Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 17

Results: 45

Self-biotinylation of DNA G-quadruplexes via intrinsic peroxidase activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9813, doi. 10.1093/nar/gkx765

By:

Einarson, Owen J.;
Sen, Dipankar

Publication type:

Article

Pausing kinetics dominates strand-displacement polymerization by reverse transcriptase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10190, doi. 10.1093/nar/gkx720

By:

Malik, Omri;
Khamis, Hadeel;
Rudnizky, Sergei;
Marx, Ailie;
Kaplan, Ariel

Publication type:

Article

Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9850, doi. 10.1093/nar/gkx716

By:

Benedetti, Fabrizio;
Racko, Dusan;
Dorier, Julien;
Burnier, Yannis;
Stasiak, Andrzej

Publication type:

Article

Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10143, doi. 10.1093/nar/gkx689

By:

Penno, Christophe;
Kumari, Romika;
Baranov, Pavel V.;
van Sinderen, Douwe;
Atkins, John F.

Publication type:

Article

Meta-analysis of transcriptomic datasets identifies genes enriched in the mammalian circadian pacemaker.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9860, doi. 10.1093/nar/gkx714

By:

Brown, Laurence A.;
Williams, John;
Taylor, Lewis;
Thomson, Ross J.;
Nolan, Patrick M.;
Foster, Russell G.;
Peirson, Stuart N.

Publication type:

Article

Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10306, doi. 10.1093/nar/gkx700

By:

Michalska, Karolina;
Gucinski, Grant C.;
Garza-Sánchez, Fernando;
Johnson, Parker M.;
Stols, Lucy M.;
Eschenfeldt, William H.;
Babnigg, Gyorgy;
Low, David A.;
Goulding, Celia W.;
Joachimiak, Andrzej;
Hayes, Christopher S.

Publication type:

Article

The kinetic mechanism of bacterial ribosome recycling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10168, doi. 10.1093/nar/gkx694

By:

Yuanwei Chen;
Akira Kaji;
Hideko Kaji;
Cooperman, Barry S.

Publication type:

Article

Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10103, doi. 10.1093/nar/gkx692

By:

Rhee, Catherine;
Bum-Kyu Lee;
Beck, Samuel;
LeBlanc, Lucy;
Tucker, Haley O.;
Jonghwan Kim

Publication type:

Article

Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10156, doi. 10.1093/nar/gkx690

By:

Penno, Christophe;
Kumari, Romika;
Baranov, Pavel V.;
van Sinderen, Douwe;
Atkins, John F.

Publication type:

Article

Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10321, doi. 10.1093/nar/gkx713

By:

Copp, William;
Denisov, Alexey Y.;
Jingwei Xie;
Noronha, Anne M.;
Liczner, Christopher;
Safaee, Nozhat;
Wilds, Christopher J.;
Gehring, Kalle

Publication type:

Article

The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10293, doi. 10.1093/nar/gkx685

By:

Franco-Echevarría, Elsa;
González-Polo, Noelia;
Zorrilla, Silvia;
Martínez-Lumbreras, Santiago;
Santiveri, Clara M.;
Campos-Olivas, Ramón;
Sánchez, Mar;
Calvo, Olga;
González, Beatriz;
Pérez-Cañadillas, José Manuel

Publication type:

Article

Using neural networks for reducing the dimensions of single-cell RNA-Seq data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 1, doi. 10.1093/nar/gkx681

By:

Chieh Lin;
Jain, Siddhartha;
Kim, Hannah;
Bar-Joseph, Ziv

Publication type:

Article

Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9837, doi. 10.1093/nar/gkx680

By:

Bouvy-Liivrand, Maria;
de Sande, Ana Hernández;
Pölönen, Petri;
Mehtonen, Juha;
Vuorenmaa, Tapio;
Niskanen, Henri;
Sinkkonen, Lasse;
Kaikkonen, Minna Unelma;
Heinäniemi, Merja

Publication type:

Article

paraGSEA: a scalable approach for large-scale gene expression profiling.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 1, doi. 10.1093/nar/gkx679

By:

Shaoliang Peng;
Shunyun Yang;
Xiaochen Bo;
Fei Li

Publication type:

Article

Coexistence of two main folded G-quadruplexes within a single G-rich domain in the EGFR promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10132, doi. 10.1093/nar/gkx678

By:

Greco, Maria L.;
Kotar, Anita;
Rigo, Riccardo;
Cristofari, Camilla;
Plavec, Janez;
Sissi, Claudia

Publication type:

Article

Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10115, doi. 10.1093/nar/gkx674

By:

Guéguéniat, Julia;
Dupin, Adrien F.;
Stojko, Johan;
Beaurepaire, Lionel;
Cianférani, Sarah;
Mackereth, Cameron D.;
Minvielle-Sébastia, Lionel;
Fribourg, Sébastien

Publication type:

Article

An RNA-targeted therapy for dystrophic epidermolysis bullosa.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10259, doi. 10.1093/nar/gkx669

By:

Peking, Patricia;
Koller, Ulrich;
Duarte, Blanca;
Murillas, Rodolfo;
Wolf, Susanne;
Maetzig, Tobias;
Rothe, Michael;
Kocher, Thomas;
García, Marta;
Brachtl, Gabriele;
Schambach, Axel;
Larcher, Fernando;
Reichelt, Julia;
Bauer, Johann W.;
Murauer, Eva M.

