Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 16

Results: 51

Tuning RNA folding and function through rational design of junction topology.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9706, doi. 10.1093/nar/gkx614

By:

Daher, May;
Mustoe, Anthony M.;
Morriss-Andrews, Alex;
Brooks III, Charles L.;
Walter, Nils G.

Publication type:

Article

A novel non-canonical PIP-box mediates PARG interaction with PCNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9741, doi. 10.1093/nar/gkx604

By:

Kaufmann, Tanja;
Grishkovskaya, Irina;
Polyansky, Anton A.;
Kostrhon, Sebastian;
Kukolj, Eva;
Olek, Karin M.;
Herbert, Sebastien;
Beltzung, Etienne;
Mechtler, Karl;
Peterbauer, Thomas;
Gotzmann, Josef;
Zhang, Lijuan;
Hartl, Markus;
Zagrovic, Bojan;
Elsayad, Kareem;
Djinovic-Carugo, Kristina;
Slade, Dea

Publication type:

Article

A synthetic DNA-binding inhibitor of SOX2 guides human induced pluripotent stem cells to differentiate into mesoderm.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9219, doi. 10.1093/nar/gkx693

By:

Junichi Taniguchi;
Pandian, Ganesh N.;
Takuya Hidaka;
Kaori Hashiya;
Toshikazu Bando;
Kyeong Kyu Kim;
Hiroshi Sugiyama

Publication type:

Article

De novo pathway-based biomarker identification.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e151, doi. 10.1093/nar/gkx642

By:

Alcaraz, Nicolas;
List, Markus;
Batra, Richa;
Vandin, Fabio;
Ditzel, Henrik J.;
Baumbach, Jan

Publication type:

Article

SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e150, doi. 10.1093/nar/gkx631

By:

Piątkowski, Paweł;
Jabłońska, Jagoda;
Żyła, Adriana;
Niedziałek, Dorota;
Matelska, Dorota;
Jankowska, Elżbieta;
Waleń, Tomasz;
Dawson, Wayne K.;
Bujnicki, Janusz M.

Publication type:

Article

Detecting gene subnetworks under selection in biological pathways.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e149, doi. 10.1093/nar/gkx626

By:

Gouy, Alexandre;
Daub, Joséphine T.;
Excoffier, Laurent

Publication type:

Article

Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e148, doi. 10.1093/nar/gkx615

By:

Afik, Shaked;
Yates, Kathleen B.;
Bi, Kevin;
Darko, Samuel;
Godec, Jernej;
Gerdemann, Ulrike;
Swadling, Leo;
Douek, Daniel C.;
Klenerman, Paul;
Barnes, Eleanor J.;
Sharpe, Arlene H.;
Haining, W. Nicholas;
Yosef, Nir

Publication type:

Article

Controlled re-activation of epigenetically silenced Tet promoter-driven transgene expression by targeted demethylation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e147, doi. 10.1093/nar/gkx601

By:

Gödecke, Natascha;
Zha, Lisha;
Spencer, Shawal;
Behme, Sara;
Riemer, Pamela;
Rehli, Michael;
Hauser, Hansjörg;
Wirth, Dagmar

Publication type:

Article

Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. e146, doi. 10.1093/nar/gkx591

By:

LeBlanc, Regan M.;
Longhini, Andrew P.;
Le Grice, Stuart F. J.;
Johnson, Bruce A.;
Dayie, Theodore K.

Publication type:

Article

Retraction: Yeast CAF-1 assembles histone (H3-H4) 2 tetramers prior to DNA deposition.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 16, p. 9811, doi. 10.1093/nar/gkx657
Publication type:: Article

Corrigendum: A novel requirement for DROSHA in maintenance of mammalian CG methylation.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 16, p. 9810, doi. 10.1093/nar/gkx736
Publication type:: Article

Corrigendum: CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 16, p. 9809, doi. 10.1093/nar/gkx729
Publication type:: Article

Model-based design of RNA hybridization networks implemented in living cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9797, doi. 10.1093/nar/gkx698

By:

Rodrigo, Guillermo;
Prakash, Satya;
Shen, Shensi;
Majer, Eszter;
Daròs, José-Antonio;
Jaramillo, Alfonso

Publication type:

Article

Blocking the RecA activity and SOS-response in bacteria with a short α-helical peptide.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9788, doi. 10.1093/nar/gkx687

By:

Yakimov, Alexander;
Pobegalov, Georgii;
Bakhlanova, Irina;
Khodorkovskii, Mikhail;
Petukhov, Michael;
Baitin, Dmitry

Publication type:

