Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 20

Results: 50

Corrigendum: 2'-Fluoroarabinonucleic acid modification traps G-quadruplex and i-motif structures in human telomeric DNA.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 20, p. 12055, doi. 10.1093/nar/gkx962
Publication type:: Article

Corrigendum: Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 20, p. 12054, doi. 10.1093/nar/gkx909
Publication type:: Article

CRISPR/Cas9-mediated gene knockout is insensitive to target copy number but is dependent on guide RNA potency and Cas9/sgRNA threshold expression level.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 12039, doi. 10.1093/nar/gkx843

By:

Yuen, Garmen;
Khan, Fehad J.;
Shaojian Gao;
Stommel, Jayne M.;
Batchelor, Eric;
Xiaolin Wu;
Ji Luo

Publication type:

Article

Mechanistic insight into the assembly of the HerA-NurA helicase-nuclease DNA end resection complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 12025, doi. 10.1093/nar/gkx890

By:

Ahdash, Zainab;
Lau, Andy M.;
Byrne, Robert Thomas;
Lammens, Katja;
Stüetzer, Alexandra;
Urlaub, Henning;
Booth, Paula J.;
Reading, Eamonn;
Hopfner, Karl-Peter;
Politis, Argyris

Publication type:

Article

Structural insights into RNA unwinding and degradation by RNase R.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 12015, doi. 10.1093/nar/gkx880

By:

Lee-Ya Chu;
Tung-Ju Hsieh;
Golzarroshan, Bagher;
Yi-Ping Chen;
Agrawal, Sashank;
Yuan, Hanna S.

Publication type:

Article

Structural basis for the specific recognition of 18S rRNA by APUM23.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 12004, doi. 10.1093/nar/gkx872

By:

Hongyu Bao;
Na Wang;
Chongyuan Wang;
Yiyang Jiang;
Jiuyang Liu;
Li Xu;
Jihui Wu;
Yunyu Shi

Publication type:

Article

The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11989, doi. 10.1093/nar/gkx852

By:

Dilworth, David;
Upadhyay, Santosh K.;
Bonnafous, Pierre;
Edoo, Amiirah Bibi;
Bourbigot, Sarah;
Pesek-Jardim, Francy;
Gudavicius, Geoff;
Serpa, Jason J.;
Petrotchenko, Evgeniy V.;
Borchers, Christoph H.;
Nelson, Christopher J.;
Mackereth, Cameron D.

Publication type:

Article

The SMAD3 transcription factor binds complex RNA structures with high affinity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11980, doi. 10.1093/nar/gkx846

By:

Dickey, Thayne H.;
Pyle, Anna M.

Publication type:

Article

Novel mechanisms of eIF2B action and regulation by eIF2α phosphorylation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11962, doi. 10.1093/nar/gkx845

By:

Bogorad, Andrew M.;
Kai Ying Lin;
Marintchev, Assen

Publication type:

Article

Cdk5rap1-mediated 2-methylthio-N<sup>6</sup>-isopentenyladenosine modification is absent from nuclear-derived RNA species.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11954, doi. 10.1093/nar/gkx819

By:

Fakruddin, Md.;
Fan Yan Wei;
Shohei Emura;
Shigeru Matsuda;
Takehiro Yasukawa;
Dongchon Kang;
Kazuhito Tomizawa

Publication type:

Article

Competition between translation initiation factor eIF5 and its mimic protein 5MP determines non-AUG initiation rate genome-wide.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11941, doi. 10.1093/nar/gkx808

By:

Leiming Tang;
Morris, Jacob;
Ji Wan;
Moore, Chelsea;
Yoshihiko Fujita;
Gillaspie, Sarah;
Aube, Eric;
Nanda, Jagpreet;
Marques, Maud;
Jangal, Maika;
Anderson, Abbey;
Cox, Christian;
Hiroyuki Hiraishi;
Leiming Dong;
Hirohide Saito;
Singh, Chingakham Ranjit;
Witcher, Michael;
Topisirovic, Ivan;
Shu-Bing Qian;
Katsura Asano

Publication type:

Article

Enzyme cycling contributes to efficient induction of genome mutagenesis by the cytidine deaminase APOBEC3B.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11925, doi. 10.1093/nar/gkx832

