Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 14

Results: 52

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 14, p. 8646, doi. 10.1093/nar/gkx636
Publication type:: Article

ATP hydrolysis provides functions that promote rejection of pairings between different copies of long repeated sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8448, doi. 10.1093/nar/gkx582

By:

Danilowicz, Claudia;
Hermans, Laura;
Coljee, Vincent;
Prévost, Chantal;
Prentiss, Mara

Publication type:

Article

CgII cleaves DNA using a mechanism distinct from other ATP-dependent restriction endonucleases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8435, doi. 10.1093/nar/gkx580

By:

Toliusis, Paulius;
Zaremba, Mindaugas;
Silanskas, Arunas;
Szczelkun, Mark D.;
Siksnys, Virginijus

Publication type:

Article

Restriction endonuclease triggered bacterial apoptosis as a mechanism for long time survival.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8423, doi. 10.1093/nar/gkx576

By:

Nagamalleswari, Easa;
Rao, Sandhya;
Vasu, Kommireddy;
Nagaraja, Valakunja

Publication type:

Article

Comparative analysis of chimeric ZFP-, TALE- and Cas9-piggyBac transposases for integration into a single locus in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8411, doi. 10.1093/nar/gkx572

By:

Wentian Luo;
Galvan, Daniel L.;
Woodard, Lauren E.;
Dorset, Dan;
Levy, Shawn;
Wilson, Matthew H.

Publication type:

Article

Control of serine integrase recombination directionality by fusion with the directionality factor.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8635, doi. 10.1093/nar/gkx567

By:

Olorunniji, Femi J.;
McPherson, Arlene L.;
Rosser, Susan J.;
Smith, Margaret C. M.;
Colloms, Sean D.;
Stark, W. Marshall

Publication type:

Article

Monomolecular G-quadruplex structures with inversion of polarity sites: new topologies and potentiality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8156, doi. 10.1093/nar/gkx566

By:

Virgilio, Antonella;
Russo, Annapina;
Amato, Teresa;
Russo, Giulia;
Mayo, Luciano;
Esposito, Veronica;
Galeone, Aldo

Publication type:

Article

The role of poly ADP-ribosylation in the first wave of DNA damage response.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8129, doi. 10.1093/nar/gkx565

By:

Chao Liu;
Vyas, Aditi;
Kassab, Muzaffer A.;
Singh, Anup K.;
Xiaochun Yu

Publication type:

Article

BRD4 inhibitors block telomere elongation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8403, doi. 10.1093/nar/gkx561

By:

Wang, Steven;
Pike, Alexandra M.;
Lee, Stella S.;
Strong, Margaret A.;
Connelly, Carla J.;
Greider, Carol W.

Publication type:

Article

Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8142, doi. 10.1093/nar/gkx558

By:

Mutisya, Daniel;
Hardcastle, Travis;
Cheruiyot, Samwel K.;
Pallan, Pradeep S.;
Kennedy, Scott D.;
Egli, Martin;
Kelley, Melissa L.;
van Brabant Smith, Anja;
Rozners, Eriks

Publication type:

Article

Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8190, doi. 10.1093/nar/gkx556

By:

Qing Zhang;
Bassetti, Federico;
Gherardi, Marco;
Lagomarsino, Marco Cosentino

Publication type:

Article

Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8369, doi. 10.1093/nar/gkx554

By:

Sharma, Virag;
Hiller, Michael

Publication type:

Article

Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8180, doi. 10.1093/nar/gkx552

By:

Chengzhe Tian;
Semsey, Szabolcs;
Mitarai, Namiko

Publication type:

Article

Crystallographic analyses illustrate significant plasticity and efficient recoding of meganuclease target specificity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8621, doi. 10.1093/nar/gkx544

By:

Werther, Rachel;
Hallinan, Jazmine P.;
Lambert, Abigail R.;
Havens, Kyle;
Pogson, Mark;
Jarjour, Jordan;
Galizi, Roberto;
Windbichler, Nikolai;
Crisanti, Andrea;
Nolan, Tony;
Stoddard, Barry L.

Publication type:

Article

The identification of FANCD2 DNA binding domains reveals nuclear localization sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8341, doi. 10.1093/nar/gkx543

By:

Niraj, Joshi;
Caron, Marie-Christine;
Drapeau, Karine;
Bérubé, Stéphanie;
Guitton-Sert, Laure;
Coulombe, Yan;
Couturier, Anthony M.;
Masson, Jean-Yves

Publication type:

Article

Digital direct detection of microRNAs using single molecule arrays.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx542

By:

Cohen, Limor;
Hartman, Mark R.;
Amardey-Wellington, Aaron;
Walt, David R.

Publication type:

Article

Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8167, doi. 10.1093/nar/gkx540

By:

Pressman, Abe;
Moretti, Janina E.;
Campbell, Gregory W.;
Müller, Ulrich F.;
Chen, Irene A.

Publication type:

Article

Resolving sugar puckers in RNA excited states exposes slow modes of repuckering dynamics.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx525

By:

Clay, Mary C.;
Ganser, Laura R.;
Merriman, Dawn K.;
Al-Hashimi, Hashim M.

