Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 15

Results: 50

mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8661, doi. 10.1093/nar/gkx569

By:

Rydzik, Anna M.;
Warminski, Marcin;
Sikorski, Pawel J.;
Baranowski, Marek R.;
Walczak, Sylwia;
Kowalska, Joanna;
Zuberek, Joanna;
Lukaszewicz, Maciej;
Nowak, Elzbieta;
Claridge, Timothy D. W.;
Darzynkiewicz, Edward;
Nowotny, Marcin;
Jemielity, Jacek

Publication type:

Article

The third restriction-modification system from Thermus aquaticus YT-1: solving the riddle of two TaqII specificities.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9005, doi. 10.1093/nar/gkx599

By:

Skowron, Piotr M.;
Anton, Brian P.;
Czajkowska, Edyta;
Zebrowska, Joanna;
Sulecka, Ewa;
Krefft, Daria;
Jezewska-Frackowiak, Joanna;
Zolnierkiewicz, Olga;
Witkowska, Malgorzata;
Morgan, Richard D.;
Wilson, Geoffrey G.;
Fomenkov, Alexey;
Roberts, Richard J.;
Zylicz-Stachula, Agnieszka

Publication type:

Article

Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx594

By:

Welch, Rene;
Dongjun Chung;
Grass, Jeffrey;
Landick, Robert;
Keleş, Sündüz

Publication type:

Article

Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx588

By:

Androvic, Peter;
Valihrach, Lukas;
Elling, Julie;
Sjoback, Robert;
Kubista, Mikael

Publication type:

Article

Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx585

By:

Yue Deng;
Feng Bao;
Yang Yang;
Xiangyang Ji;
Mulong Du;
Zhengdong Zhang;
Meilin Wang;
Qionghai Dai

Publication type:

Article

A massively parallel strategy for STR marker development, capture, and genotyping.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx574

By:

Kistler, Logan;
Johnson, Stephen M.;
Irwin, Mitchell T.;
Louis, Edward E.;
Ratan, Aakrosh;
Perry, George H.

Publication type:

Article

mRNA detection in budding yeast with single fluorophores.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx568

By:

Wadsworth, Gable M.;
Parikh, Rasesh Y.;
Choy, John S.;
Kim, Harold D.

Publication type:

Article

Understanding mutational effects in digenic diseases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx557

By:

Gazzo, Andrea;
Raimondi, Daniele;
Daneels, Dorien;
Moreau, Yves;
Smits, Guillaume;
Van Dooren, Sonia;
Lenaerts, Tom

Publication type:

Article

Highly efficient preparation of single-stranded DNA rings by T4 ligase at abnormally low Mg(II) concentration.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx553

By:

Ran An;
Qi Li;
Yiqiao Fan;
Jing Li;
Xiaoming Pan;
Makoto Komiyama;
Xingguo Liang

Publication type:

Article

EC-tagging allows cell type-specific RNA analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx551

By:

Naoki Hida;
Aboukilila, Mohamed Y.;
Burow, Dana A.;
Paul, Rakesh;
Greenberg, Marc M.;
Fazio, Michael;
Beasley, Samantha;
Spitale, Robert C.;
Cleary, Michael D.

Publication type:

Article

A systematic comparison of error correction enzymes by next-generation sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9206, doi. 10.1093/nar/gkx691

By:

Lubock, Nathan B.;
Di Zhang;
Sidore, Angus M.;
Church, George M.;
Kosuri, Sriram

Publication type:

Article

PhiReX: a programmable and red light-regulated protein expression switch for yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9193, doi. 10.1093/nar/gkx610

By:

Hochrein, Lena;
Machens, Fabian;
Messerschmidt, Katrin;
Mueller-Roeber, Bernd

Publication type:

Article

Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9178, doi. 10.1093/nar/gkx592

By:

Nußbaumer, Felix;
Juen, Michael Andreas;
Gasser, Catherina;
Kremser, Johannes;
Müller, Thomas;
Tollinger, Martin;
Kreutz, Christoph

Publication type:

Article

CpG and methylation-dependent DNA binding and dynamics of the methylcytosine binding domain 2 protein at the single-molecule level.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9164, doi. 10.1093/nar/gkx548

By:

Hai Pan;
Bilinovich, Stephanie M.;
Kaur, Parminder;
Riehn, Robert;
Hong Wang;
Williams Jr, David C.

