Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 19

Results: 45

Proteomic identification of histone post-translational modifications and proteins enriched at a DNA double-strand break.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10923, doi. 10.1093/nar/gkx844

By:

Pingping Wang;
Byrum, Stephanie;
Fowler, Faith C.;
Pal, Sangita;
Tackett, Alan J.;
Tyler, Jessica K.

Publication type:

Article

Role of free DNA ends and protospacer adjacent motifs for CRISPR DNA uptake in Pyrococcus furiosus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11281, doi. 10.1093/nar/gkx839

By:

Shiimori, Masami;
Garrett, Sandra C.;
Chambers, Dwain P.;
Glover III, Claiborne V. C.;
Graveley, Brenton R.;
Terns, Michael P.

Publication type:

Article

A G-quadruplex motif in an envelope gene promoter regulates transcription and virion secretion in HBV genotype B.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11268, doi. 10.1093/nar/gkx823

By:

Biswas, Banhi;
Kandpal, Manish;
Vivekanandan, Perumal

Publication type:

Article

Impact of enhanced metabolic stability on pharmacokinetics and pharmacodynamics of GalNAc-siRNA conjugates.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10969, doi. 10.1093/nar/gkx818

By:

Nair, Jayaprakash K.;
Attarwala, Husain;
Sehgal, Alfica;
Qianfan Wang;
Aluri, Krishna;
Xuemei Zhang;
Minggeng Gao;
Ju Liu;
Indrakanti, Ramesh;
Schofield, Sally;
Kretschmer, Philip;
Brown, Christopher R.;
Gupta, Swati;
Willoughby, Jennifer L. S.;
Boshar, Julie A.;
Jadhav, Vasant;
Charisse, Klaus;
Zimmermann, Tracy;
Fitzgerald, Kevin;
Manoharan, Muthiah

Publication type:

Article

Insights into RNA polymerase catalysis and adaptive evolution gained from mutational analysis of a locus conferring rifampicin resistance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11327, doi. 10.1093/nar/gkx813

By:

Yurieva, Olga;
Nikiforov Jr, Vadim;
Nikiforov, Vadim;
O'Donnell, Michael;
Mustaev, Arkady

Publication type:

Article

Altering the speed of a DNA packaging motor from bacteriophage T4.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11437, doi. 10.1093/nar/gkx809

By:

Siying Lin;
Alam, Tanfis I.;
Kottadiel, Vishal I.;
VanGessel, Carl J.;
Wei-Chun Tang;
Chemla, Yann R.;
Rao, Venigalla B.

Publication type:

Article

Embraced by eIF3: structural and functional insights into the roles of eIF3 across the translation cycle.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10948, doi. 10.1093/nar/gkx805

By:

Valášek, Leoš Shivaya;
Zeman, Jakub;
Wagner, Susan;
Beznosková, Petra;
Pavlíková, Zuzana;
Mohammad, Mahabub Pasha;
Hronová, Vladislava;
Herrmannová, Anna;
Hashem, Yaser;
Gunišová, Stanislava

Publication type:

Article

RUNX2 expression in thyroid and breast cancer requires the cooperation of three non-redundant enhancers under the control of BRD4 and c-JUN.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11249, doi. 10.1093/nar/gkx802

By:

Sancisi, Valentina;
Manzotti, Gloria;
Gugnoni, Mila;
Rossi, Teresa;
Gandolfi, Greta;
Gobbi, Giulia;
Torricelli, Federica;
Catellani, Francesca;
do Valle, Italo Faria;
Remondini, Daniel;
Castellani, Gastone;
Ragazzi, Moira;
Piana, Simonetta;
Ciarrocchi, Alessia

Publication type:

Article

Insights into interplay between rexinoid signaling and myogenic regulatory factor-associated chromatin state in myogenic differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11236, doi. 10.1093/nar/gkx800

By:

Hamed, Munerah;
Khilji, Saadia;
Dixon, Katherine;
Blais, Alexandre;
Ioshikhes, Ilya;
Jihong Chen;
Qiao Li

Publication type:

Article

Naturally existing isoforms of miR-222 have distinct functions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11371, doi. 10.1093/nar/gkx788

By:

Feng Yu;
Pillman, Katherine A.;
Neilsen, Corine T.;
Toubia, John;
Lawrence, David M.;
Tsykin, Anna;
Gantier, Michael P.;
Callen, David F.;
Goodall, Gregory J.;
Bracken, Cameron P.

