Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 2

Results: 47

Crystal structure of Pseudomonas aeruginosa RsaL bound to promoter DNA reaffirms its role as a global regulator involved in quorum-sensing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 699, doi. 10.1093/nar/gkw954

By:

Huaping Kang;
Jianhua Gan;
Jingru Zhao;
Weina Kong;
Jing Zhang;
Miao zhu;
Fan Li;
Yaqin Song;
Jin Qin;
Haihua Liang

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 2, p. 1026, doi. 10.1093/nar/gkw1126
Publication type:: Article

Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1015, doi. 10.1093/nar/gkw1194

By:

Xiang Meng;
Firczuk, Helena;
Pietroni, Paola;
Westbrook, Richard;
Dacheux, Estelle;
Mendes, Pedro;
McCarthy, John E. G.

Publication type:

Article

Engineering robust and tunable spatial structures with synthetic gene circuits.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1005, doi. 10.1093/nar/gkw1045

By:

Wentao Kong;
Blanchard, Andrew E.;
Chen Liao;
Ting Lu

Publication type:

Article

Mg<sup>2+</sup> ions: do they bind to nucleobase nitrogens?

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 987, doi. 10.1093/nar/gkw1175

By:

Leonarski, Filip;
D'Ascenzo, Luigi;
Auffinger, Pascal

Publication type:

Article

Structural insights into dynamics of RecU-HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 975, doi. 10.1093/nar/gkw1165

By:

Khavnekar, Sagar;
Dantu, Sarath Chandra;
Sedelnikova, Svetlana;
Ayora, Sylvia;
Rafferty, John;
Kale, Avinash

Publication type:

Article

Structural insights into NusG regulating transcription elongation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 968, doi. 10.1093/nar/gkw1159

By:

Liu, Bin;
Steitz, Thomas A.

Publication type:

Article

DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 951, doi. 10.1093/nar/gkw1147

By:

Chakraborty, Arka;
Lyonnais, Sébastien;
Battistini, Federica;
Hospital, Adam;
Medici, Giorgio;
Prohens, Rafel;
Orozco, Modesto;
Vilardell, Josep;
Solà, Maria

Publication type:

Article

Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 938, doi. 10.1093/nar/gkw792

By:

Mauri, Marta;
Kirchner, Marieluise;
Aharoni, Reuven;
Mattioli, Camilla Ciolli;
van den Bruck, David;
Gutkovitch, Nadya;
Modepalli, Vengamanaidu;
Selbach, Matthias;
Moran, Yehu;
Chekulaeva, Marina

Publication type:

Article

In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 926, doi. 10.1093/nar/gkw787

By:

Plochowietz, Anne;
Farrell, Ian;
Smilansky, Zeev;
Cooperman, Barry S.;
Kapanidis, Achillefs N.

Publication type:

Article

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 915, doi. 10.1093/nar/gkw786

By:

Reimann, Viktoria;
Alkhnbashi, Omer S.;
Saunders, Sita J.;
Scholz, Ingeborg;
Hein, Stephanie;
Backofen, Rolf;
Hess, Wolfgang R.

Publication type:

Article

Oxidative stress controls the choice of alternative last exons via a Brahma-BRCA1-CstF pathway.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 902, doi. 10.1093/nar/gkw780

By:

Fontana, Gabriele A.;
Rigamonti, Aurora;
Lenzken, Silvia C.;
Filosa, Giuseppe;
Alvarez, Reinaldo;
Calogero, Raffaele;
Bianchi, Marco E.;
Barabino, Silvia M. L.

Publication type:

Article

Single molecule identification of homology-dependent interactions between long ssRNA and dsDNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 894, doi. 10.1093/nar/gkw758

By:

Chenli Liu;
Danilowicz, Claudia;
Kleckner, Nancy;
Prentiss, Mara

Publication type:

Article

Computational prediction of regulatory, premature transcription termination in bacteria.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 886, doi. 10.1093/nar/gkw749

By:

Millman, Adi;
Dar, Daniel;
Shamir, Maya;
Sorek, Rotem

Publication type:

Article

Base-pair opening dynamics of primary miR156a using NMR elucidates structural determinants important for its processing level and leaf number phenotype in Arabidopsis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 875, doi. 10.1093/nar/gkw747

By:

Wanhui Kim;
Hee-Eun Kim;
Ae-Ree Lee;
Jun, A. Rim;
Myeong Gyo Jung;
Ji Hoon Ahn;
Joon-Hwa Lee

Publication type:

Article

Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 861, doi. 10.1093/nar/gkw1157

By:

Ramachandran, Aparna;
Basu, Urmimala;
Sultana, Shemaila;
Nandakumar, Divya;
Patel, Smita S.

Publication type:

Article

The Rrp6 C-terminal domain binds RNA and activates the nuclear RNA exosome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 846, doi. 10.1093/nar/gkw1152

By:

Wasmuth, Elizabeth V.;
Lima, Christopher D.

