Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 21

Results: 46

The RNA binding protein EWS is broadly involved in the regulation of pri-miRNA processing in mammalian cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12481, doi. 10.1093/nar/gkx912

By:

Huiwu Ouyang;
Kai Zhang;
Kristi Fox-Walsh;
Yang Yang;
Chen Zhang;
Jie Huang;
Hairi Li;
Yu Zhou;
Xiang-Dong Fu

Publication type:

Article

The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12551, doi. 10.1093/nar/gkx887

By:

Min-Jun Li;
Gang-Shun Yi;
Feng Yu;
Huan Zhou;
Jia-Nan Chen;
Chun-Yan Xu;
Feng-Ping Wang;
Xiang Xiao;
Jian-Hua He;
Xi-Peng Liu

Publication type:

Article

A hyperdynamic H3.3 nucleosome marks promoter regions in pluripotent embryonic stem cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12181, doi. 10.1093/nar/gkx817

By:

Schlesinger, Sharon;
Kaffe, Binyamin;
Melcer, Shai;
Aguilera, Jose D.;
Sivaraman, Divya M.;
Kaplan, Tommy;
Meshorer, Eran

Publication type:

Article

Molecular basis for asymmetry sensing of siRNAs by the Drosophila Loqs-PD/Dcr-2 complex in RNA interference.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12536, doi. 10.1093/nar/gkx886

By:

Tants, Jan-Niklas;
Fesser, Stephanie;
Kern, Thomas;
Stehle, Ralf;
Geerlof, Arie;
Wunderlich, Christoph;
Juen, Michael;
Hartlmüller, Christoph;
Böttcher, Romy;
Kunzelmann, Stefan;
Lange, Oliver;
Kreutz, Christoph;
Förstemann, Klaus;
Sattler, Michael

Publication type:

Article

A cautionary tale of sense-antisense gene pairs: independent regulation despite inverse correlation of expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12496, doi. 10.1093/nar/gkx952

By:

Goyal, Ashish;
Fiškin, Evgenij;
Gutschner, Tony;
Polycarpou-Schwarz, Maria;
Groß, Matthias;
Neugebauer, Julia;
Gandhi, Minakshi;
Caudron-Herger, Maiwen;
Benes, Vladimir;
Diederichs, Sven

Publication type:

Article

Dynamic DNA binding, junction recognition and G4 melting activity underlie the telomeric and genome-wide roles of human CST.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12311, doi. 10.1093/nar/gkx878

By:

Bhattacharjee, Anukana;
Wang, Yongyao;
Diao, Jiajie;
Price, Carolyn M.

Publication type:

Article

FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12585, doi. 10.1093/nar/gkx1007

By:

Świat, Michal A.;
Dashko, Sofia;
den Ridder, Maxime;
Wijsman, Melanie;
van der Oost, John;
Daran, Jean-Marc;
Daran-Lapujade, Pascale

Publication type:

Article

Thioflavin T binds dimeric parallel-stranded GA-containing non-G-quadruplex DNAs: a general approach to lighting up double-stranded scaffolds.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12080, doi. 10.1093/nar/gkx942

By:

Shuangna Liu;
Pai Peng;
Huihui Wang;
Lili Shi;
Tao Li

Publication type:

Article

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12565, doi. 10.1093/nar/gkx915

By:

Tsu-Pei Chiu;
Rao, Satyanarayan;
Mann, Richard S.;
Honig, Barry;
Rohs, Remo

Publication type:

Article

hnRNPM guides an alternative splicing program in response to inhibition of the PI3K/AKT/mTOR pathway in Ewing sarcoma cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12270, doi. 10.1093/nar/gkx831

By:

Passacantilli, Ilaria;
Frisone, Paola;
De Paola, Elisa;
Fidaleo, Marco;
Paronetto, Maria Paola

Publication type:

Article

Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12195, doi. 10.1093/nar/gkx821

By:

Soldi, Monica;
Mari, Tommaso;
Nicosia, Luciano;
Musiani, Daniele;
Sigismondo, Gianluca;
Cuomo, Alessandro;
Pavesi, Giulio;
Bonaldi, Tiziana

Publication type:

Article

An efficient method for generation of bi-allelic null mutant mouse embryonic stem cells and its application for investigating epigenetic modifiers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx811

By:

Fisher, Cynthia L.;
Marks, Hendrik;
Ting-yin Cho, Lily;
Andrews, Robert;
Wormald, Sam;
Carroll, Thomas;
Iyer, Vivek;
Tate, Peri;
Rosen, Barry;
Stunnenberg, Hendrik G.;
Fisher, Amanda G.;
Skarnes, William C.

Publication type:

Article

Measurement of nanoscale DNA translocation by uracil DNA glycosylase in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12413, doi. 10.1093/nar/gkx848

By:

Esadze, Alexandre;
Rodriguez, Gaddiel;
Weiser, Brian P.;
Cole, Philip A.;
Stivers, James T.