Article

The fused SnoaL 2 domain in the Mycobacterium tuberculosis sigma factor σJ modulates promoter recognition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9760, doi. 10.1093/nar/gkx609

By:

Goutam, Kapil;
Gupta, Arvind K.;
Gopal, Balasubramanian

Publication type:

Article

In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9716, doi. 10.1093/nar/gkx617

By:

Incarnato, Danny;
Morandi, Edoardo;
Anselmi, Francesca;
Simon, Lisa M.;
Basile, Giulia;
Oliviero, Salvatore

Publication type:

Article

Mechanistic insight into how multidrug resistant Acinetobacter baumannii response regulator AdeR recognizes an intercistronic region.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9773, doi. 10.1093/nar/gkx624

By:

Yurong Wen;
Zhenlin Ouyang;
Yue Yu;
Xiaorong Zhou;
Yingmei Pei;
Devreese, Bart;
Higgins, Paul G.;
Fang Zheng

Publication type:

Article

Crystal structure of an engineered, HIV-specific recombinase for removal of integrated proviral DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9726, doi. 10.1093/nar/gkx603

By:

Meinke, Gretchen;
Karpinski, Janet;
Buchholz, Frank;
Bohm, Andrew

Publication type:

Article

A structural map of oncomiR-1 at single-nucleotide resolution.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9694, doi. 10.1093/nar/gkx613

By:

Chakraborty, Saikat;
Krishnan, Yamuna

Publication type:

Article

The conserved AU dinucleotide at the 5' end of nascent U1 snRNA is optimized for the interaction with nuclear cap-binding-complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9679, doi. 10.1093/nar/gkx608

By:

Chung-Shu Yeh;
Shang-Lin Chang;
Jui-Hui Chen;
Hsuan-Kai Wang;
Yue-Chang Chou;
Chun-Hsiung Wang;
Shih-Hsin Huang;
Larson, Amy;
Pleiss, Jeffrey A.;
Wei-Hau Chang;
Tien-Hsien Chang

Publication type:

Article

hnRNP L controls HPV16 RNA polyadenylation and splicing in an Akt kinase-dependent manner.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9654, doi. 10.1093/nar/gkx606

By:

Naoko Kajitani;
Glahder, Jacob;
Chengjun Wu;
Haoran Yu;
Nilsson, Kersti;
Schwartz, Stefan

Publication type:

Article

ALYREF mainly binds to the 5' and the 3' regions of the mRNA in vivo.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9640, doi. 10.1093/nar/gkx597

By:

Min Shi;
Heng Zhang;
Xudong Wu;
Zhisong He;
Lantian Wang;
Shanye Yin;
Bin Tian;
Guohui Li;
Hong Cheng

Publication type:

Article

The important conformational plasticity of DsrA sRNA for adapting multiple target regulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9625, doi. 10.1093/nar/gkx570

By:

Pengzhi Wu;
Xiaodan Liu;
Lingna Yang;
Yitong Sun;
Qingguo Gong;
Jihui Wu;
Yunyu Shi

Publication type:

Article

Activities of gyrase and topoisomerase IV on positively supercoiled DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9611, doi. 10.1093/nar/gkx649

By:

Ashley, Rachel E.;
Dittmore, Andrew;
McPherson, Sylvia A.;
Turnbough Jr., Charles L.;
Neuman, Keir C.;
Osheroff, Neil

Publication type:

Article

Derivatives of Bst-like Gss-polymerase with improved processivity and inhibitor tolerance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9595, doi. 10.1093/nar/gkx645

By:

Oscorbin, Igor P.;
Belousova, Ekaterina A.;
Boyarskikh, Ulyana A.;
Zakabunin, Aleksandr I.;
Khrapov, Evgeny A.;
Filipenko, Maksim L.

Publication type:

Article

UbaLAI is a monomeric Type IIE restriction enzyme.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9583, doi. 10.1093/nar/gkx634

By:

Sasnauskas, Giedrius;
Tamulaitienė, Giedrė;
Tamulaitis, Gintautas;
Čalyševa, Jelena;
Laime, Miglė;
Rimšelienė, Renata;
Lubys, Arvydas;
Siksnys, Virginijus

Publication type:

Article

Co-produced natural ketolides methymycin and pikromycin inhibit bacterial growth by preventing synthesis of a limited number of proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9573, doi. 10.1093/nar/gkx673

By:

Almutairi, Mashal M.;
Svetlov, Maxim S.;
Hansen, Douglas A.;
Khabibullina, Nelli F.;
Klepacki, Dorota;
Han-Young Kang;
Sherman, David H.;
Vázquez-Laslop, Nora;
Polikanov, Yury S.;
Mankin, Alexander S.