Publication type:

Article

CompAnnotate: a comparative approach to annotate base-pairing interactions in RNA 3D structures.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx538

By:

Islam, Shahidul;
Ping Ge;
Shaojie Zhang

Publication type:

Article

Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx533

By:

Ritchey, Laura E.;
Zhao Su;
Yin Tang;
Tack, David C.;
Assmann, Sarah M.;
Bevilacqua, Philip C.

Publication type:

Article

Amino acid substrates impose polyamine, eIF5A, or hypusine requirement for peptide synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8392, doi. 10.1093/nar/gkx532

By:

Byung-Sik Shin;
Takayuki Katoh;
Gutierrez, Erik;
Joo-Ran Kim;
Hiroaki Suga;
Dever, Thomas E.

Publication type:

Article

A data-driven structural model of hSSB1 (NABP2/OBFC2B) self-oligomerization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8609, doi. 10.1093/nar/gkx526

By:

Touma, Christine;
Adams, Mark N.;
Ashton, Nicholas W.;
Mizzi, Michael;
El-Kamand, Serene;
Richard, Derek J.;
Cubeddu, Liza;
Gamsjaeger, Roland

Publication type:

Article

Characterization of a coupled DNA replication and translesion synthesis polymerase supraholoenzyme from archaea.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8329, doi. 10.1093/nar/gkx539

By:

Cranford, Matthew T.;
Chu, Aurea M.;
Baguley, Joshua K.;
Bauer, Robert J.;
Trakselis, Michael A.

Publication type:

Article

Retrotransposons are specified as DNA replication origins in the gene-poor regions of Arabidopsis heterochromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8358, doi. 10.1093/nar/gkx524

By:

Vergara, Zaida;
Sequeira-Mendes, Joana;
Morata, Jordi;
Peiró, Ramón;
Hénaff, Elizabeth;
Costas, Celina;
Casacuberta, Josep M.;
Gutierrez, Crisanto

Publication type:

Article

Functional and structural analysis of AT-specific minor groove binders that disrupt DNA-protein interactions and cause disintegration of the Trypanosoma brucei kinetoplast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8378, doi. 10.1093/nar/gkx521

By:

Millan, Cinthia R.;
Acosta-Reyes, Francisco J.;
Lagartera, Laura;
Ebiloma, Godwin U.;
Lemgruber, Leandro;
Martínez, J. Jonathan Nué;
Saperas, Núria;
Dardonville, Christophe;
de Koning, Harry P.;
Campos, J. Lourdes

Publication type:

Article

Determination of tRNA aminoacylation levels by high-throughput sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx514

By:

Evans, Molly E.;
Clark, Wesley C.;
Guanqun Zheng;
Tao Pan

Publication type:

Article

Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8541, doi. 10.1093/nar/gkx512

By:

Ward, Max;
Datta, Amitava;
Wise, Michael;
Mathews, David H.

Publication type:

Article

COSINE: non-seeding method for mapping long noisy sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx511

By:

Afshar, Pegah Tootoonchi;
Wing Hung Wong

Publication type:

Article

Tethering not required: the glucocorticoid receptor binds directly to activator protein-1 recognition motifs to repress inflammatory genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8596, doi. 10.1093/nar/gkx509

By:

Weikum, Emily R.;
de Vera, Ian Mitchelle S.;
Nwachukwu, Jerome C.;
Hudson, William H.;
Nettles, Kendall W.;
Kojetin, Douglas J.;
Ortlund, Eric A.

Publication type:

Article

Autoregulation of RBM10 and cross-regulation of RBM10/RBM5 via alternative splicing-coupled nonsense-mediated decay.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8524, doi. 10.1093/nar/gkx508

By:

Yue Sun;
Yufang Bao;
Wenjian Han;
Fan Song;
Xianfeng Shen;
Jiawei Zhao;
Ji Zuo;
Saffen, David;
Wei Chen;
Zefeng Wang;
Xintian You;
Yongbo Wang

Publication type:

Article

Alternative splicing of CNOT7 diversifies CCR4-NOT functions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8508, doi. 10.1093/nar/gkx506

By:

Chapat, Clément;
Chettab, Kamel;
Simonet, Pierre;
Peng Wang;
De La Grange, Pierre;
Le Romancer, Muriel;
Corbo, Laura

Publication type:

Article

Prioritizing tests of epistasis through hierarchical representation of genomic redundancies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx505

By:

Cowman, Tyler;
Koyutürk, Mehmet

Publication type:

Article

FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx504

By:

Kun Huang;
Doyle, Francis;
Wurz, Zachary E.;
Tenenbaum, Scott A.;
Hammond, Reza K.;
Caplan, Jeffrey L.;
Meyers, Blake C.

