Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 22

Results: 46

Linnorm: improved statistical analysis for single cell RNA-seq expression data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx828

By:

Yip, Shun H.;
Wang, Panwen;
Kocher, Jean-Pierre A.;
Sham, Pak Chung;
Wang, Junwen

Publication type:

Article

Conserved structures formed by heterogeneous RNA sequences drive silencing of an inflammation responsive post-transcriptional operon.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12987, doi. 10.1093/nar/gkx979

By:

Basu, Abhijit;
Jain, Niyati;
Tolbert, Blanton S.;
Komar, Anton A.;
Mazumder, Barsanjit

Publication type:

Article

Aberrant ribonucleotide incorporation and multiple deletions in mitochondrial DNA of the murine MPV17 disease model.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12808, doi. 10.1093/nar/gkx1009

By:

Moss, Chloe F.;
Rosa, Ilaria Dalla;
Hunt, Lilian E.;
Takehiro Yasukawa;
Young, Robert;
Jones, Aleck W. E.;
Reddy, Kaalak;
Desai, Radha;
Virtue, Sam;
Elgar, Greg;
Voshol, Peter;
Taylor, Martin S.;
Holt, Ian J.;
Reijns, Martin A. M.;
Spinazzola, Antonella

Publication type:

Article

Arrayed mutant haploid embryonic stem cell libraries facilitate phenotype-driven genetic screens.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx857

By:

Guang Liu;
Xue Wang;
Yufang Liu;
Meili Zhang;
Tao Cai;
Zhirong Shen;
Yuyan Jia;
Yue Huang

Publication type:

Article

Biogenesis and iron-dependency of ribosomal RNA hydroxylation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12974, doi. 10.1093/nar/gkx969

By:

Satoshi Kimura;
Yusuke Sakai;
Kensuke Ishiguro;
Tsutomu Suzuki

Publication type:

Article

Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12739, doi. 10.1093/nar/gkx885

By:

Hui Zhang;
Feifei Li;
Yan Jia;
Bingxiang Xu;
Yiqun Zhang;
Xiaoli Li;
Zhihua Zhang

Publication type:

Article

Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13043, doi. 10.1093/nar/gkx970

By:

Masahiko Okuda;
Yuka Nakazawa;
Chaowan Guo;
Tomoo Ogi;
Yoshifumi Nishimura

Publication type:

Article

Conserved non-coding elements: developmental gene regulation meets genome organization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12611, doi. 10.1093/nar/gkx1074

By:

Polychronopoulos, Dimitris;
King, James W. D.;
Nash, Alexander J.;
Ge Tan;
Lenhard, Boris

Publication type:

Article

RNase H sequence preferences influence antisense oligonucleotide efficiency.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12932, doi. 10.1093/nar/gkx1073

By:

Kie-lpiński, Lukasz J.;
Hagedorn, Peter H.;
Lindow, Morten;
Vinther, Jeppe

Publication type:

Article

Secondary structure forming sequences drive SD-MMEJ repair of DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12848, doi. 10.1093/nar/gkx1056

By:

Khodaverdian, Varandt Y.;
Hanscom, Terrence;
Marie Yu, Amy;
Yu, Taylor L.;
Mak, Victoria;
Brown, Alexander J.;
Roberts, Steven A.;
McVey, Mitch

Publication type:

Article

Structural basis for the functional role of the Shu complex in homologous recombination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13068, doi. 10.1093/nar/gkx992

By:

Shicheng Zhang;
Linlin Wang;
Ye Tao;
Tuya Bai;
Rong Lu;
Tianlong Zhang;
Jiangye Chen;
Jianping Ding

Publication type:

Article

CsrA maximizes expression of the AcrAB multidrug resistance transporter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12798, doi. 10.1093/nar/gkx929

By:

Ricci, Vito;
Attah, Victoria;
Overton, Tim;
Grainger, David C.;
Piddock, Laura J. V.

Publication type:

Article

Structural basis of effector and operator recognition by the phenolic acid-responsive transcriptional regulator PadR.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13080, doi. 10.1093/nar/gkx1055

By:

Sun Cheol Park;
Yun Mi Kwak;
Wan Seok Song;
Minsun Hong;
Sung-il Yoon

Publication type:

Article

Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx858

By:

Atanasov, Janina;
Groher, Florian;
Weigand, Julia E.;
Suess, Beatrix

Publication type:

Article

Structure of the large terminase from a hyperthermophilic virus reveals a unique mechanism for oligomerization and ATP hydrolysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13029, doi. 10.1093/nar/gkx947

By:

Rui-Gang Xu;
Huw T. Jenkins;
Alfred A. Antson;
Sandra J. Greive

Publication type:

Article

Distinct roles for the IIId2 sub-domain in pestivirus and picornavirus internal ribosome entry sites.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13016, doi. 10.1093/nar/gkx991

By:

Willcocks, Margaret M.;
Zaini, Salmah;
Chamond, Nathalie;
Ulryck, Nathalie;
Allouche, Delphine;
Rajagopalan, Noemie;
Davids, Nana A.;
Fahnøe, Ulrik;
Hadsbjerg, Johanne;
Rasmussen, Thomas Bruun;
Roberts, Lisa O.;
Sargueil, Bruno;
Belsham, Graham J.;
Locker, Nicolas