Publication type:

Article

Concerted action of two 3' cap-independent translation enhancers increases the competitive strength of translated viral genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9558, doi. 10.1093/nar/gkx643

By:

Zhiyou Du;
Alekhina, Olga M.;
Vassilenko, Konstantin S.;
Simon, Anne E.

Publication type:

Article

Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9547, doi. 10.1093/nar/gkx638

By:

Joris, Marine;
Schloesser, Marie;
Baurain, Denis;
Hanikenne, Marc;
Muller, Marc;
Motte, Patrick

Publication type:

Article

Antisense oligonucleotides targeting translation inhibitory elements in 5' UTRs can selectively increase protein levels.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9528, doi. 10.1093/nar/gkx632

By:

Xue-hai Liang;
Hong Sun;
Wen Shen;
Shiyu Wang;
Joyee Yao;
Migawa, Michael T.;
Huynh-Hoa Bui;
Damle, Sagar S.;
Riney, Stan;
Graham, Mark J.;
Crooke, Rosanne M.;
Crooke, Stanley T.

Publication type:

Article

Regulation of HuR structure and function by dihydrotanshinone-I.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9514, doi. 10.1093/nar/gkx623

By:

Lal, Preet;
Cerofolini, Linda;
D'Agostino, Vito Giuseppe;
Zucal, Chiara;
Fuccio, Carmelo;
Bonomo, Isabelle;
Dassi, Erik;
Giuntini, Stefano;
Di Maio, Danilo;
Vishwakarma, Vikalp;
Preet, Ranjan;
Williams, Sha Neisha;
Fairlamb, Max S.;
Munk, Rachel;
Lehrmann, Elin;
Abdelmohsen, Kotb;
Elezgarai, Saioa R.;
Luchinat, Claudio;
Novellino, Ettore;
Quattrone, Alessandro

Publication type:

Article

Widespread intra-dependencies in the removal of introns from human transcripts.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9503, doi. 10.1093/nar/gkx661

By:

Seong Won Kim;
Taggart, Allison J.;
Heintzelman, Claire;
Cygan, Kamil J.;
Hull, Caitlin G.;
Jing Wang;
Shrestha, Barsha;
Fairbrother, William G.

Publication type:

Article

A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9481, doi. 10.1093/nar/gkx652

By:

Lifang Feng;
Guangying Wang;
Hamilton, Eileen P.;
Jie Xiong;
Guanxiong Yan;
Kai Chen;
Xiao Chen;
Wen Dui;
Plemens, Amber;
Khadr, Lara;
Dhanekula, Arjune;
Mina Juma;
Hung Quang Dang;
Kapler, Geoffrey M.;
Orias, Eduardo;
Wei Miao;
Yifan Liu

Publication type:

Article

Systematic analysis of DNA crosslink repair pathways during development and aging in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9467, doi. 10.1093/nar/gkx660

By:

Wilson, III, David M.;
Rieckher, Matthias;
Williams, Ashley B.;
Schumacher, Björn

Publication type:

Article

STN1-POLA2 interaction provides a basis for primase-pol α stimulation by human STN1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9455, doi. 10.1093/nar/gkx621

By:

Ganduri, Swapna;
Lue, Neal F.

Publication type:

Article

Phosphorylation regulates human polη stability and damage bypass throughout the cell cycle.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9441, doi. 10.1093/nar/gkx619

By:

Bertoletti, Federica;
Cea, Valentina;
Chih-Chao Liang;
Lanati, Taiba;
Maffia, Antonio;
Avarello, Mario D. M.;
Cipolla, Lina;
Lehmann, Alan R.;
Cohn, Martin A.;
Sabbioneda, Simone

Publication type:

Article

Human DNA polymerase delta double-mutant D316A;E318A interferes with DNA mismatch repair in vitro.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9427, doi. 10.1093/nar/gkx611

By:

Dekang Liu;
Frederiksen, Jane H.;
Liberti, Sascha E.;
Lützen, Anne;
Keijzers, Guido;
Pena-Diaz, Javier;
Rasmussen, Lene Juel

Publication type:

Article

Monitoring Replication Protein A (RPA) dynamics in homologous recombination through site-specific incorporation of non-canonical amino acids.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9413, doi. 10.1093/nar/gkx598

By:

Pokhrel, Nilisha;
Origanti, Sofia;
Davenport, Eric Parker;
Gandhi, Disha;
Kaniecki, Kyle;
Mehl, Ryan A.;
Greene, Eric C.;
Dockendorff, Chris;
Antony, Edwin

Publication type:

Article

XIAP upregulates expression of HIF target genes by targeting HIF1α for Lys63-linked polyubiquitination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9336, doi. 10.1093/nar/gkx549

By:

Park, Catherine V.;
Ivanova, Iglika G.;
Kenneth, Niall S.