Publication type:

Article

Activator Protein-1: redox switch controlling structure and DNA-binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11425, doi. 10.1093/nar/gkx795

By:

Zhou Yin;
Machius, Mischa;
Nestler, Eric J.;
Rudenko, Gabby

Publication type:

Article

N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3′-end processing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11356, doi. 10.1093/nar/gkx778

By:

Bartosovic, Marek;
Molares, Helena Covelo;
Gregorova, Pavlina;
Hrossova, Dominika;
Kudla, Grzegorz;
Vanacova, Stepanka

Publication type:

Article

Catalytic properties of RNA polymerases IV and V: accuracy, nucleotide incorporation and rNTP/dNTP discrimination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11315, doi. 10.1093/nar/gkx794

By:

Marasco, Michelle;
Weiyi Li;
Lynch, Michael;
Pikaard, Craig S.

Publication type:

Article

A novel TPR-BEN domain interaction mediates PICH-BEND3 association.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11413, doi. 10.1093/nar/gkx792

By:

Pitchai, Ganesha P.;
Kaulich, Manuel;
Bizard, Anna H.;
Mesa, Pablo;
Qi Yao;
Sarlos, Kata;
Streicher, Werner W.;
Nigg, Erich A.;
Montoya, Guillermo;
Hickson, Ian D.

Publication type:

Article

A 'new lease of life': FnCpf1 possesses DNA cleavage activity for genome editing in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11295, doi. 10.1093/nar/gkx783

By:

Mengjun Tu;
Li Lin;
Yilu Cheng;
Xiubin He;
Huihui Sun;
Haihua Xie;
Junhao Fu;
Changbao Liu;
Jin Li;
Ding Chen;
Haitao Xi;
Dongyu Xue;
Qi Liu;
Junzhao Zhao;
Caixia Gao;
Zongming Song;
Jia Qu;
Feng Gu

Publication type:

Article

Cmr1 enables efficient RNA and DNA interference of a III-B CRISPR-Cas system by binding to target RNA and crRNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11305, doi. 10.1093/nar/gkx791

By:

Yingjun Li;
Yan Zhang;
Jinzhong Lin;
Saifu Pan;
Wenyuan Han;
Nan Peng;
Yun Xiang Liang;
Qunxin She

Publication type:

Article

Initiating ribosomes and a 5′/3′-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11386, doi. 10.1093/nar/gkx793

By:

Braun, Frédérique;
Durand, Sylvain;
Condon, Ciarán

Publication type:

Article

Addressable configurations of DNA nanostructures for rewritable memory.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11459, doi. 10.1093/nar/gkx777

By:

Chandrasekaran, Arun Richard;
Levchenko, Oksana;
Patel, Dhruv S.;
MacIsaac, Molly;
Halvorsen, Ken

Publication type:

Article

In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11449, doi. 10.1093/nar/gkx776

By:

Kei Fujiwara;
Tsunehito Sawamura;
Tatsuya Niwa;
Tatsuki Deyama;
Nomura, Shin-ichiro M.;
Hideki Taguchi;
Nobuhide Doi

Publication type:

Article

The FASTK family of proteins: emerging regulators of mitochondrial RNA biology.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10941, doi. 10.1093/nar/gkx772

By:

Jourdain, Alexis A.;
Popow, Johannes;
de la Fuente, Miguel A.;
Martinou, Jean-Claude;
Anderson, Paul;
Simarro, Maria

Publication type:

Article

Separation and assembly of deep sequencing data into discrete sub-population genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10989, doi. 10.1093/nar/gkx755

By:

Karagiannis, Konstantinos;
Simonyan, Vahan;
Chumakov, Konstantin;
Mazumder, Raja

Publication type:

Article

The RNA chaperone La promotes pre-TRNA maturation via indiscriminate binding of both native and misfolded targets.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11341, doi. 10.1093/nar/gkx764

By:

Vakiloroayaei, Ana;
Shah, Neha S.;
Oeffinger, Marlene;
Bayfield, Mark A.