Publication type:

Article

Telomere shortening triggers a feedback loop to enhance end protection.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8314, doi. 10.1093/nar/gkx503

By:

Chia-Wei Yang;
Shun-Fu Tseng;
Chia-Jung Yu;
Chia-Yu Chung;
Cheng-Yen Chang;
Pobiega, Sabrina;
Shu-Chun Teng

Publication type:

Article

Visualization of conformational variability in the domains of long single-stranded RNA molecules.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8493, doi. 10.1093/nar/gkx502

By:

Gilmore, Jamie L.;
Aiko Yoshida;
Hejna, James A.;
Kunio Takeyasu

Publication type:

Article

Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8484, doi. 10.1093/nar/gkx501

By:

Fangzhou Zhao;
Chien-hung Yu;
Yi Liu

Publication type:

Article

An in vivo genetic screen for genes involved in spliced leader trans-splicing indicates a crucial role for continuous de novo spliced leader RNP assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8474, doi. 10.1093/nar/gkx500

By:

Philippe, Lucas;
Pandarakalam, George C.;
Fasimoye, Rotimi;
Harrison, Neale;
Connolly, Bernadette;
Pettitt, Jonathan;
Müller, Berndt

Publication type:

Article

Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8581, doi. 10.1093/nar/gkx499

By:

Ahmed, Tofayel;
Jian Shi;
Bhushan, Shashi

Publication type:

Article

Bacillus subtilis DNA polymerases, PolC and DnaE, are required for both leading and lagging strand synthesis in SPP1 origin-dependent DNA replication.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8302, doi. 10.1093/nar/gkx493

By:

Seco, Elena M.;
Ayora, Silvia

Publication type:

Article

A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx492

By:

Shuya Li;
Fanghong Dong;
Yuexin Wu;
Sai Zhang;
Chen Zhang;
Xiao Liu;
Tao Jiang;
Jianyang Zeng

Publication type:

Article

Functional details of the Mycobacterium tuberculosis VapBC26 toxin-antitoxin system based on a structural study: insights into unique binding and antibiotic peptides.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8564, doi. 10.1093/nar/gkx489

By:

Sung-Min Kang;
Do-Hee Kim;
Ki-Young Lee;
Sung Jean Park;
Hye-Jin Yoon;
Sang Jae Lee;
Hookang Im;
Bong-Jin Lee

Publication type:

Article

The double-stranded RNA binding protein RDE-4 can act cell autonomously during feeding RNAi in C. elegans.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8463, doi. 10.1093/nar/gkx484

By:

Raman, Pravrutha;
Zaghab, Soriayah M.;
Traver, Edward C.;
Jose, Antony M.

Publication type:

Article

DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8551, doi. 10.1093/nar/gkx481

By:

Chiliveri, Sai Chaitanya;
Aute, Ramdas;
Rai, Upasana;
Deshmukh, Mandar V.

Publication type:

Article

Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8291, doi. 10.1093/nar/gkx476

By:

Bjørås, Karine Ø.;
Sousa, Mirta M. L.;
Sharma, Animesh;
Fonseca, Davi M.;
Søgaard, Caroline K.;
Bjørås, Magnar;
Otterlei, Marit

Publication type:

Article

Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 1, doi. 10.1093/nar/gkx471

By:

Credle, Joel J.;
Itoh, Christopher Y.;
Yuan, Tiezheng;
Sharma, Rajni;
Scott, Erick R.;
Workman, Rachael E.;
Yunfan Fan;
Housseau, Franck;
Llosa, Nicolas J.;
Bell, W. Robert.;
Miller, Heather;
Zhang, Sean X.;
Timp, Winston;
Larman, H. Benjamin

Publication type:

Article

Bacterial RNA polymerase caps RNA with various cofactors and cell wall precursors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8282, doi. 10.1093/nar/gkx452

By:

Julius, Christina;
Yuzenkova, Yulia

Publication type:

Article

A novel isoform of TET1 that lacks a CXXC domain is overexpressed in cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8269, doi. 10.1093/nar/gkx435

By:

Good, Charly R.;
Madzo, Jozef;
Patel, Bela;
Maegawa, Shinji;
Engel, Nora;
Jelinek, Jaroslav;
Issa, Jean-Pierre J.

Publication type:

Article

LDB1-mediated enhancer looping can be established independent of mediator and cohesin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8255, doi. 10.1093/nar/gkx433

By:

Krivega, Ivan;
Dean, Ann

Publication type:

Article

Methylation of human eukaryotic elongation factor alpha (eEF1A) by a member of a novel protein lysine methyltransferase family modulates mRNA translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8239, doi. 10.1093/nar/gkx432

By:

Jakobsson, Magnus E.;
Małecki, Jędrzej;
Nilges, Benedikt S.;
Moen, Anders;
Leidel, Sebastian A.;
Falnes, Pål Ø.

Publication type:

Article

H2B ubiquitylation and the histone chaperone Asf1 cooperatively mediate the formation and maintenance of heterochromatin silencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 14, p. 8225, doi. 10.1093/nar/gkx422

By:

Meng-Ying Wu;
Chia-Yeh Lin;
Hsin-Yi Tseng;
Fei-Man Hsu;
Pao-Yang Chen;
Cheng-Fu Kao

Publication type:

Article