Publication type:

Article

The mechanism and high-free-energy transition state of lac repressor–lac operator interaction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12671, doi. 10.1093/nar/gkx862

By:

Sengupta, Rituparna;
Capp, Michael W.;
Shkel, Irina A.;
Record Jr, M. Thomas

Publication type:

Article

Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12681, doi. 10.1093/nar/gkx865

By:

Yehoshua Enuka;
Feldman, Morris E.;
Chowdhury, Animesh;
Srivastava, Swati;
Lindzen, Moshit;
Sas-Chen, Aldema;
Massart, Renaud;
Cheishvili, David;
Suderman, Matthew J.;
Zaltsman, Yoav;
Mazza, Chiara A.;
Shukla, Kirti;
Körner, Cindy;
Furth, Noa;
Lauriola, Mattia;
Oren, Moshe;
Wiemann, Stefan;
Szyf, Moshe;
Yarden, Yosef

Publication type:

Article

Global inhibition of transcription causes an increase in histone H2A.Z incorporation within gene bodies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12715, doi. 10.1093/nar/gkx879

By:

Lashgari, Anahita;
Millau, Jean-François;
Jacques, Pierre-Étienne;
Gaudreau, Luc

Publication type:

Article

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12723, doi. 10.1093/nar/gkx884

By:

Pishun Li;
Li Wang;
Bennett, Brian D.;
Wang, Jiajia;
Jialun Li;
Yufeng Qin;
Motoki Takaku;
Wade, Paul A.;
Jiemin Wong;
Guang Hu

Publication type:

Article

Conformational profiling of a G-rich sequence within the c-KIT promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13056, doi. 10.1093/nar/gkx983

By:

Rigo, Riccardo;
Dean, William L.;
Gray, Robert D.;
Chaires, Jonathan B.;
Sissi, Claudia

Publication type:

Article

Tet1 facilitates hypoxia tolerance by stabilizing the HIF-α proteins independent of its methylcytosine dioxygenase activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12700, doi. 10.1093/nar/gkx869

By:

Jing Wang;
Dawei Zhang;
Juan Du;
Chi Zhou;
Zhi Li;
Xing Liu;
Gang Ouyang;
Wuhan Xiao

Publication type:

Article

In silico direct folding of thrombin-binding aptamer G-quadruplex at all-atom level.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12648, doi. 10.1093/nar/gkx1079

By:

Changwon Yang;
Kulkarni, Mandar;
Manho Lim;
Youngshang Pak

Publication type:

Article

Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx1194

By:

Oudelaar, A. Marieke;
Davies, James O. J.;
Downes, Damien J.;
Higgs, Douglas R.;
Hughes, Jim R.

Publication type:

Article

Meta-analysis of DNA double-strand break response kinetics.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12625, doi. 10.1093/nar/gkx1128

By:

Kochan, Jakub A.;
Desclos, Emilie C.B.;
Bosch, Ruben;
Meister, Luna;
Vriend, Lianne E.M.;
van Attikum, Haico;
Krawczyk, Przemek M.

Publication type:

Article

Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein P.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 13004, doi. 10.1093/nar/gkx982

By:

Mariotti, Marco;
Shetty, Sumangala;
Baird, Lisa;
Sen Wu;
Loughran, Gary;
Copeland, Paul R.;
Atkins, John F.;
Howard, Michael T.

Publication type:

Article

Optimizing DNA assembly based on statistical language modelling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx859

By:

Gang Fang;
Shemin Zhang;
Yafei Dong

Publication type:

Article

PARP1 changes from three-dimensional DNA damage searching to one-dimensional diffusion after auto-PARylation or in the presence of APE1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12834, doi. 10.1093/nar/gkx1047

By:

Lili Liu;
Muwen Kong;
Gassman, Natalie R.;
Freudenthal, Bret D.;
Prasad, Rajendra;
Zhen, Stephanie;
Watkins, Simon C.;
Wilson, Samuel H.;
Van Houten, Bennett

Publication type:

Article

PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 1, doi. 10.1093/nar/gkx866

By:

Singh, Urminder;
Khemka, Niraj;
Rajkumar, Mohan Singh;
Garg, Rohini;
Jain, Mukesh

Publication type:

Article

RBM45 competes with HDAC1 for binding to FUS in response to DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12862, doi. 10.1093/nar/gkx1102

By:

Juanjuan Gong;
Min Huang;
Fengli Wang;
Xiaolu Ma;
Hongmei Liu;
Yingfeng Tu;
Lingyu Xing;
Xuefei Zhu;
Hui Zheng;
Junjie Fang;
Xiaoling Li;
Qiaochu Wang;
Jiuqiang Wang;
Zhongshuai Sun;
Xi Wang;
Yun Wang;
Caixia Guo;
Tie-Shan Tang

Publication type:

Article

The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12816, doi. 10.1093/nar/gkx1046

By:

Vohhodina, Jekaterina;
Barros, Eliana M.;
Savage, Abigail L.;
Liberante, Fabio G.;
Manti, Lorenzo;
Bankhead, Peter;
Cosgrove, Nicola;
Madden, Angelina F.;
Harkin, D. Paul;
Savage, Kienan I.

