Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 6

Results: 64

A critical assessment of topologically associating domain prediction tools.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2994, doi. 10.1093/nar/gkx145

By:

Dali, Rola;
Blanchette, Mathieu

Publication type:

Article

The Schizosaccharomyces pombe PPR protein Ppr10 associates with a novel protein Mpa1 and acts as a mitochondrial translational activator.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3323, doi. 10.1093/nar/gkx127

By:

Yirong Wang;
Jianhua Yan;
Qingzhen Zhang;
Xuting Ma;
Juan Zhang;
Minghui Su;
Xiaojun Wang;
Ying Huang

Publication type:

Article

DNA nanostructures constructed with multi-stranded motifs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3606, doi. 10.1093/nar/gkx121

By:

Donglei Yang;
Zhenyu Tan;
Yongli Mi;
Wei, Bryan

Publication type:

Article

Molecular mechanism governing ratio-dependent transcription regulation in the ccdAB operon.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2937, doi. 10.1093/nar/gkx108

By:

Vandervelde, Alexandra;
Drobnak, Igor;
Hadži, San;
Sterckx, Yann G.-J.;
Welte, Thomas;
De Greve, Henri;
Charlier, Daniel;
Efremov, Rouslan;
Loris, Remy;
Jurij Lah

Publication type:

Article

Translational compensation of gene copy number alterations by aneuploidy in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2986, doi. 10.1093/nar/gkx106

By:

Zhenguo Zhang;
Presgraves, Daven C.

Publication type:

Article

Allele-specific quantitative proteomics unravels molecular mechanisms modulated by cis-regulatory PPARG locus variation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3266, doi. 10.1093/nar/gkx105

By:

Heekyoung Lee;
Kun Qian;
von Toerne, Christine;
Hoerburger, Lena;
Claussnitzer, Melina;
Hoffmann, Christoph;
Glunk, Viktoria;
Wahl, Simone;
Breier, Michaela;
Eck, Franziska;
Jafari, Leili;
Molnos, Sophie;
Grallert, Harald;
Dahlman, Ingrid;
Arner, Peter;
Brunner, Cornelia;
Hauner, Hans;
Hauck, Stefanie M.;
Laumen, Helmut

Publication type:

Article

Rad6--Bre1-mediated H2B ubiquitination regulates telomere replication by promoting telomere-end resection.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3308, doi. 10.1093/nar/gkx101

By:

Zhenfang Wu;
Jun Liu;
Qiong-Di Zhang;
De-Kang Lv;
Nian-Feng Wu;
Jin-Qiu Zhou

Publication type:

Article

Spacer-length DNA intermediates are associated with Cas1 in cells undergoing primed CRISPR adaptation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3297, doi. 10.1093/nar/gkx097

By:

Musharova, Olga;
Klimuk, Evgeny;
Datsenko, Kirill A.;
Metlitskaya, Anastasia;
Logacheva, Maria;
Semenova, Ekaterina;
Severinov, Konstantin;
Savitskaya, Ekaterina

Publication type:

Article

Identification of multiple genomic DNA sequences which form i-motif structures at neutral pH.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2951, doi. 10.1093/nar/gkx090

By:

Wright, Elisé P.;
Huppert, Julian L.;
Waller, Zoë A. E.

Publication type:

Article

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3253, doi. 10.1093/nar/gkx087

By:

Reimegård, Johan;
Kundu, Snehangshu;
Pendle, Ali;
Irish, Vivian F.;
Shaw, Peter;
Nakayama, Naomi;
Sundström, Jens F.;
Emanuelsson, Olof

Publication type:

Article

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2973, doi. 10.1093/nar/gkx082

By:

Telonis, Aristeidis G.;
Magee, Rogan;
Loher, Phillipe;
Chervoneva, Inna;
Londin, Eric;
Rigoutsos, Isidore

Publication type:

Article

CNBP acts as a key transcriptional regulator of sustained expression of interleukin-6.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3280, doi. 10.1093/nar/gkx071

By:

Eunhye Lee;
Taeyun A. Lee;
Ji Hyun Kim;
Areum Park;
Eun A. Ra;
Sujin Kang;
Hyun jin Choi;
Junhee L. Choi;
Hyunbin D. Huh;
Ji Eun Lee;
Sungwook Lee;
Boyoun Park

Publication type:

Article

DNA target recognition domains in the Type I restriction and modi?cation systems of Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3395, doi. 10.1093/nar/gkx067

By:

Cooper, Laurie P.;
Roberts, Gareth A.;
White, John H.;
Luyten, Yvette A.;
Bower, Edward K. M.;
Morgan, Richard D.;
Roberts, Richard J.;
Lindsay, Jodi A.;
Dryden, David T. F.