Publication type:

Article

TET2- and TDG-mediated changes are required for the acquisition of distinct histone modifications in divergent terminal differentiation of myeloid cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10002, doi. 10.1093/nar/gkx666

By:

Garcia-Gomez, Antonio;
Tianlu Li;
Kerick, Martin;
Català-Moll, Francesc;
Comet, Natalia R.;
Rodríguez-Ubreva, Javier;
de la Rica, Lorenzo;
Branco, Miguel R.;
Martín, Javier;
Ballestar, Esteban

Publication type:

Article

Mechanism of opening a sliding clamp.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10178, doi. 10.1093/nar/gkx665

By:

Douma, Lauren G.;
Yu, Kevin K.;
England, Jennifer K.;
Levitus, Marcia;
Bloom, Linda B.

Publication type:

Article

Direct modulation of T-box riboswitch-controlled transcription by protein synthesis inhibitors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10242, doi. 10.1093/nar/gkx663

By:

Stamatopoulou, Vassiliki;
Apostolidi, Maria;
Shuang Li;
Lamprinou, Katerina;
Papakyriakou, Athanasios;
Jinwei Zhang;
Stathopoulos, Constantinos

Publication type:

Article

A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9990, doi. 10.1093/nar/gkx662

By:

Martinez-Pastor, Mar;
Lancaster, W. Andrew;
Tonner, Peter D.;
Adams, Michael W. W.;
Schmid, Amy K.

Publication type:

Article

Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9823, doi. 10.1093/nar/gkx659

By:

Yu Zhang;
Hardison, Ross C.

Publication type:

Article

Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10284, doi. 10.1093/nar/gkx658

By:

Matzov, Donna;
Eyal, Zohar;
Benhamou, Raphael I.;
Shalev-Benami, Moran;
Halfon, Yehuda;
Krupkin, Miri;
Zimmerman, Ella;
Rozenberg, Haim;
Bashan, Anat;
Fridman, Micha;
Yonath, Ada

Publication type:

Article

Salmonella STM1697 coordinates flagella biogenesis and virulence by restricting flagellar master protein FlhD<sub>4</sub>C<sub>2</sub> from recruiting RNA polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9976, doi. 10.1093/nar/gkx656

By:

Bingqing Li;
Yingying Yue;
Zenglin Yuan;
Fengyu Zhang;
Peng Li;
Nannan Song;
Wei Lin;
Yan Liu;
Yinlong Yang;
Zhihui Li;
Lichuan Gu

Publication type:

Article

The abundance of Fob1 modulates the efficiency of rRFBs to stall replication forks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10089, doi. 10.1093/nar/gkx655

By:

Castán, Alicia;
Hernández, Pablo;
Krimer, Dora B.;
Schvartzman, Jorge B.

Publication type:

Article

Complementation of aprataxin deficiency by base excision repair enzymes in mitochondrial extracts.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10079, doi. 10.1093/nar/gkx654

By:

Çaglayan, Melike;
Prasad, Rajendra;
Krasich, Rachel;
Longley, Matthew J.;
Kei Kadoda;
Masataka Tsuda;
Hiroyuki Sasanuma;
Shunichi Takeda;
Keizo Tano;
Copeland, William C.;
Wilson, Samuel H.

Publication type:

Article

Expression of short hairpin RNAs using the compact architecture of retroviral microRNA genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 1, doi. 10.1093/nar/gkx653

By:

Burke, James M.;
Kincaid, Rodney P.;
Aloisio, Francesca;
Welch, Nicole;
Sullivan, Christopher S.

Publication type:

Article

MutSβ abundance and Msh3 ATP hydrolysis activity are important drivers of CTG•CAG repeat expansions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10068, doi. 10.1093/nar/gkx650

By:

Keogh, Norma;
Chan, Kara Y.;
Guo-Min Li;
Lahue, Robert S.

Publication type:

Article

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 1, doi. 10.1093/nar/gkx648

By:

Zarnegar, Mark A.;
Reinitz, Felicia;
Newman, Aaron M.;
Clarke, Michael F.