Publication type:

Article

Cohesin acetyltransferase Esco2 regulates SAC and kinetochore functions via maintaining H4K16 acetylation during mouse oocyte meiosis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9388, doi. 10.1093/nar/gkx563

By:

Yajuan Lu;
Xiaoxin Dai;
Mianqun Zhang;
Yilong Miao;
Changyin Zhou;
Zhaokang Cui;
Bo Xiong

Publication type:

Article

Regulation of chromatin folding by conformational variations of nucleosome linker DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9372, doi. 10.1093/nar/gkx562

By:

Buckwalter, Jenna M.;
Norouzi, Davood;
Harutyunyan, Anna;
Zhurkin, Victor B.;
Grigoryev, Sergei A.

Publication type:

Article

Recruitment and delivery of the fission yeast Rst2 transcription factor via a local genome structure counteracts repression by Tup1-family corepressors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9361, doi. 10.1093/nar/gkx555

By:

Asada, Ryuta;
Miki Umeda;
Akira Adachi;
Satoshi Senmatsu;
Takuya Abe;
Hiroshi Iwasaki;
Kunihiro Ohta;
Hoffman, Charles S.;
Kouji Hirota

Publication type:

Article

Crosstalk between histone modifications indicates that inhibition of arginine methyltransferase CARM1 activity reverses HIV latency.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9348, doi. 10.1093/nar/gkx550

By:

Zheng Zhang;
Nikolai, Bryan C.;
Gates, Leah A.;
Sung Yun Jung;
Siwak, Edward B.;
Bin He;
Rice, Andrew P.;
O'Malley, Bert W.;
Qin Feng

Publication type:

Article

A novel requirement for DROSHA in maintenance of mammalian CG methylation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9398, doi. 10.1093/nar/gkx695

By:

Stathopoulou, Athanasia;
Chhetri, Jyoti B.;
Ambrose, John C.;
Estève, Pierre-Olivier;
Lexiang Ji;
Erdjument-Bromage, Hediye;
Guoqiang Zhang;
Neubert, Thomas A.;
Pradhan, Sriharsa;
Herrero, Javier;
Schmitz, Robert J.;
Ooi, Steen K. T.

Publication type:

Article

Identification of multiple roles for histone acetyltransferase 1 in replication-coupled chromatin assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9319, doi. 10.1093/nar/gkx545

By:

Garcia, Paula A. Agudelo;
Hoover, Michael E.;
Pei Zhang;
Nagarajan, Prabakaran;
Freitas, Michael A.;
Parthun, Mark R.

Publication type:

Article

The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9302, doi. 10.1093/nar/gkx529

By:

Gómez-Herreros, Fernando;
Margaritis, Thanasis;
Rodríguez-Galán, Olga;
Pelechano, Vicent;
Begley, Victoria;
Millán-Zambrano, Gonzalo;
Morillo-Huesca, Macarena;
Muñoz-Centeno, Mari Cruz;
Pérez-Ortín, José E.;
de la Cruz, Jesús;
Holstege, Frank C. P.;
Chávez, Sebastián

Publication type:

Article

A comprehensive, cell specific microRNA catalogue of human peripheral blood.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9290, doi. 10.1093/nar/gkx706

By:

Juzenas, Simonas;
Venkatesh, Geetha;
Hübenthal, Matthias;
Hoeppner, Marc P.;
Gracie Du, Zhipei;
Paulsen, Maren;
Rosenstiel, Philip;
Senger, Philipp;
Hofmann-Apitius, Martin;
Keller, Andreas;
Kupcinskas, Limas;
Franke, Andre;
Hemmrich-Stanisak, Georg

Publication type:

Article

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9272, doi. 10.1093/nar/gkx696

By:

Tvardovskiy, Andrey;
Schwämmle, Veit;
Kempf, Stefan J.;
Rogowska-Wrzesinska, Adelina;
Jensen, Ole N.

Publication type:

Article

CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9260, doi. 10.1093/nar/gkx646

By:

Zijun Zhang;
Yi Xing

Publication type:

Article

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 16, p. 9244, doi. 10.1093/nar/gkx618

By:

Pancaldi, Vera;
Martin-Subero, Ignacio;
Were, Felipe;
Carrillo-de-Santa-Pau, Enrique;
Juan, David;
Rico, Daniel;
Valencia, Alfonso

Publication type:

Article