Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 3

Results: 48

Erratum: Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 3, p. 1567, doi. 10.1093/nar/gkx032
Publication type:: Article

Salt-mediated two-site ligand binding by the cocaine-binding aptamer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1041, doi. 10.1093/nar/gkw1294

By:

Neves, Miguel A. D.;
Slavkovic, Sladjana;
Churcher, Zachary R.;
Johnson, Philip E.

Publication type:

Article

A specific dsRNA-binding protein complex selectively sequesters endogenous inverted-repeat siRNA precursors and inhibits their processing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1330, doi. 10.1093/nar/gkw1264

By:

Montavon, Thomas;
Kwon, Yerim;
Zimmermann, Aude;
Hammann, Philippe;
Vincent, Timothée;
Cognat, Valérie;
Michel, Fabrice;
Dunoyer, Patrice

Publication type:

Article

Restriction glycosylases: involvement of endonuclease activities in the restriction process.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1392, doi. 10.1093/nar/gkw1250

By:

Yingbiao Zhang;
Tomoyuki Matsuzaka;
Hirokazu Yano;
Yoshikazu Furuta;
Toshiaki Nakano;
Ishikawa, Ken;
Masaki Fukuyo;
Noriko Takahashi;
Yutaka Suzuki;
Sumio Sugano;
Hiroshi Ide;
Ichizo Kobayashi

Publication type:

Article

The Borrelia burgdorferi telomere resolvase, ResT, possesses ATP-dependent DNA unwinding activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1319, doi. 10.1093/nar/gkw1243

By:

Shu Hui Huang;
Cozart, McKayla R.;
Hart, Madison A.;
Kobryn, Kerri

Publication type:

Article

RNA helicase DDX19 stabilizes ribosomal elongation and termination complexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1307, doi. 10.1093/nar/gkw1239

By:

Mikhailova, Tatiana;
Shuvalova, Ekaterina;
Ivanov, Alexander;
Susorov, Denis;
Shuvalov, Alexey;
Kolosov, Peter M.;
Alkalaeva, Elena

Publication type:

Article

Stochastic timing in gene expression for simple regulatory strategies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1069, doi. 10.1093/nar/gkw1235

By:

Dal Co, Alma;
Cosentino Lagomarsino, Marco;
Caselle, Michele;
Osella, Matteo

Publication type:

Article

Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1371, doi. 10.1093/nar/gkw1234

By:

Saramago, Margarida;
Peregrina, Alexandra;
Robledo, Marta;
Matos, Rute G.;
Hilker, Rolf;
Serrania, Javier;
Becker, Anke;
Arraiano, Cecilia M.;
Jiménez-Zurdo, José I.

Publication type:

Article

Functional link between DEAH/RHA helicase Prp43 activation and ATP base binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1539, doi. 10.1093/nar/gkw1233

By:

Robert-Paganin, Julien;
Halladjian, Maral;
Blaud, Magali;
Lebaron, Simon;
Delbos, Lila;
Chardon, Florian;
Capeyrou, Régine;
Humbert, Odile;
Henry, Yves;
Henras, Anthony K.;
Réty, Stéphane;
Leulliot, Nicolas

Publication type:

Article

DNA microstructure influences selective binding of small molecules designed to target mixed-site DNA sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1297, doi. 10.1093/nar/gkw1232

By:

Laughlin-Toth, Sarah;
Carter, E. Kathleen;
Ivanov, Ivaylo;
Wilson, W. David

Publication type:

Article

The impact of recent improvements in cryo-electron microscopy technology on the understanding of bacterial ribosome assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1027, doi. 10.1093/nar/gkw1231

By:

Razi, Aida;
Britton, Robert A.;
Ortega, Joaquin

Publication type:

Article

Biochemical characterization of the helicase Sen1 provides new insights into the mechanisms of non-coding transcription termination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1355, doi. 10.1093/nar/gkw1230

By:

Zhong Han;
Libri, Domenico;
Porrua, Odil

Publication type:

Article

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1553, doi. 10.1093/nar/gkw1226

By:

Woodruff, Lauren B. A.;
Gorochowski, Thomas E.;
Roehner, Nicholas;
Mikkelsen, Tarjei S.;
Densmore, Douglas;
Gordon, D. Benjamin;
Nicol, Robert;
Voigt, Christopher A.

