, doi. 10.1093/nar/gkw1277

By:

Danilenko, Marina;
Dalgliesh, Caroline;
Pagliarini, Vittoria;
Naro, Chiara;
Ehrmann, Ingrid;
Feracci, Mikael;
Kheirollahi-Chadegani, Mahsa;
Tyson-Capper, Alison;
Clowry, Gavin J.;
Fort, Philippe;
Dominguez, Cyril;
Sette, Claudio;
Elliott, David J.

Publication type:

Article

Flexible model-based clustering of mixed binary and continuous data: application to genetic regulation and cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 1, doi. 10.1093/nar/gkw1270

By:

Abidin, Fatin N. Zainul;
Westhead, David R.

Publication type:

Article

Applicability of a computational design approach for synthetic riboswitches.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 4108, doi. 10.1093/nar/gkw1267

By:

Domin, Gesine;
Findeiß, Sven;
Wachsmuth, Manja;
Will, Sebastian;
Stadler, Peter F.;
Mörl, Mario

Publication type:

Article

pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 7, p. 1, doi. 10.1093/nar/gkw1261

By:

Xiaolin Wei;
Zhichao Xu;
Guixing Wang;
Jilun Hou;
Xiaopeng Ma;
Haijin Liu;
Jiadong Liu;
Bo Chen;
Meizhong Luo;
Bingyan Xie;
Ruiqiang Li;
Jue Ruan;
Xiao Liu

Publication type:

Article