Publication type:

Article

The MRPP1/MRPP2 complex is a tRNA-maturation platform in human mitochondria.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12469, doi. 10.1093/nar/gkx902

By:

Reinhard, Linda;
Sridhara, Sagar;
Hällberg, B. Martin

Publication type:

Article

Characterization of the APLF FHA–XRCC1 phosphopeptide interaction and its structural and functional implications.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12374, doi. 10.1093/nar/gkx941

By:

Kyungmin Kim;
Pedersen, Lars C.;
Kirby, Thomas W.;
DeRose, Eugene F.;
London, Robert E.

Publication type:

Article

Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx799

By:

Stanton, Kelly P.;
Jiaqi Jin;
Lederman, Roy R.;
Weissman, Sherman M.;
Kluger, Yuval

Publication type:

Article

NF90–NF45 is a selective RNA chaperone that rearranges viral and cellular riboswitches: biochemical analysis of a virus host factor activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12441, doi. 10.1093/nar/gkx931

By:

Schmidt, Tobias;
Friedrich, Susann;
Golbik, Ralph Peter;
Behrens, Sven-Erik

Publication type:

Article

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12509, doi. 10.1093/nar/gkx963

By:

Scott, Daniel D.;
Trahan, Christian;
Zindy, Pierre J.;
Aguilar, Lisbeth C.;
Delubac, Marc Y.;
Van Nostrand, Eric L.;
Adivarahan, Srivathsan;
Wei, Karen E.;
Yeo, Gene W.;
Zenklusen, Daniel;
Oeffinger, Marlene

Publication type:

Article

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12285, doi. 10.1093/nar/gkx840

By:

Zolotarev, Nikolay;
Maksimenko, Oksana;
Kyrchanova, Olga;
Sokolinskaya, Elena;
Osadchiy, Igor;
Girardot, Charles;
Bonchuk, Artem;
Ciglar, Lucia;
Furlong, Eileen E. M.;
Georgiev, Pavel

Publication type:

Article

Detecting and characterizing microRNAs of diverse genomic origins via miRvial.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx834

By:

Jing Xia;
Lun Li;
Tiantian Li;
Zhiwei Fang;
Kevin Zhang;
Junfei Zhou;
Hai Peng;
Weixiong Zhang

Publication type:

Article

PARP2 controls double-strand break repair pathway choice by limiting 53BP1 accumulation at DNA damage sites and promoting end-resection.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12325, doi. 10.1093/nar/gkx881

By:

Fouquin, Alexis;
Guirouilh-Barbat, Josée;
Lopez, Bernard;
Hall, Janet;
Amor-Guéret, Mounira;
Pennaneach, Vincent

Publication type:

Article

Asialoglycoprotein receptor 1 mediates productive uptake of N-acetylgalactosamine-conjugated and unconjugated phosphorothioate antisense oligonucleotides into liver hepatocytes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12388, doi. 10.1093/nar/gkx960

By:

Tanowitz, Michael;
Hettrick, Lisa;
Revenko, Alexey;
Kinberger, Garth A.;
Prakash, Thazha P.;
Seth, Punit P.

Publication type:

Article

Principles for the regulation of multiple developmental pathways by a versatile transcriptional factor, BLIMP1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12152, doi. 10.1093/nar/gkx798

By:

Tadahiro Mitani;
Yukihiro Yabuta;
Hiroshi Ohta;
Tomonori Nakamura;
Chika Yamashiro;
Takuya Yamamoto;
Mitinori Saitou;
Kazuki Kurimoto

Publication type:

Article

Asymmetric cell division requires specific mechanisms for adjusting global transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12401, doi. 10.1093/nar/gkx974

By:

Mena, Adriana;
Medina, Daniel A.;
García-Martínez, José;
Begley, Victoria;
Singh, Abhyudai;
Chávez, Sebastián;
Muñoz-Centeno, Mari C.;
Pérez-Ortín, José E.

Publication type:

Article

Aurora Kinase B, a novel regulator of TERF1 binding and telomeric integrity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12340, doi. 10.1093/nar/gkx904

By:

Foong Lyn Chan;
Vinod, Benjamin;
Novy, Karel;
Schittenhelm, Ralf B.;
Cheng Huang;
Udugama, Maheshi;
Nunez-Iglesias, Juan;
Lin, Jane I.;
Linda Hii;
Chan, Julie;
Pickett, Hilda A.;
Daly, Roger J.;
Wong, Lee H.

Publication type:

Article

Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12170, doi. 10.1093/nar/gkx812

By:

Nečasová, Ivona;
Janoušková, Eliška;
Klumpler, Tomáš;
Hofr, Ctirad

Publication type:

Article

The REMOTE-control system: a system for reversible and tunable control of endogenous gene expression in mice.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12256, doi. 10.1093/nar/gkx829

By:

Kwang-Ho Lee;
Oghamian, Shirley;
Park, Jin-A.;
Liang Kang;
Laird, Peter W.