Publication type:

Article

Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1529, doi. 10.1093/nar/gkw1224

By:

Shintaro Aibara;
Gordon, James M. B.;
Riesterer, Anja S.;
McLaughlin, Stephen H.;
Stewart, Murray

Publication type:

Article

Corrigendum: RECQL5 plays co-operative and complementary roles with WRN syndrome helicase.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 3, p. 1566, doi. 10.1093/nar/gkw1216
Publication type:: Article

Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1281, doi. 10.1093/nar/gkw1214

By:

Yang, Jennifer;
Yoshiaki Tanaka;
Seay, Montrell;
Zhen Li;
Jiaqi Jin;
Lana Xia Garmire;
Xun Zhu;
Taylor, Ashley;
Weidong Li;
Euskirchen, Ghia;
Halene, Stephanie;
Kluger, Yuval;
Snyder, Michael P.;
In-Hyun Park;
Xinghua Pan;
Weissman, Sherman Morton

Publication type:

Article

DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1516, doi. 10.1093/nar/gkw1200

By:

Shen, Betty W.;
Heiter, Daniel F.;
Lunnen, Keith D.;
Wilson, Geoffrey G.;
Stoddard, Barry L.

Publication type:

Article

Nucleobase modification by an RNA enzyme.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1345, doi. 10.1093/nar/gkw1199

By:

Poudyal, Raghav R.;
Nguyen, Phuong D. M.;
Lokugamage, Melissa P.;
Callaway, Mackenzie K.;
Gavette, Jesse V.;
Krishnamurthy, Ramanarayanan;
Burke, Donald H.

Publication type:

Article

Predominant role of DNA polymerase eta and p53-dependent translesion synthesis in the survival of ultraviolet-irradiated human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1270, doi. 10.1093/nar/gkw1196

By:

Lerner, Leticia K.;
Francisco, Guilherme;
Soltys, Daniela T.;
Rocha, Clarissa R. R.;
Quinet, Annabel;
Vessoni, Alexandre T.;
Castro, Ligia P.;
David, Taynah I. P.;
Bustos, Silvina O.;
Strauss, Bryan E.;
Gottifredi, Vanesa;
Stary, Anne;
Sarasin, Alain;
Chammas, Roger;
Menck, Carlos F. M.

Publication type:

Article

Disentangling polydispersity in the PCNA-p15<sup>PAF</sup> complex, a disordered, transient and multivalent macromolecular assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1501, doi. 10.1093/nar/gkw1183

By:

Cordeiro, Tiago N.;
Po-chia Chen;
De Biasio, Alfredo;
Sibille, Nathalie;
Blanco, Francisco J.;
Hub, Jochen S.;
Crehuet, Ramon;
Bernadó, Pau

Publication type:

Article

The complex evolutionary history of aminoacyl-tRNA synthetases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1059, doi. 10.1093/nar/gkw1182

By:

Chaliotis, Anargyros;
Vlastaridis, Panayotis;
Mossialos, Dimitris;
Ibba, Michael;
Becker, Hubert D.;
Stathopoulos, Constantinos;
Amoutzias, Grigorios D.

Publication type:

Article

Fission yeast Stn1 is crucial for semi-conservative replication at telomeres and subtelomeres.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1255, doi. 10.1093/nar/gkw1176

By:

Masahiro Takikawa;
Yusuke Tarumoto;
Fuyuki Ishikawa

Publication type:

Article

Novel roles of HP1a and Mcm10 in DNA replication, genome maintenance and photoreceptor cell differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1233, doi. 10.1093/nar/gkw1174

By:

Nicole Vo;
Dang Ngoc Anh Suong;
Natsuki Yoshino;
Hideki Yoshida;
Cotterill, Sue;
Masamitsu Yamaguchi

Publication type:

Article

Human MLH1 suppresses the insertion of telomeric sequences at intra-chromosomal sites in telomerase-expressing cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1219, doi. 10.1093/nar/gkw1170

By:

Pingping Jia;
Chastain, Megan;
Ying Zou;
Chengtao Her;
Weihang Chai

Publication type:

Article

3D genome structure modeling by Lorentzian objective function.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1049, doi. 10.1093/nar/gkw1155

By:

Tuan Trieu;
Jianlin Cheng

Publication type:

Article

Yeast DNA polymerase ζ maintains consistent activity and mutagenicity across a wide range of physiological dNTP concentrations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1200, doi. 10.1093/nar/gkw1149

By:

Kochenova, Olga V.;
Bezalel-Buch, Rachel;
Tran, Phong;
Makarova, Alena V.;
Chabes, Andrei;
Burgers, Peter M. J.;
Shcherbakova, Polina V.

Publication type:

Article

Not5-dependent co-translational assembly of Ada2 and Spt20 is essential for functional integrity of SAGA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1186, doi. 10.1093/nar/gkw1059

By:

Kassem, Sari;
Villanyi, Zoltan;
Collart, Martine A.

Publication type:

Article

A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1177, doi. 10.1093/nar/gkw1051

By:

Yan Wang;
Yang Shen;
Qian Dai;
Qian Yang;
Yue Zhang;
Xin Wang;
Wei Xie;
Zhuojuan Luo;
Chengqi Lin

Publication type:

Article

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1079, doi. 10.1093/nar/gkw1031

By:

Vitsios, Dimitrios M.;
Davis, Matthew P.;
van Dongen, Stijn;
Enright, Anton J.

Publication type:

Article

Epigenetic changes in histone acetylation underpin resistance to the topoisomerase I inhibitor irinotecan.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1159, doi. 10.1093/nar/gkw1026

By:

Meisenberg, Cornelia;
Ashour, Mohamed E.;
El-Shafie, Lamia;
Chunyan Liao;
Hodgson, Adam;
Pilborough, Alice;
Khurram, Syed A.;
Downs, Jessica A.;
Ward, Simon E.;
El-Khamisy, Sherif F.

Publication type:

Article

Histone H2B monoubiquitination is a critical epigenetic switch for the regulation of autophagy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1144, doi. 10.1093/nar/gkw1025

By:

Su Chen;
Yuanya Jing;
Xuan Kang;
Lu Yang;
Da-Liang Wang;
Wei Zhang;
Lei Zhang;
Ping Chen;
Jian-Feng Chang;
Xiao-Mei Yang;
Fang-Lin Sun

Publication type:

Article

Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1130, doi. 10.1093/nar/gkw1014

By:

Gillinder, Kevin R.;
Ilsley, Melissa D.;
Nébor, Danitza;
Sachidanandam, Ravi;
Lajoie, Mathieu;
Magor, Graham W.;
Tallack, Michael R.;
Bailey, Timothy;
Landsberg, Michael J.;
Mackay, Joel P.;
Parker, Michael W.;
Miles, Luke A.;
Graber, Joel H.;
Peters, Luanne L.;
Bieker, James J.;
Perkins, Andrew C.

Publication type:

Article

KDM2A integrates DNA and histone modification signals through a CXXC/PHD module and direct interaction with HP1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1114, doi. 10.1093/nar/gkw979

By:

Borgel, Julie;
Tyl, Marek;
Schiller, Karin;
Pusztai, Zsofia;
Dooley, Christopher M.;
Wen Deng;
Wooding, Carol;
White, Richard J.;
Warnecke, Tobias;
Leonhardt, Heinrich;
Busch-Nentwich, Elisabeth M.;
Bartke, Till

Publication type:

Article

Misincorporation by RNA polymerase is a major source of transcription pausing in vivo.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1105, doi. 10.1093/nar/gkw969

By:

James, Katherine;
Gamba, Pamela;
Cockell, Simon J.;
Zenkin, Nikolay

Publication type:

Article

Reciprocal regulation of chromatin state and architecture by HOTAIRM1 contributes to temporal collinear HOXA gene activation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1091, doi. 10.1093/nar/gkw966

By:

Wang, Xue Q. D.;
Dostie, Josée

Publication type:

Article

Analysis of translation using polysome profiling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1, doi. 10.1093/nar/gkw907

By:

Chassé, Héloïse;
Boulben, Sandrine;
Costache, Vlad;
Cormier, Patrick;
Morales, Julia

Publication type:

Article

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1, doi. 10.1093/nar/gkw900

By:

Orellana, Luis H.;
Rodriguez-R., Luis M.;
Konstantinidis, Konstantinos T.