Publication type:

Article

Cytidine deaminase efficiency of the lentiviral viral restriction factor APOBEC3C correlates with dimerization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3378, doi. 10.1093/nar/gkx066

By:

Adolph, Madison B.;
Ara, Anjuman;
Yuqing Feng;
Wittkopp, Cristina J.;
Emerman, Michael;
Fraser, James S.;
Chelico, Linda

Publication type:

Article

DNA editing in DNA/RNA hybrids by adenosine deaminases that act on RNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3369, doi. 10.1093/nar/gkx050

By:

Yuxuan Zheng;
Lorenzo, Claire;
Beal, Peter A.

Publication type:

Article

An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3353, doi. 10.1093/nar/gkx043

By:

Reich, Stefan;
Guilligay, Delphine;
Cusack, Stephen

Publication type:

Article

A novel role for transcription-coupled nucleotide excision repair for the in vivo repair of 3,N<sup>4</sup>-ethenocytosine.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3242, doi. 10.1093/nar/gkx015

By:

Chaim, Isaac A.;
Gardner, Alycia;
Jie Wu;
Teruaki Iyama;
Wilson III, David M.;
Samson, Leona D.

Publication type:

Article

Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3341, doi. 10.1093/nar/gkx004

By:

Figiel, Małgorzata;
Krepl, Miroslav;
Poznański, Jarosław;
Gołąb, Agnieszka;
Šponer, Jiří;
Nowotny, Marcin

Publication type:

Article

Self-cytoplasmic DNA upregulates the mutator enzyme APOBEC3A leading to chromosomal DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3231, doi. 10.1093/nar/gkx001

By:

Suspène, Rodolphe;
Mussil, Bianka;
Laude, Hélène;
Caval, Vincent;
Berry, Noémie;
Bouzidi, Mohamed S.;
Thiers, Valérie;
Wain-Hobson, Simon;
Vartanian, Jean-Pierre

Publication type:

Article

Cdc45-induced loading of human RPA onto single-stranded DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3217, doi. 10.1093/nar/gkw1364

By:

Szambowska, Anna;
Tessmer, Ingrid;
Prus, Piotr;
Schlott, Bernhard;
Pospiech, Helmut;
Grosse, Frank

Publication type:

Article

Multimerization properties of PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3204, doi. 10.1093/nar/gkw1359

By:

Dubois, Emeline;
Mathy, Nathalie;
Régnier, Vinciane;
Bischerour, Julien;
Baudry, Céline;
Trouslard, Raphaëlle;
Bétermier, Mireille

Publication type:

Article

The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3591, doi. 10.1093/nar/gkw1356

By:

Hilbert, Brendan J.;
Hayes, Janelle A.;
Stone, Nicholas P.;
Rui-Gang Xu;
Kelch, Brian A.

Publication type:

Article

Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3580, doi. 10.1093/nar/gkw1354

By:

Rui-Gang Xu;
Jenkins, Huw T.;
Chechik, Maria;
Blagova, Elena V.;
Lopatina, Anna;
Klimuk, Evgeny;
Minakhin, Leonid;
Severinov, Konstantin;
Greive, Sandra J.;
Antson, Alfred A.

Publication type:

Article

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3568, doi. 10.1093/nar/gkw1351

By:

Martinez-Zapien, Denise;
Legrand, Pierre;
McEwen, Alastair G.;
Proux, Florence;
Cragnolini, Tristan;
Pasquali, Samuela;
Dock-Bregeon, Anne-Catherine

Publication type:

Article

Bayesian prediction of RNA translation from ribosome profiling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 2960, doi. 10.1093/nar/gkw1350

By:

Malone, Brandon;
Atanassov, Ilian;
Aeschimann, Florian;
Xinping Li;
Großhans, Helge;
Dieterich, Christoph

Publication type:

Article

A structure--function analysis of the yeast Elg1 protein reveals the importance of PCNA unloading in genome stability maintenance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3189, doi. 10.1093/nar/gkw1348

By:

Shemesh, Keren;
Sebesta, Marek;
Pacesa, Martin;
Sau, Soumitra;
Bronstein, Alex;
Parnas, Oren;
Liefshitz, Batia;
Venclovas, Česlovas;
Krejci, Lumir;
Kupiec, Martin