Publication type:

Article

Discovering the 3' UTR-mediated regulation of alpha-synuclein.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12888, doi. 10.1093/nar/gkx1048

By:

Marchese, Domenica;
Botta-Orfila, Teresa;
Cirillo, Davide;
Rodriguez, Juan Antonio;
Livi., Carmen Maria;
Fernández-Santiago, Rubén;
Ezquerra, Mario;
Martí, Maria J.;
Bechara, Elias;
Tartaglia, Gian Gaetano

Publication type:

Article

Corrigendum: Phospho-epitope binding by the BRCT domains of hPTIP controls multiple aspects of the cellular response to DNA damage.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 22, p. 13904, doi. 10.1093/nar/gkx1140
Publication type:: Article

Derivation of nearest-neighbor DNA parameters in magnesium from single molecule experiments.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12921, doi. 10.1093/nar/gkx1161

By:

Huguet, Josep Maria;
Ribezzi-Crivellari, Marco;
Valim Bizarro, Cristiano;
Ritort, Felix

Publication type:

Article

The mechano-chemistry of a monomeric reverse transcriptase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12954, doi. 10.1093/nar/gkx1168

By:

Malik, Omri;
Khamis, Hadeel;
Rudnizky, Sergei;
Kaplan, Ariel

Publication type:

Article

Structure modeling of RNA using sparse NMR constraints.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12638, doi. 10.1093/nar/gkx1058

By:

Williams, II, Benfeard;
Bo Zhao;
Tandon, Arpit;
Feng Ding;
Weeks, Kevin M.;
Qi Zhang;
Dokholyan, Nikolay V.

Publication type:

Article

Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12945, doi. 10.1093/nar/gkx1159

By:

Remus, Barbara S.;
Goldgur, Yehuda;
Shuman, Stewart

Publication type:

Article

NS3 helicase from dengue virus specifically recognizes viral RNA sequence to ensure optimal replication.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12904, doi. 10.1093/nar/gkx1127

By:

Swarbrick, Crystall M. D.;
Basavannacharya, Chandrakala;
Chan, Kitti W. K.;
Shu-Ann Chan;
Singh, Daljit;
Na Wei;
Wint Wint Phoo;
Dahai Luo;
Lescar, Julien;
Vasudevan, Subhash G.

Publication type:

Article

Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12877, doi. 10.1093/nar/gkx1145

By:

Li, Jinsen;
Sagendorf, Jared M.;
Tsu-Pei Chiu;
Pasi, Marco;
Perez, Alberto;
Rohs, Remo

Publication type:

Article

Corrigendum: Linnorm: improved statistical analysis for single cell RNA-seq expression data.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 22, p. 13907, doi. 10.1093/nar/gkx1189
Publication type:: Article

Logical engineering of D-arm and T-stem of tRNA that enhances D-amino acid incorporation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12601, doi. 10.1093/nar/gkx1129

By:

Takayuki Katoh;
Yoshihiko Iwane;
Hiroaki Suga

Publication type:

Article

Discovering cancer vulnerabilities using high-throughput micro-RNA screening.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12657, doi. 10.1093/nar/gkx1072

By:

Nikolic, Iva;
Elsworth, Benjamin;
Dodson, Eoin;
Wu, Sunny Z.;
Gould, Cathryn M.;
Mestdagh, Pieter;
Marshall, Glenn M.;
Horvath, Lisa G.;
Simpson, Kaylene J.;
Swarbrick, Alexander

Publication type:

Article

Polycytidylation of mitochondrial mRNAs in Chlamydomonas reinhardtii.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12963, doi. 10.1093/nar/gkx903

By:

Salinas-Giegé, Thalia;
Cavaiuolo, Marina;
Cognat, Valérie;
Ubrig, Elodie;
Remacle, Claire;
Duchêne, Anne-Marie;
Vallon, Olivier;
Maréchal-Drouard, Laurence

Publication type:

Article

Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12780, doi. 10.1093/nar/gkx900

By:

Nanan, Kyster K.;
Ocheltree, Cody;
Sturgill, David;
Mandler, Mariana D.;
Prigge, Maria;
Varma, Garima;
Oberdoerffer, Shalini

Publication type:

Article

Loss of imprinting mutations define both distinct and overlapping roles for misexpression of IGF2 and of H19 IncRNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12766, doi. 10.1093/nar/gkx896

By:

Ki-Sun Park;
Mitra, Apratim;
Rahat, Beenish;
Keekwang Kim;
Pfeifer, Karl

Publication type:

Article

Accumulation of long-term transcriptionally active integrated retroviral vectors in active promoters and enhancers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 22, p. 12752, doi. 10.1093/nar/gkx889

By:

Šenigl, Filip;
Miklík, Dalibor;
Auxt, Miroslav;
Hejnar, Jiří

Publication type:

Article