Publication type:

Article

Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 832, doi. 10.1093/nar/gkw1198

By:

Chang, Yiming K.;
Srivastava, Yogesh;
Caizhen Hu;
Joyce, Adam;
Xiaoxiao Yang;
Zheng Zuo;
Havranek, James J.;
Stormo, Gary D.;
Jauch, Ralf

Publication type:

Article

Molecular basis for the autonomous promotion of cell proliferation by angiogenin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 818, doi. 10.1093/nar/gkw1192

By:

Hoang, Trish T.;
Raines, Ronald T.

Publication type:

Article

Proteomic analysis of the human KEOPS complex identifies C14ORF142 as a core subunit homologous to yeast Gon7.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 805, doi. 10.1093/nar/gkw1181

By:

Wan, Leo C. K.;
Maisonneuve, Pierre;
Szilard, Rachel K.;
Lambert, Jean-Philippe;
Ng, Timothy F.;
Manczyk, Noah;
Hao Huang;
Laister, Rob;
Caudy, Amy A.;
Gingras, Anne-Claude;
Durocher, Daniel;
Sicheri, Frank

Publication type:

Article

Transfer RNA is highly unstable during early amino acid starvation in Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 793, doi. 10.1093/nar/gkw1169

By:

Lo Svenningsen, Sine;
Kongstad, Mette;
Stenum, Thomas Søndergaard;
Muñoz-Gómez, Ana J.;
Sørensen, Michael A.

Publication type:

Article

In vivo expression technology and 5' end mapping of the Borrelia burgdorferi transcriptome identify novel RNAs expressed during mammalian infection.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 775, doi. 10.1093/nar/gkw1180

By:

Adams, Philip P.;
Avile, Carlos Flores;
Popitsch, Niko;
Bilusic, Ivana;
Schroeder, Renée;
Lybecker, Meghan;
Jewett, Mollie W.

Publication type:

Article

Homologous recombination mediated by the mycobacterial AdnAB helicase without end resection by the AdnAB nucleases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 762, doi. 10.1093/nar/gkw1130

By:

Gupta, Richa;
Unciuleac, Mihaela-Carmen;
Shuman, Stewart;
Glickman, Michael S.

Publication type:

Article

Protein dynamics of human RPA and RAD51 on ssDNA during assembly and disassembly of the RAD51 filament.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 749, doi. 10.1093/nar/gkw1125

By:

Chu Jian Ma;
Gibb, Bryan;
Young Ho Kwon;
Patrick Sung;
Greene, Eric C.

Publication type:

Article

Regulation of oxidized base damage repair by chromatin assembly factor 1 subunit A.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 739, doi. 10.1093/nar/gkw1024

By:

Chunying Yang;
Shiladitya Sengupta;
Hegde, Pavana M.;
Mitra, Joy;
Shuai Jiang;
Holey, Brooke;
Sarker, Altaf H.;
Miaw-Sheue Tsai;
Hegde, Muralidhar L.;
Mitra, Sankar

Publication type:

Article

Ubiquitylation-dependent regulation of NEIL1 by Mule and TRIM26 is required for the cellular DNA damage response.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 726, doi. 10.1093/nar/gkw959

By:

Edmonds, Matthew J.;
Carter, Rachel J.;
Nickson, Catherine M.;
Williams, Sarah C.;
Parsons, Jason L.

Publication type:

Article

The β-isoform of BCCIP promotes ADP release from the RAD51 presynaptic filament and enhances homologous DNA pairing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 711, doi. 10.1093/nar/gkw877

By:

Kelso, Andrew A.;
Goodson, Steven D.;
Watts, Leah E.;
Ledford, LeAnna L.;
Waldvoge, Sarah M.;
Diehl, J. Nathaniel;
Shah, Shivani B.;
Say, Amanda F.;
White, Julie D.;
Sehorn, Michael G.

Publication type:

Article

Dynamic unwrapping of nucleosomes by HsRAD51 that includes sliding and rotational motion of histone octamers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 685, doi. 10.1093/nar/gkw920

By:

Senavirathne, Gayan;
Mahto, Santosh K.;
Hanne, Jeungphill;
O'Brian, Daniel;
Fishel, Richard

Publication type:

Article

Concerted effects of heterogeneous nuclear ribonucleoprotein C1/C2 to control vitamin D-directed gene transcription and RNA splicing in human bone cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 606, doi. 10.1093/nar/gkw851

By:

Rui Zhou;
Juw Won Park;
Chun, Rene F.;
Lisse, Thomas S.;
Garcia, Alejandro J.;
Zavala, Kathryn;
Sea, Jessica L.;
Zhi-xiang Lu;
Jianzhong Xu;
Adams, John S.;
Yi Xing;
Hewison, Martin

Publication type:

Article

Intron 1 GATA site enhances ALAS2 expression indispensably during erythroid differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 657, doi. 10.1093/nar/gkw901

By:

Yingchi Zhang;
Jingliao Zhang;
Wenbin An;
Yang Wan;
Shihui Ma;
Jie Yin;
Xichuan Li;
Jie Gao;
Weiping Yuan;
Ye Guo;
Engel, James Douglas;
Lihong Shi;
Tao Cheng;
Xiaofan Zhu

Publication type:

Article

sNASP and ASF1A function through both competitive and compatible modes of histone binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 643, doi. 10.1093/nar/gkw892

By:

Bowman, Andrew;
Koide, Akiko;
Goodman, Jay S.;
Colling, Meaghan E.;
Zinne, Daria;
Koide, Shohei;
Ladurner, Andreas G.