By:

Adolph, Madison B.;
Love, Robin P.;
Yuqing Feng;
Linda Chelico

Publication type:

Article

C-terminal lysine repeats in Streptomyces topoisomerase I stabilize the enzyme-DNA complex and confer high enzyme processivity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11908, doi. 10.1093/nar/gkx827

By:

Strzaƚka, Agnieszka;
Szafran, Marcin J.;
Strick, Terence;
Jakimowicz, Dagmara

Publication type:

Article

The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11891, doi. 10.1093/nar/gkx820

By:

Charbonnel, Cyril;
Niazi, Adnan K.;
Elvira-Matelot, Emilie;
Nowak, Elżbieta;
Zytnicki, Matthias;
de Bures, Anne;
Jobet, Edouard;
Opsomer, Alisson;
Shamandi, Nahid;
Nowotny, Marcin;
Carapito, Christine;
Reichheld, Jean-Philippe;
Vaucheret, Hervé;
Sáez-Vásquez, Julio

Publication type:

Article

RecQ helicase triggers a binding mode change in the SSB-DNA complex to efficiently initiate DNA unwinding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11878, doi. 10.1093/nar/gkx939

By:

Mills, Maria;
Harami, Gábor M.;
Yeonee Seol;
Gyimesi, Máté;
Martina, Máté;
Kovács, Zoltán J.;
Neuman, Keir C.

Publication type:

Article

Human Argonaute3 has slicer activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11867, doi. 10.1093/nar/gkx916

By:

Mi Seul Park;
Hong-Duc Phan;
Busch, Florian;
Hinckley, Samantha H.;
Brackbill, James A.;
Wysocki, Vicki H.;
Kotaro Nakanishi

Publication type:

Article

FANCI and FANCD2 have common as well as independent functions during the cellular replication stress response.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11837, doi. 10.1093/nar/gkx847

By:

Thompson, Elizabeth L.;
Yeo, Jung E.;
Lee, Eun-A;
Yinan Kan;
Raghunandan, Maya;
Wiek, Constanze;
Hanenberg, Helmut;
Schärer, Orlando D.;
Hendrickson, Eric A.;
Sobeck, Alexandra

Publication type:

Article

Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11821, doi. 10.1093/nar/gkx898

By:

Li, Jingyi Jessica;
Guo-Liang Chew;
Biggin, Mark D.

Publication type:

Article

Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11800, doi. 10.1093/nar/gkx860

By:

Giner-Lamia, Joaquín;
Robles-Rengel, Rocío;
Hernández-Prieto, Miguel A.;
Muro-Pastor, M. Isabel;
Florencio, Francisco J.;
Futschik, Matthias E.

Publication type:

Article

A cell-penetrating antibody inhibits human RAD51 via direct binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11782, doi. 10.1093/nar/gkx871

By:

Turchick, Audrey;
Hegan, Denise C.;
Jensen, Ryan B.;
Glazer, Peter M.

Publication type:

Article

Dna2 initiates resection at clean DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11766, doi. 10.1093/nar/gkx830

By:

Paudyal, Sharad C.;
Shan Li;
Hong Yan;
Hunter, Tony;
Zhongsheng You

Publication type:

Article

Molecular mechanisms by which oxidative DNA damage promotes telomerase activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11752, doi. 10.1093/nar/gkx789

By:

Hui-Ting Lee;
Bose, Arindam;
Chun-Ying Lee;
Opresko, Patricia L.;
Sua Myong

Publication type:

Article

Cooperative RecA clustering: the key to efficient homology searching.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11743, doi. 10.1093/nar/gkx769

By:

Lee, Andrew J.;
Sharma, Rajan;
Hobbs, Jamie K.;
Wälti, Christoph

Publication type:

Article

The nuclear mitotic apparatus protein NuMA controls rDNA transcription and mediates the nucleolar stress response in a p53-independent manner.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11725, doi. 10.1093/nar/gkx782

By:

Jayaraman, Swaathi;
Chittiboyina, Shirisha;
Yunfeng Bai;
Abad, Patricia C.;
Vidi, Pierre-Alexandre;
Stauffacher, Cynthia V.;
Leliévre, Sophie A.