Publication type:

Article

Nop9 binds the central pseudoknot region of 18S rRNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3559, doi. 10.1093/nar/gkw1323

By:

Bing Wang;
Keqiong Ye

Publication type:

Article

DNA-dependent protease activity of human Spartan facilitates replication of DNA--protein crosslink-containing DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3172, doi. 10.1093/nar/gkw1315

By:

Mórocz, Mónika;
Zsigmond, Eszter;
Tóth, Róbert;
Enyedi, Márton Zs;
Pintér, Lajos;
Haracska, Lajos

Publication type:

Article

Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3547, doi. 10.1093/nar/gkw1310

By:

Tamulaitiene, Giedre;
Jovaisaite, Virginija;
Tamulaitis, Gintautas;
Songailiene, Inga;
Manakova, Elena;
Zaremba, Mindaugas;
Grazulis, Saulius;
Shuang-yong Xu;
Siksnys, Virginijus

Publication type:

Article

Structural insights into RNA duplexes with multiple 2'-5'-linkages.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3537, doi. 10.1093/nar/gkw1307

By:

Fusheng Shen;
Zhipu Luo;
Hehua Liu;
Rui Wang;
Shenglong Zhang;
Jianhua Gan;
Jia Sheng

Publication type:

Article

A three-dimensional ParF meshwork assembles through the nucleoid to mediate plasmid segregation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3158, doi. 10.1093/nar/gkw1302

By:

McLeod, Brett N.;
Allison-Gamble, Gina E.;
Barge, Madhuri T.;
Tonthat, Nam K.;
Schumacher, Maria A.;
Hayes, Finbarr;
Barillà, Daniela

Publication type:

Article

Proximity to AGCT sequences dictates MMR-independent versus MMR-dependent mechanisms for AID-induced mutation via UNG2.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3146, doi. 10.1093/nar/gkw1300

By:

Sanchai Thientosapol, Eddy;
Sharbeen, George;
Lau, K. K. Edwin;
Bosnjak, Daniel;
Durack, Timothy;
Stevanovski, Igor;
Weninger, Wolfgang;
Jolly, Christopher J.

Publication type:

Article

BRD4 promotes p63 and GRHL3 expression downstream of FOXO in mammary epithelial cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3130, doi. 10.1093/nar/gkw1276

By:

Nagarajan, Sankari;
Bedi, Upasana;
Budida, Anusha;
Hamdan, Feda H.;
Mishra, Vivek Kumar;
Najafova, Zeynab;
Wanhua Xie;
Alawi, Malik;
Indenbirken, Daniela;
Knapp, Stefan;
Cheng-Ming Chiang;
Grundhoff, Adam;
Kari, Vijayalakshmi;
Scheel, Christina H.;
Wegwitz, Florian;
Johnsen, Steven A.

Publication type:

Article

Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3116, doi. 10.1093/nar/gkw1273

By:

Archacki, Rafal;
Yatusevich, Ruslan;
Buszewicz, Daniel;
Krzyczmonik, Katarzyna;
Patryn, Jacek;
Iwanicka-Nowicka, Roksana;
Biecek, Przemyslaw;
Wilczynski, Bartek;
Koblowska, Marta;
Jerzmanowski, Andrzej;
Swiezewski, Szymon

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 6, p. 3613, doi. 10.1093/nar/gkw1268
Publication type:: Article

Single-cell profiling reveals that eRNA accumulation at enhancer--promoter loops is not required to sustain transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3017, doi. 10.1093/nar/gkw1220

By:

Rahman, Samir;
Zorca, Cornelia E.;
Traboulsi, Tatiana;
Noutahi, Emmanuel;
Krause, Matthew R.;
Mader, Sylvie;
Zenklusen, Daniel

Publication type:

Article

Non-CpG methylation by DNMT3B facilitates REST binding and gene silencing in developing mouse hearts.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3102, doi. 10.1093/nar/gkw1258

By:

Donghong Zhang;
Bingruo Wu;
Ping Wang;
Yidong Wang;
Pengfei Lu;
Nechiporuk, Tamilla;
Floss, Thomas;
Greally, John M.;
Deyou Zheng;
Bin Zhou

Publication type:

Article

The Drosophila telomere-capping protein Verrocchio binds single-stranded DNA and protects telomeres from DNA damage response.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3068, doi. 10.1093/nar/gkw1244

By:

Cicconi, Alessandro;
Micheli, Emanuela;
Vernì, Fiammetta;
Jackson, Alison;
Gradilla, Ana Citlali;
Cipressa, Francesca;
Raimondo, Domenico;
Bosso, Giuseppe;
Wakefield, James G.;
Ciapponi, Laura;
Cenci, Giovanni;
Gatti, Maurizio;
Cacchione, Stefano;
Raffa, Grazia Daniela

Publication type:

Article

Nucleosome-free DNA regions differentially affect distant communication in chromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3059, doi. 10.1093/nar/gkw1240

By:

Nizovtseva, Ekaterina V.;
Clauvelin, Nicolas;
Todolli, Stefjord;
Polikanov, Yury S.;
Kulaeva, Olga I.;
Wengrzynek, Scott;
Olson, Wilma K.;
Studitsky, Vasily M.

Publication type:

Article

The CSRP2BP histone acetyltransferase drives smooth muscle gene expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3046, doi. 10.1093/nar/gkw1227

By:

Yanlin Ma;
Qi Li;
Ankang Li;
Yunjian Wei;
Ping Long;
Xinxing Jiang;
Fei Sun;
Weiskirchen, Ralf;
Bangyong Wu;
Chao Liang;
Grötzinger, Joachim;
Yanxing Wei;
Wei Yu;
Mercola, Mark;
Yuanhua Huang;
Jun Wang;
Yanhong Yu;
Schwartz, Robert J.

Publication type:

Article

Interplay between H1 and HMGN epigenetically regulates OLIG1&2 expression and oligodendrocyte differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3031, doi. 10.1093/nar/gkw1222

By:

Tao Deng;
Postnikov, Yuri;
Shaofei Zhang;
Garrett, Lillian;
Becker, Lore;
Rácz, Ildikó;
Hölter, Sabine M.;
Wurst, Wolfgang;
Fuchs, Helmut;
Gailus-Durner, Valerie;
de Angelis, Martin Hrabe;
Bustin, Michael

Publication type:

Article

H3K27 acetylation activated-long non-coding RNA CCAT1 affects cell proliferation and migration by regulating SPRY4 and HOXB13 expression in esophageal squamous cell carcinoma.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3086, doi. 10.1093/nar/gkw1247

By:

Erbao Zhang;
Liang Han;
Dandan Yin;
Xuezhi He;
Linzhi Hong;
Xinxin Si;
Mantang Qiu;
Tongpeng Xu;
Wei De;
Lin Xu;
Yongqian Shu;
Jinfei Chen

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 6, p. 3612, doi. 10.1093/nar/gkw1219
Publication type:: Article

σ<sup>38</sup>-dependent promoter-proximal pausing by bacterial RNA polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3006, doi. 10.1093/nar/gkw1213

By:

Petushkov, Ivan;
Esyunina, Daria;
Kulbachinskiy, Andrey

Publication type:

Article

A specific DNA-nanoprobe for tracking the activities of human apurinic/apyrimidinic endonuclease 1 in living cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1205

By:

Junqiu Zhai;
Yibin Liu;
Shan Huang;
Simin Fang;
Meiping Zhao

Publication type:

Article

QSEA--modelling of genome-wide DNA methylation from sequencing enrichment experiments.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1193

By:

Lienhard, Matthias;
Grasse, Sabrina;
Rolff, Jana;
Frese, Steffen;
Schirmer, Uwe;
Becker, Michael;
Börno, Stefan;
Timmermann, Bernd;
Chavez, Lukas;
Sültmann, Holger;
Leschber, Gunda;
Fichtner, Iduna;
Schweiger, Michal R.;
Herwig, Ralf

Publication type:

Article

The combination of direct and paired link graphs can boost repetitive genome assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1191

By:

Wenyu Shi;
Peifeng Ji;
Fangqing Zhao

Publication type:

Article

miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA--target interaction data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1185

By:

Ahadi, Alireza;
Sablok, Gaurav;
Hutvagner, Gyorgy

Publication type:

Article

Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1179

By:

Zefu Lu;
Hofmeister, Brigitte T.;
Vollmers, Christopher;
DuBois, Rebecca M.;
Schmitz, Robert J.

Publication type:

Article

Cloning-independent markerless gene editing in Streptococcus sanguinis: novel insights in type IV pilus biology.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1177

By:

Gurung, Ishwori;
Berry, Jamie-Lee;
Hall, Alexander M. J.;
Pelicic, Vladimir

Publication type:

Article