Publication type:

Article

Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9149, doi. 10.1093/nar/gkx547

By:

Gang Sheng;
Gogakos, Tasos;
Jiuyu Wang;
Hongtu Zhao;
Serganov, Artem;
Juranek, Stefan;
Tuschl, Thomas;
Patel, Dinshaw J.;
Yanli Wang

Publication type:

Article

Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9138, doi. 10.1093/nar/gkx527

By:

Moon, Andrea F.;
Pryor, John M.;
Ramsden, Dale A.;
Kunkel, Thomas A.;
Bebenek, Katarzyna;
Pedersen, Lars C.

Publication type:

Article

Human ribosomal protein eS1 is engaged in cellular events related to processing and functioning of U11 snRNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9121, doi. 10.1093/nar/gkx559

By:

Gopanenko, Alexander V.;
Malygin, Alexey A.;
Tupikin, Alexey E.;
Laktionov, Pavel P.;
Kabilov, Marsel R.;
Karpova, Galina G.

Publication type:

Article

The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9108, doi. 10.1093/nar/gkx537

By:

Shozo Honda;
Takuya Kawamura;
Loher, Phillipe;
Keisuke Morichika;
Rigoutsos, Isidore;
Yohei Kirino

Publication type:

Article

ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9093, doi. 10.1093/nar/gkx536

By:

Brown, Kristen C.;
Svendsen, Joshua M.;
Tucci, Rachel M.;
Montgomery, Brooke E.;
Montgomery, Taiowa A.

Publication type:

Article

A mechanism for a single nucleotide intron shift.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9085, doi. 10.1093/nar/gkx520

By:

Fekete, Erzsébet;
Flipphi, Michel;
Ág, Norbert;
Kavalecz, Napsugár;
Cerqueira, Gustavo;
Karaffa, Levente

Publication type:

Article

Polypyrimidine tract-binding protein (PTB) and PTB-associated splicing factor in CVB3 infection: an ITAF for an ITAF.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9068, doi. 10.1093/nar/gkx519

By:

Dave, Pratik;
George, Biju;
Sharma, Divya Khandige;
Das, Saumitra

Publication type:

Article

Position-dependent effects of regioisomeric methylated adenine and guanine ribonucleosides on translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9059, doi. 10.1093/nar/gkx515

By:

Changjun You;
Xiaoxia Dai;
Yinsheng Wang

Publication type:

Article

Engineering human PrimPol into an efficient RNA-dependent-DNA primase/polymerase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9046, doi. 10.1093/nar/gkx633

By:

Agudo, Rubén;
Calvo, Patricia A.;
Martínez-Jiménez, María I.;
Blanco, Luis

Publication type:

Article

Structure-based domain assignment in Leishmania infantum EndoG: characterization of a pH-dependent regulatory switch and a C-terminal extension that largely dictates DNA substrate preferences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9030, doi. 10.1093/nar/gkx629

By:

Oliva, Cristina;
Sánchez-Murcia, Pedro A.;
Rico, Eva;
Bravo, Ana;
Menéndez, Margarita;
Gago, Federico;
Jiménez-Ruiz1, Antonio

Publication type:

Article

Mechanistic features of the atypical tRNA m¹G9 SPOUT methyltransferase, Trm10.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 9019, doi. 10.1093/nar/gkx620

By:

Krishnamohan, Aiswarya;
Jackman, Jane E.

Publication type:

Article

The IRES5'UTR of the dicistrovirus cricket paralysis virus is a type III IRES containing an essential pseudoknot structure.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8993, doi. 10.1093/nar/gkx622

By:

Gross, Lauriane;
Vicens, Quentin;
Einhorn, Evelyne;
Noireterre, Audrey;
Schaeffer, Laure;
Kuhn, Lauriane;
Imler, Jean-Luc;
Eriani, Gilbert;
Meignin, Carine;
Martin, Franck

Publication type:

Article

Strand-specific CpG hemimethylation, a novel epigenetic modification functional for genomic imprinting.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8822, doi. 10.1093/nar/gkx518

By:

Patiño-Parrado, Iris;
Gómez-Jiménez, Álvaro;
López-Sánchez, Noelia;
Frade, José M.