Publication type:

Article

RNA secondary structures regulate three steps of Rho-dependent transcription termination within a bacterial mRNA leader.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 631, doi. 10.1093/nar/gkw889

By:

Kriner, Michelle A.;
Groisman, Eduardo A.

Publication type:

Article

Crosstalk between androgen and pro-inflammatory signaling remodels androgen receptor and NF-ĸB cistrome to reprogram the prostate cancer cell transcriptome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 619, doi. 10.1093/nar/gkw855

By:

Malinen, Marjo;
Niskanen, Einari A.;
Kaikkonen, Minna U.;
Palvimo, Jorma J.

Publication type:

Article

TET1 modulates H4K16 acetylation by controlling auto-acetylation of hMOF to affect gene regulation and DNA repair function.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 672, doi. 10.1093/nar/gkw919

By:

Jianing Zhong;
Xianfeng Li;
Wanshi Cai;
Yan Wang;
Shanshan Dong;
Jie Yang;
Jian'an Zhang;
Nana Wu;
Yuanyuan Li;
Fengbiao Mao;
Cheng Zeng;
Jinyu Wu;
Xingzhi Xu;
Zhong Sheng Sun

Publication type:

Article

RPAN: rice pan-genome browser for ~3000 rice genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 597, doi. 10.1093/nar/gkw958

By:

Chen Sun;
Zhiqiang Hu;
Tianqing Zheng;
Kuangchen Lu;
Yue Zhao;
Wensheng Wang;
Jianxin Shi;
Chunchao Wang;
Jinyuan Lu;
Dabing Zhang;
Zhikang Li;
Chaochun Wei

Publication type:

Article

Epigenetic and genetic deregulation in cancer target distinct signaling pathway domains.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 583, doi. 10.1093/nar/gkw1100

By:

Yang Gao;
Teschendorff, Andrew E.

Publication type:

Article

Cooperative genomic alteration network reveals molecular classification across 12 major cancer types.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 567, doi. 10.1093/nar/gkw1087

By:

Hongyi Zhang;
Yulan Deng;
Yong Zhang;
Yanyan Ping;
Hongying Zhao;
Lin Pang;
Xinxin Zhang;
Li Wang;
Chaohan Xu;
Yun Xiao;
Xia Li

Publication type:

Article

Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 556, doi. 10.1093/nar/gkw1085

By:

Leclercq, Mickael;
Diallo, Abdoulaye Baniré;
Blanchette, Mathieu

Publication type:

Article

Elasticity of the transition state for oligonucleotide hybridization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 547, doi. 10.1093/nar/gkw1173

By:

Whitley, Kevin D.;
Comstock, Matthew J.;
Chemla, Yann R.

Publication type:

Article

A DNA nanoswitch-controlled reversible nanosensor.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 541, doi. 10.1093/nar/gkw1146

By:

Pai Peng;
Lili Shi;
Huihui Wang;
Tao Li

Publication type:

Article

C<sub>3</sub>-symmetric opioid scaffolds are pH-responsive DNA condensation agents.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 527, doi. 10.1093/nar/gkw1097

By:

McStay, Natasha;
Molphy, Zara;
Coughlan, Alan;
Cafolla, Attilio;
McKee, Vickie;
Gathergood, Nicholas;
Kellett, Andrew

Publication type:

Article

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 513, doi. 10.1093/nar/gkw1190

By:

Andreev, Dmitry E.;
O'Connor, Patrick B. F.;
Loughran, Gary;
Dmitriev, Sergey E.;
Baranov, Pavel V.;
Shatsky, Ivan N.

Publication type:

Article

DNA-linked Inhibitor Antibody Assay (DIANA) for sensitive and selective enzyme detection and inhibitor screening.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw853

By:

Navrátil, Václav;
Schimer, Jiří;
Tykvart, Jan;
Knedlík, Tomáš;
Vik, Viktor;
Majer, Pavel;
Konvalinka, Jan;
Šácha, Pavel

Publication type:

Article

Flexible expressed region analysis for RNA-seq with derfinder.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw852

By:

Collado-Torres, Leonardo;
Nellore, Abhinav;
Frazee, Alyssa C.;
Wilks, Christopher;
Love, Michael I.;
Langmead, Ben;
Irizarry, Rafael A.;
Leek, Jeffrey T.;
Jaffe, Andrew E.

Publication type:

Article

A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw849

By:

Ogris, Christoph;
Guala, Dimitri;
Helleday, Thomas;
Sonnhammer, Erik L. L.

Publication type:

Article

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw837

By:

Zolfo, Moreno;
Tett, Adrian;
Jousson, Olivier;
Donati, Claudio;
Segata, Nicola

Publication type:

Article

Ribonuclease selection for ribosome profiling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw822

By:

Gerashchenko, Maxim V.;
Gladyshev, Vadim N.

Publication type:

Article