Publication type:

Article

Network embedding-based representation learning for single cell RNA-seq data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx750

By:

Xiangyu Li;
Weizheng Chen;
Yang Chen;
Xuegong Zhang;
Jin Gu;
Zhang, Michael Q.

Publication type:

Article

Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11019, doi. 10.1093/nar/gkx757

By:

Chawla, Mohit;
Chermak, Edrisse;
Qingyun Zhang;
Bujnicki, Janusz M.;
Oliva, Romina;
Cavallo, Luigi

Publication type:

Article

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11004, doi. 10.1093/nar/gkx756

By:

Heller, David;
Krestel, Ralf;
Ohler, Uwe;
Vingron, Martin;
Marsico, Annalisa

Publication type:

Article

Involvement of G-triplex and G-hairpin in the multi-pathway folding of human telomeric G-quadruplex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11401, doi. 10.1093/nar/gkx766

By:

Xi-Miao Hou;
Yi-Ben Fu;
Wen-Qiang Wu;
Lei Wang;
Fang-Yuan Teng;
Ping Xie;
Peng-Ye Wang;
Xu-Guang Xi

Publication type:

Article

Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 10978, doi. 10.1093/nar/gkx754

By:

Cheng Jia;
Yu Hu;
Kelly, Derek;
Junhyong Kim;
Mingyao Li;
Zhang, Nancy R.

Publication type:

Article

Regulation of mitotic recombination between DNA repeats in centromeres.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11222, doi. 10.1093/nar/gkx763

By:

Zafar, Faria;
Okita, Akiko K.;
Onaka, Atsushi T.;
Jie Su;
Yasuhiro Katahira;
Jun-ichi Nakayama;
Takahashi, Tatsuro S.;
Hisao Masukata;
Takuro Nakagawa

Publication type:

Article

CRISPR-mediated isolation of specific megabase segments of genomic DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx749

By:

Bennett-Baker, Pamela E.;
Mueller, Jacob L.

Publication type:

Article

Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11159, doi. 10.1093/nar/gkx741

By:

Hult, Caitlin;
Adalsteinsson, David;
Vasquez, Paula A.;
Lawrimore, Josh;
Bennett, Maggie;
York, Alyssa;
Cook, Diana;
Yeh, Elaine;
Forest, Mark Gregory;
Bloom, Kerry

Publication type:

Article

Programming sites of meiotic crossovers using Spo11 fusion proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx739

By:

Sarno, Roberta;
Vicq, Yoan;
Uematsu, Norio;
Luka, Marine;
Lapierre, Clement;
Carroll, Dana;
Bastianelli, Giacomo;
Serero, Alexandre;
Nicolas, Alain

Publication type:

Article

The PRMT5/WDR77 complex regulates alternative splicing through ZNF326 in breast cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11106, doi. 10.1093/nar/gkx727

By:

Rengasamy, Madhumitha;
Fan Zhang;
Vashisht, Ajay;
Won-Min Song;
Aguilo, Francesca;
Yifei Sun;
SiDe Li;
Weijia Zhang;
Bin Zhang;
Wohlschlegel, James A.;
Walsh, Martin J.

Publication type:

Article

HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx735

By:

Xiao-Tao Wang;
Wang Cui;
Cheng Peng

Publication type:

Article

Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11131, doi. 10.1093/nar/gkx733

By:

Sarkar, Paramita;
Switzer, Amy;
Peters, Christine;
Pogliano, Joe;
Wigneshweraraj, Sivaramesh

Publication type:

Article

Short inverted repeats contribute to localized mutability in human somatic cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11213, doi. 10.1093/nar/gkx731

By:

Xueqing Zou;
Morganella, Sandro;
Glodzik, Dominik;
Davies, Helen;
Yilin Li;
Stratton, Michael R.;
Nik-Zainal, Serena

Publication type:

Article

DNA residence time is a regulatory factor of transcription repression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11121, doi. 10.1093/nar/gkx728

By:

Clauß, Karen;
Popp, Achim P.;
Schulze, Lena;
Hettich, Johannes;
Reisser, Matthias;
Torres, Laura Escoter;
Uhlenhaut, N. Henriette;
Gebhardt, J. Christof M.