Publication type:

Article

The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11711, doi. 10.1093/nar/gkx781

By:

Nouaille, Sébastien;
Mondeil, Sophie;
Finoux, Anne-Laure;
Moulis, Claire;
Girbal, Laurence;
Cocaign-Bousquet, Muriel

Publication type:

Article

PP32 and SET/TAF-Iβ proteins regulate the acetylation of newly synthesized histone H4.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11700, doi. 10.1093/nar/gkx775

By:

Saavedra, Francisco;
Rivera, Carlos;
Rivas, Elizabeth;
Merino, Paola;
Garrido, Daniel;
Hernández, Sergio;
Forné, Ignasi;
Vassias, Isabelle;
Gurard-Levin, Zachary A.;
Alfaro, Iván E.;
Imhof, Axel;
Almouzni, Geneviéve;
Loyola, Alejandra

Publication type:

Article

Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11684, doi. 10.1093/nar/gkx773

By:

Manandhar, Dinesh;
Lingyun Song;
Kabadi, Ami;
Kwon, Jennifer B.;
Edsall, Lee E.;
Ehrlich, Melanie;
Tsumagari, Koji;
Gersbach, Charles A.;
Crawford, Gregory E.;
Gordân, Raluca

Publication type:

Article

Histone chaperone HIRA deposits histone H3.3 onto foreign viral DNA and contributes to anti-viral intrinsic immunity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11673, doi. 10.1093/nar/gkx771

By:

Rai, Taranjit Singh;
Glass, Mandy;
Cole, John J.;
Rather, Mohammad I.;
Marsden, Morgan;
Neilson, Matthew;
Brock, Claire;
Humphreys, Ian R.;
Everett, Roger D.;
Adams, Peter D.

Publication type:

Article

A pathway for low zinc homeostasis that is conserved in animals and acts in parallel to the pathway for high zinc homeostasis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11658, doi. 10.1093/nar/gkx762

By:

Dietrich, Nicholas;
Schneider, Daniel L.;
Kornfeld, Kerry

Publication type:

Article

Multi-dimensional histone methylations for coordinated regulation of gene expression under hypoxia.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11643, doi. 10.1093/nar/gkx747

By:

Seongyeol Lee;
Jieon Lee;
Sehyun Chae;
Yunwon Moon;
Ho-Youl Lee;
Bongju Park;
Eun Gyeong Yang;
Daehee Hwang;
Hyunsung Park

Publication type:

Article

Histone H1 depletion triggers an interferon response in cancer cells via activation of heterochromatic repeats.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11622, doi. 10.1093/nar/gkx746

By:

Izquierdo-Bouldstridge, Andrea;
Bustillos, Alberto;
Bonet-Costa, Carles;
Aribau-Miralbés, Patricia;
García-Gomis, Daniel;
Dabad, Marc;
Esteve-Codina, Anna;
Pascual-Reguant, Laura;
Peiró, Sandra;
Esteller, Manel;
Murtha, Matthew;
Millán-Ariño, Lluís;
Jordan, Albert

Publication type:

Article

Cis-regulatory landscapes of four cell types of the retina.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11607, doi. 10.1093/nar/gkx923

By:

Hartl, Dominik;
Krebs, Arnaud R.;
Jüttner, Josephine;
Roska, Botond;
Schübeler, Dirk

Publication type:

Article

N<sup>6</sup>-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11594, doi. 10.1093/nar/gkx883

By:

Yuanyuan Wang;
Xiao Chen;
Yalan Sheng;
Yifan Liu;
Shan Gao

Publication type:

Article

Transcriptional accuracy modeling suggests two-step proofreading by RNA polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11582, doi. 10.1093/nar/gkx849

By:

Mellenius, Harriet;
Ehrenberg, Måns

Publication type:

Article

TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11570, doi. 10.1093/nar/gkx815

By:

Zhen Tan;
Yinghan Fu;
Sharma, Gaurav;
Mathews, David H.

Publication type:

Article

cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11559, doi. 10.1093/nar/gkx814

By:

Martin-Herranz, Daniel E.;
Ribeiro, António J. M.;
Krueger, Felix;
Thornton, Janet M.;
Reik, Wolf;
Stubbs, Thomas M.