Publication type:

Article

ARS2 is a general suppressor of pervasive transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10229, doi. 10.1093/nar/gkx647

By:

Iasillo, Claudia;
Schmid, Manfred;
Yahia, Yousra;
Maqbool, Muhammad A.;
Descostes, Nicolas;
Karadoulama, Evdoxia;
Bertrand, Edouard;
Andrau, Jean-Christophe;
Jensen, Torben Heick

Publication type:

Article

Genome contact map explorer: a platform for the comparison, interactive visualization and analysis of genome contact maps.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 1, doi. 10.1093/nar/gkx644

By:

Kumar, Rajendra;
Sobhy, Haitham;
Stenberg, Per;
Lizana, Ludvig

Publication type:

Article

MAZ induces MYB expression during the exit from quiescence via the E2F site in the MYB promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9960, doi. 10.1093/nar/gkx641

By:

Álvaro-Blanco, Josué;
Urso, Katia;
Chiodo, Yuri;
Martín-Cortâzar, Carla;
Kourani, Omar;
Arco, Pablo Gómez-del;
Rodríguez-Martínez, María;
Calonge, Esther;
Alcamí, José;
Redondo, Juan Miguel;
Iglesias, Teresa;
Campanero, Miguel R.

Publication type:

Article

Preferential microRNA targeting revealed by in vivo competitive binding and differential Argonaute immunoprecipitation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10218, doi. 10.1093/nar/gkx640

By:

Werfel, Stanislas;
Leierseder, Simon;
Ruprecht, Benjamin;
Kuster, Bernhard;
Engelhardt, Stefan

Publication type:

Article

Redundancy between nucleases required for homologous recombination promotes PARP inhibitor resistance in the eukaryotic model organism Dictyostelium.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10056, doi. 10.1093/nar/gkx639

By:

Kolb, Anna-Lena;
Gunn, Alasdair R.;
Lakin, Nicholas D.

Publication type:

Article

Modulation of proteostasis counteracts oxidative stress and affects DNA base excision repair capacity in ATM-deficient cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10042, doi. 10.1093/nar/gkx635

By:

Poletto, Mattia;
Di Yang;
Fletcher, Sally C.;
Vendrell, Iolanda;
Fischer, Roman;
Legrand, Arnaud J.;
Dianov, Grigory L.

Publication type:

Article

Interplay between PTB and miR-1285 at the p53 3′UTR modulates the levels of p53 and its isoform Δ40p53α.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10206, doi. 10.1093/nar/gkx630

By:

Katoch, Aanchal;
George, Biju;
Iyyappan, Amrutha;
Khan, Debjit;
Das, Saumitra

Publication type:

Article

Parallel triplex structure formed between stretched single-stranded DNA and homologous duplex DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10032, doi. 10.1093/nar/gkx628

By:

Jin Chen;
Qingnan Tang;
Shiwen Guo;
Chen Lu;
Shimin Le;
Jie Yan

Publication type:

Article

Decomposing protein-DNA binding and recognition using simplified protein models.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10270, doi. 10.1093/nar/gkx627

By:

Etheve, Loïc;
Martin, Juliette;
Lavery, Richard

Publication type:

Article

Polμ tumor variants decrease the efficiency and accuracy of NHEJ.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 10018, doi. 10.1093/nar/gkx625

By:

Sastre-Moreno, Guillermo;
Pryor, John M.;
Díaz-Talavera, Alberto;
Ruiz, José F.;
Ramsden, Dale A.;
Blanco, Luis

Publication type:

Article

Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9947, doi. 10.1093/nar/gkx600

By:

Ruibing Chen;
Yun Liu;
Hao Zhuang;
Baicai Yang;
Kaiwen Hei;
Mingming Xiao;
Chunyu Hou;
Huajun Gao;
Xinran Zhang;
Chenxi Jia;
Lingjun Li;
Yongmei Li;
Ning Zhang

Publication type:

Article

Dual function of Swc5 in SWR remodeling ATPase activation and histone H2A eviction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9931, doi. 10.1093/nar/gkx589

By:

Lu Sun;
Luk, Ed

Publication type:

Article

HMGN1 and 2 remodel core and linker histone tail domains within chromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9917, doi. 10.1093/nar/gkx579

By:

Murphy, Kevin J.;
Cutter, Amber R.;
He Fang;
Postnikov, Yuri V.;
Bustin, Michael;
Hayes, Jeffrey J.

Publication type:

Article

dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9901, doi. 10.1093/nar/gkx578

By:

O'Geen, Henriette;
Chonghua Ren;
Nicolet, Charles M.;
Perez, Andrew A.;
Halmai, Julian;
Le, Victoria M.;
Mackay, Joel P.;
Farnham, Peggy J.;
Segal, David J.

Publication type:

Article

p53 regulates enhancer accessibility and activity in response to DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9889, doi. 10.1093/nar/gkx577

By:

Younger, Scott T.;
Rinn, John L.

Publication type:

Article

LMO2 is required for TAL1 DNA binding activity and initiation of definitive haematopoiesis at the haemangioblast stage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 17, p. 9874, doi. 10.1093/nar/gkx573

By:

Stanulović, Vesna S.;
Cauchy, Pierre;
Assi, Salam A.;
Hoogenkamp, Maarten

Publication type:

Article