Publication type:

Article

Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11144, doi. 10.1093/nar/gkx737

By:

Bunina, Daria;
Štefl, Martin;
Huber, Florian;
Khmelinskii, Anton;
Meurer, Matthias;
Barry, Joseph D.;
Kats, Ilia;
Kirrmaier, Daniel;
Huber, Wolfgang;
Knop, Michael

Publication type:

Article

Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11088, doi. 10.1093/nar/gkx724

By:

Nilson, Kyle A.;
Lawson, Christine K.;
Mullen, Nicholas J.;
Ball, Christopher B.;
Spector, Benjamin M.;
Meier, Jeffery L.;
Price, David H.

Publication type:

Article

Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11193, doi. 10.1093/nar/gkx723

By:

Malfatti, Matilde Clarissa;
Balachander, Sathya;
Antoniali, Giulia;
Kyung Duk Koh;
Saint-Pierre, Christine;
Gasparutto, Didier;
Hyongi Chon;
Crouch, Robert J.;
Storici, Francesca;
Tell, Gianluca

Publication type:

Article

Developmentally regulated higher-order chromatin interactions orchestrate B cell fate commitment.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11070, doi. 10.1093/nar/gkx722

By:

Boya, Ravi;
Yadavalli, Anurupa Devi;
Nikhat, Sameena;
Kurukuti, Sreenivasulu;
Palakodeti, Dasaradhi;
Pongubala, Jagan M. R.

Publication type:

Article

p53 controls expression of the DNA deaminase APOBEC3B to limit its potential mutagenic activity in cancer cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11056, doi. 10.1093/nar/gkx721

By:

Periyasamy, Manikandan;
Singh, Anup K.;
Gemma, Carolina;
Kranjec, Christian;
Farzan, Raed;
Leach, Damien A.;
Navaratnam, Naveenan;
Pálinkás, Hajnalka L.;
Vértessy, Beata G.;
Fenton, Tim R.;
Doorbar, John;
Fuller-Pace, Frances;
Meek, David W.;
Coombes, R. Charles;
Buluwela, Laki;
Ali, Simak

Publication type:

Article

Transcription-translation coupling: direct interactions of RNA polymerase with ribosomes and ribosomal subunits.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11043, doi. 10.1093/nar/gkx719

By:

Fan, Haitian;
Conn, Adam B.;
Williams, Preston B.;
Diggs, Stephen;
Hahm, Joseph;
Gamper Jr, Howard B.;
Ya-Ming Hou;
O'Leary, Seán E.;
Yinsheng Wang;
Blaha, Gregor M.

Publication type:

Article

Functional impacts of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine at a single hemi-modified CpG dinucleotide in a gene promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11033, doi. 10.1093/nar/gkx718

By:

Kitsera, Nataliya;
Allgayer, Julia;
Parsa, Edris;
Geier, Nadine;
Rossa, Martin;
Carell, Thomas;
Khobta, Andriy

Publication type:

Article

Kinetics of poly(ADP-ribosyl)ation, but not PARP1 itself, determines the cell fate in response to DNA damage in vitro and in vivo.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 11174, doi. 10.1093/nar/gkx717

By:

Schuhwerk, Harald;
Bruhn, Christopher;
Siniuk, Kanstantsin;
Min, Wookee;
Erener, Suheda;
Grigaravicius, Paulius;
Krüger, Annika;
Ferrari, Elena;
Zubel, Tabea;
Lazaro, David;
Monajembashi, Shamci;
Kiesow, Kirstin;
Kroll, Torsten;
Bürkle, Alexander;
Mangerich, Aswin;
Hottiger, Michael;
Zhao-Qi Wang

Publication type:

Article

Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx712

By:

Bell, John M.;
Lau, Billy T.;
Greer, Stephanie U.;
Wood-Bouwens, Christina;
Xia, Li C.;
Connolly, Ian D.;
Gephart, Melanie H.;
Ji, Hanlee P.

Publication type:

Article