Publication type:

Article

Coupling transcriptional activation of CRISPR-Cas system and DNA repair genes by Csa3a in Sulfolobus islandicus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8978, doi. 10.1093/nar/gkx612

By:

Tao Liu;
Zhenzhen Liu;
Qing Ye;
Saifu Pan;
Xiaodi Wang;
Yingjun Li;
Wenfang Peng;
Yunxiang Liang;
Qunxin She;
Nan Peng

Publication type:

Article

Genome-wide analysis of influenza viral RNA and nucleoprotein association.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8968, doi. 10.1093/nar/gkx584

By:

Lee, Nara;
Le Sage, Valerie;
Nanni, Adalena V.;
Snyder, Dan J.;
Cooper, Vaughn S.;
Lakdawala, Seema S.

Publication type:

Article

The SmAP2 RNA binding motif in the 3'UTR affects mRNA stability in the crenarchaeum Sulfolobus solfataricus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8957, doi. 10.1093/nar/gkx581

By:

Mártens, Birgit;
Sharma, Kundan;
Urlaub, Henning;
Blási, Udo

Publication type:

Article

Integrative and conjugative elements and their hosts: composition, distribution and organization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8943, doi. 10.1093/nar/gkx607

By:

Cury, Jean;
Touchon, Marie;
Rocha, Eduardo P. C.

Publication type:

Article

Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8930, doi. 10.1093/nar/gkx560

By:

Weimin Li;
Wencheng Li;
Laishram, Rakesh S.;
Hoque, Mainul;
Zhe Ji;
Bin Tian;
Anderson, Richard A.

Publication type:

Article

A novel nucleoid-associated protein coordinates chromosome replication and chromosome partition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8916, doi. 10.1093/nar/gkx596

By:

Taylor, James A.;
Panis, Gaël;
Viollier, Patrick H.;
Marczynski, Gregory T.

Publication type:

Article

Unencumbered Pol β lyase activity in nucleosome core particles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8901, doi. 10.1093/nar/gkx593

By:

Rodriguez, Yesenia;
Howard, Michael J.;
Cuneo, Matthew J.;
Prasad, Rajendra;
Wilson, Samuel H.

Publication type:

Article

A phosphorylation-and-ubiquitylation circuitry driving ATR activation and homologous recombination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8859, doi. 10.1093/nar/gkx571

By:

Dubois, Jean-Christophe;
Yates, Maïlyn;
Gaudreau-Lapierre, Antoine;
Clément, Geneviève;
Cappadocia, Laurent;
Gaudreau, Luc;
Lee Zou;
Maréchal, Alexandre

Publication type:

Article

FANCJ helicase controls the balance between shortand long-tract gene conversions between sister chromatids.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8886, doi. 10.1093/nar/gkx586

By:

Nath, Sarmi;
Somyajit, Kumar;
Mishra, Anup;
Scully, Ralph;
Nagaraju, Ganesh

Publication type:

Article

Bacillus subtilis RecA with DprA-SsbA antagonizes RecX function during natural transformation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8873, doi. 10.1093/nar/gkx583

By:

Shimin Le;
Serrano, Ester;
Ryo Kawamura;
Carrasco, Begoña;
Jie Yan;
Alonso, Juan C.