Publication type:

Article

Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12599, doi. 10.1093/nar/gkx968

By:

Nečasová, Ivona;
Janoušková, Eliška;
Klumpler, Tomáš;
Hofr, Ctirad

Publication type:

Article

Rice NAD<sup>+</sup>-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12241, doi. 10.1093/nar/gkx825

By:

Hua Zhang;
Yu Zhao;
Dao-Xiu Zhou

Publication type:

Article

Calcium-driven DNA synthesis by a high-fidelity DNA polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12425, doi. 10.1093/nar/gkx927

By:

Ralec, Céline;
Henry, Etienne;
Lemor, Mélanie;
Killelea, Tom;
Henneke, Ghislaine

Publication type:

Article

Conserved asymmetry underpins homodimerization of Dicer-associated double-stranded RNA-binding proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12577, doi. 10.1093/nar/gkx928

By:

Heyam, Alex;
Coupland, Claire E.;
Dégut, Clément;
Haley, Ruth A.;
Baxter, Nicola J.;
Jakob, Leonhard;
Aguiar, Pedro M.;
Meister, Gunter;
Williamson, Michael P.;
Lagos, Dimitris;
Plevin, Michael J.

Publication type:

Article

The Omics Dashboard for interactive exploration of gene-expression data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12113, doi. 10.1093/nar/gkx910

By:

Paley, Suzanne;
Parker, Karen;
Spaulding, Aaron;
Tomb, Jean-Francois;
O’Maille, Paul;
Karp, Peter D.

Publication type:

Article

Deep learning of the splicing (epi)genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12100, doi. 10.1093/nar/gkx870

By:

Yungang Xu;
Yongcui Wang;
Jiesi Luo;
Weiling Zhao;
Xiaobo Zhou

Publication type:

Article

A structural basis for the antibiotic resistance conferred by an N1-methylation of A1408 in 16S rRNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12529, doi. 10.1093/nar/gkx882

By:

Hiroki Kanazawa;
Fumika Baba;
Mai Koganei;
Jiro Kondo

Publication type:

Article

sRNAnalyzer––a flexible and customizable small RNA sequencing data analysis pipeline.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12140, doi. 10.1093/nar/gkx999

By:

Xiaogang Wu;
Taek-Kyun Kim;
Baxter, David;
Scherler, Kelsey;
Gordon, Aaron;
Olivia Fong;
Etheridge, Alton;
Galas, David J.;
Kai Wang

Publication type:

Article

DNA-assisted oligomerization of pore-forming toxin monomers into precisely-controlled protein channels.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12057, doi. 10.1093/nar/gkx990

By:

Henning-Knechtel, Anja;
Knechtel, Johann;
Magzoub, Mazin

Publication type:

Article

Striking a balance: regulation of transposable elements by Zfp281 and Mll2 in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12301, doi. 10.1093/nar/gkx841

By:

Qian Dai;
Yang Shen;
Yan Wang;
Xin Wang;
Francisco, Joel Celio;
Zhuojuan Luo;
Chengqi Lin

Publication type:

Article

tGBS<sup>®</sup> genotyping-by-sequencing enables reliable genotyping of heterozygous loci.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx853

By:

Ott, Alina;
Sanzhen Liu;
Schnable, James C.;
Cheng-Ting ‘Eddy’ Yeh;
Kai-Sin Wang;
Schnable, Patrick S.

Publication type:

Article

The effects of DNA supercoiling on G-quadruplex formation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12069, doi. 10.1093/nar/gkx856

By:

Sekibo, Doreen A.T.;
Fox, Keith R.

Publication type:

Article

Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx836

By:

Vitsios, Dimitrios M.;
Kentepozidou, Elissavet;
Quintais, Leonor;
Benito-Gutiérrez, Elia;
van Dongen, Stijn;
Davis, Matthew P.;
Enright, Anton J.

Publication type:

Article

Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12354, doi. 10.1093/nar/gkx914

By:

Yukari Sakiyama;
Kazutoshi Kasho;
Yasunori Noguchi;
Hironori Kawakami;
Tsutomu Katayama

Publication type:

Article

A mechanism underlying position-specific regulation of alternative splicing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 12455, doi. 10.1093/nar/gkx901

By:

Hamid, Fursham M.;
Makeyev, Eugene V.

Publication type:

Article

Corrigendum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 21, p. 12600, doi. 10.1093/nar/gkx1099
Publication type:: Article

Fabrication of circular assemblies with DNA tetrahedrons: from static structures to a dynamic rotary motor.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx1045

By:

Liying Wang;
Zhenyu Meng;
Martina, Felicia;
Huilin Shao;
Fangwei Shao

Publication type:

Article

Molecular mechanism of DNA association with single-stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx917

By:

Maffeo, Christopher;
Aksimentiev, Aleksei

Publication type:

Article

Measurement of incorporation kinetics of non-fluorescent native nucleotides by DNA polymerases using fluorescence microscopy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx833

By:

Walsh, Matthew T.;
Xiaohua Huang

Publication type:

Article