Publication type:

Article

IMHOTEP--a composite score integrating popular tools for predicting the functional consequences of non-synonymous sequence variants.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1, doi. 10.1093/nar/gkw886

By:

Knecht, Carolin;
Mort, Matthew;
Junge, Olaf;
Cooper, David N.;
Krawczak, Michael;
Caliebe, Amke

Publication type:

Article

Challenges of CRISPR/Cas9 applications for long non-coding RNA genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1, doi. 10.1093/nar/gkw883

By:

Goyal, Ashish;
Myacheva, Ksenia;
Groß, Matthias;
Klingenberg, Marcel;
Arqué, Berta Duran;
Diederichs, Sven

Publication type:

Article

Characterization of homing endonuclease binding and cleavage specificities using yeast surface display SELEX (YSD-SELEX).

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1, doi. 10.1093/nar/gkw864

By:

Jacoby, Kyle;
Lambert, Abigail R.;
Scharenberg, Andrew M.

Publication type:

Article

TEG-1 CD2BP2 controls miRNA levels by regulating miRISC stability in C. elegans and human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1488, doi. 10.1093/nar/gkw836

By:

Wang, Chris;
Gupta, Pratyush;
Fressigne, Lucile;
Bossé, Gabriel D.;
Xin Wang;
Simard, Martin J.;
Hansen, Dave

Publication type:

Article

The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1479, doi. 10.1093/nar/gkw830

By:

Jolley, Elizabeth A.;
Znosko, Brent M.

Publication type:

Article

Phosphorylation-specific status of RNAi triggers in pharmacokinetic and biodistribution analyses.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1469, doi. 10.1093/nar/gkw828

By:

Trubetskoy, Vladimir S.;
Griffin, Jacob B.;
Nicholas, Anthony L.;
Nord, Eric M.;
Zhao Xu;
Peterson, Ryan M.;
Wooddell, Christine I.;
Rozema, David B.;
Wakefield, Darren H.;
Lewis, David L.;
Kanner, Steven B.

Publication type:

Article

Competitive regulation of alternative splicing and alternative polyadenylation by hnRNP H and CstF64 determines acetylcholinesterase isoforms.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1455, doi. 10.1093/nar/gkw823

By:

Nazim, Mohammad;
Akio Masuda;
Rahman, Mohammad Alinoor;
Nasrin, Farhana;
Jun-ichi Takeda;
Kenji Ohe;
Bisei Ohkawara;
Mikako Ito;
Kinji Ohno

Publication type:

Article

Selective RNA targeting and regulated signaling by RIG-I is controlled by coordination of RNA and ATP binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1442, doi. 10.1093/nar/gkw816

By:

Fitzgerald, Megan E.;
Rawling, David C.;
Potapova, Olga;
Ren, Xiaoming;
Kohlway, Andrew;
Pyle, Anna Marie

Publication type:

Article

High-throughput single-base resolution mapping of RNA 2'-O-methylated residues.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1433, doi. 10.1093/nar/gkw810

By:

Incarnato, Danny;
Anselmi, Francesca;
Morandi, Edoardo;
Neri, Francesco;
Maldotti, Mara;
Rapelli, Stefania;
Parlato, Caterina;
Basile, Giulia;
Oliviero, Salvatore

Publication type:

Article

In-cell SHAPE uncovers dynamic interactions between the untranslated regions of the foot-and-mouth disease virus RNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1416, doi. 10.1093/nar/gkw795

By:

Diaz-Toledano, Rosa;
Lozano, Gloria;
Martinez-Salas, Encarnacion

Publication type:

Article

Use of Baby Spinach and Broccoli for imaging of structured cellular RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 3, p. 1404, doi. 10.1093/nar/gkw794

By:

Maho Okuda;
Fourmy, Dominique;
Satoko Yoshizawa

Publication type:

Article