Publication type:

Article

MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8712, doi. 10.1093/nar/gkx590

By:

Bentham, Robert B.;
Bryson, Kevin;
Szabadkai, Gyorgy

Publication type:

Article

Mediator binds to boundaries of chromosomal interaction domains and to proteins involved in DNA looping, RNA metabolism, chromatin remodeling, and actin assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8806, doi. 10.1093/nar/gkx491

By:

Chereji, Răzvan V.;
Bharatula, Vasudha;
Elfving, Nils;
Blomberg, Jeanette;
Larsson, Miriam;
Morozov, Alexandre V.;
Broach, James R.;
Björklund, Stefan

Publication type:

Article

Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8844, doi. 10.1093/nar/gkx528

By:

Noriya Hayashi;
Shun Sasaki;
Hiro Takahashi;
Yui Yamashita;
Satoshi Naito;
Hitoshi Onouchi

Publication type:

Article

Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8835, doi. 10.1093/nar/gkx523

By:

Da Shi;
Svetlov, Dmitri;
Abagyan, Ruben;
Artsimovitch, Irina

Publication type:

Article

MyoD- and FoxO3-mediated hotspot interaction orchestrates super-enhancer activity during myogenic differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8785, doi. 10.1093/nar/gkx488

By:

Peng, Xianlu L.;
So, Karl K.;
Liangqiang He;
Yu Zhao;
Jiajian Zhou;
Yuying Li;
Mingze Yao;
Bo Xu;
Suyang Zhang;
Hongjie Yao;
Ping Hu;
Hao Sun;
Wang, Huating

Publication type:

Article

Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8745, doi. 10.1093/nar/gkx605

By:

Davis, Jason A.;
Saunders, Sita J.;
Mann, Martin;
Backofen, Rolf

Publication type:

Article

Regulatory dynamics of 11p13 suggest a role for EHF in modifying CF lung disease severity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8773, doi. 10.1093/nar/gkx482

By:

Stolzenburg, Lindsay R.;
Rui Yang;
Kerschner, Jenny L.;
Fossum, Sara;
Xu, Matthew;
Hoffmann, Andrew;
Lamar, Kay-Marie;
Ghosh, Sujana;
Wachtel, Sarah;
Leir, Shih-Hsing;
Harris, Ann

Publication type:

Article

Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8758, doi. 10.1093/nar/gkx475

By:

Yuichiro Semba;
Akihito Harada;
Kazumitsu Maehara;
Shinya Oki;
Chikara Meno;
Jun Ueda;
Kazuo Yamagata;
Atsushi Suzuki;
Mitsuho Onimaru;
Jumpei Nogami;
Seiji Okada;
Koichi Akashi;
Yasuyuki Ohkawa

Publication type:

Article

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8731, doi. 10.1093/nar/gkx595

By:

Fehlmann, Tobias;
Backes, Christina;
Kahraman, Mustafa;
Haas, Jan;
Ludwig, Nicole;
Posch, Andreas E.;
Würstle, Maximilian L.;
Hübenthal, Matthias;
Franke, Andre;
Meder, Benjamin;
Meese, Eckart;
Keller, Andreas

Publication type:

Article

Prediction of genome-wide DNA methylation in repetitive elements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8697, doi. 10.1093/nar/gkx587

By:

Yinan Zheng;
Joyce, Brian T.;
Lei Liu;
Zhou Zhang;
Kibbe, Warren A.;
Wei Zhang;
Lifang Hou

Publication type:

Article

Multimerization rules for G-quadruplexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8684, doi. 10.1093/nar/gkx637

By:

Kolesnikova, Sofia;
Hubálek, Martin;
Bednárová, Lucie;
Cvačka, Josef;
Curtis, Edward A.

Publication type:

Article

Selective tumor cell death induced by irradiated riboflavin through recognizing DNA G-T mismatch.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8676, doi. 10.1093/nar/gkx602

By:

Yi Yuan;
Yongyun Zhao;
Lianqi Chen;
Jiasi Wu;
Gangyi Chen;
Sheng Li;
Jiawei Zou;
Rong Chen;
Jian Wang;
Fan Jiang;
Zhuo Tang

Publication type:

Article

A snoRNA modulates mRNA 3' end processing and regulates the expression of a subset of mRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 15, p. 8647, doi. 10.1093/nar/gkx651

By:

Chunliu Huang;
Junjie Shi;
Yibin Guo;
Weijun Huang;
Shanshan Huang;
Siqi Ming;
Xingui Wu;
Rui Zhang;
Junjun Ding;
Wei Zhao;
Jie Jia;
Xi Huang;
Peng Xiang, Andy;
Yongsheng Shi;
Chengguo Yao

Publication type:

Article