Publication type:

Article

Signal recognition particle binds to translating ribosomes before emergence of a signal anchor sequence.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11558, doi. 10.1093/nar/gkx888

By:

Mercier, Evan;
Holtkamp, Wolf;
Rodnina, Marina V.;
Wintermeyer, Wolfgang

Publication type:

Article

Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11547, doi. 10.1093/nar/gkx784

By:

Gürsoy, Gamze;
Yun Xu;
Kenter, Amy L.;
Jie Liang

Publication type:

Article

2'-Fluoroarabinonucleic acid modification traps G-quadruplex and i-motif structures in human telomeric DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11535, doi. 10.1093/nar/gkx838

By:

Assi, Hala Abou;
El-Khoury, Roberto;
González, Carlos;
Damha, Masad J.

Publication type:

Article

Exponential propagation of large circular DNA by reconstitution of a chromosome-replication cycle.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11525, doi. 10.1093/nar/gkx822

By:

Masayuki Su'etsugu;
Hiraku Takada;
Tsutomu Katayama;
Hiroko Tsujimoto

Publication type:

Article

Measuring deaminated nucleotide surveillance enzyme ITPA activity with an ATP-releasing nucleotide chimera.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11515, doi. 10.1093/nar/gkx774

By:

Ji, Debin;
Stepchenkova, Elena I.;
Jian Cui;
Menezes, Miriam R.;
Pavlov, Youri I.;
Kool, Eric T.

Publication type:

Article

Confronting the catalytic dark matter encoded by sequenced genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11495, doi. 10.1093/nar/gkx937

By:

Ellens, Kenneth W.;
Christian, Nils;
Singh, Charandeep;
Satagopam, Venkata P.;
May, Patrick;
Linster, Carole L.

Publication type:

Article

Systematic classification of the His-Me finger superfamily.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11479, doi. 10.1093/nar/gkx924

By:

Jablonska, Jagoda;
Matelska, Dorota;
Steczkiewicz, Kamil;
Ginalski, Krzysztof

Publication type:

Article

A single active site in the mariner transposase cleaves DNA strands of opposite polarity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 11467, doi. 10.1093/nar/gkx826

By:

Bouuaert, Corentin Claeys;
Chalmers, Ronald

Publication type:

Article

Optimized light-inducible transcription in mammalian cells using Flavin Kelch-repeat F-box1/GIGANTEA and CRY2/CIB1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx804

By:

Quejada, Jose R.;
Park, Seon-Hye E.;
Awari, Daniel W.;
Fan Shi;
Yamamoto, Hannah E.;
Fuun Kawano;
Jung, Juergen C.;
Masayuki Yazawa

Publication type:

Article

CRISPR/Cas9-based genome editing for simultaneous interference with gene expression and protein stability.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx797

By:

Martínez, Virginia;
Lauritsen, Ida;
Hobel, Tonja;
Songyuan Li;
Nielsen, Alex Toftgaard;
Nørholm, Morten H. H.

Publication type:

Article

Individual-specific edge-network analysis for disease prediction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx787

By:

Xiangtian Yu;
Jingsong Zhang;
Shaoyan Sun;
Xin Zhou;
Tao Zeng;
Luonan Chen

Publication type:

Article

Towards enhanced and interpretable clustering/classification in integrative genomics.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx767

By:

Yang Young Lu;
Jinchi Lv;
Fuhrman, Jed A.;
Fengzhu Sun

Publication type:

Article

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx758

By:

Ndah, Elvis;
Jonckheere, Veronique;
Giess, Adam;
Valen, Eivind;
Menschaert, Gerben;
Van Damme, Petra

Publication type:

Article

Bidirectional approaches for optogenetic regulation of gene expression in mammalian cells using Arabidopsis cryptochrome 2.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 20, p. 1, doi. 10.1093/nar/gkx260

By:

Pathak, Gopal P.;
Spiltoir, Jessica I.;
Höglund, Camilla;
Polstein, Lauren R.;
Heine-Koskinen, Sari;
Gersbach, Charles A.;
Rossi, Jari;
Tucker, Chandra L.

Publication type:

Article