Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 11

Results: 70

The haploinsufficient tumor suppressor, CUX1, acts as an analog transcriptional regulator that controls target genes through distal enhancers that loop to target promoters.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6350, doi. 10.1093/nar/gkx218

By:

Arthur, Robert K.;
Ningfei An;
Khan, Saira;
McNerney, Megan E.

Publication type:

Article

Structural basis for substrate binding and catalytic mechanism of a human RNA:m5C methyltransferase NSun6.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6684, doi. 10.1093/nar/gkx473

By:

Ru-Juan Liu;
Tao Long;
Jing Li;
Hao Li;
En-Duo Wang

Publication type:

Article

Mechanism of bacterial gene rearrangement: SprA-catalyzed precise DNA recombination and its directionality control by SprB ensure the gene rearrangement and stable expression of spsM during sporulation in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6669, doi. 10.1093/nar/gkx466

By:

Kimihiro Abe;
Takuo Takamatsu;
Tsutomu Sato

Publication type:

Article

Mass spectrometry for serine ADP-ribosylation? Think o-glycosylation!

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6259, doi. 10.1093/nar/gkx446

By:

Bonfiglio, Juan J.;
Colby, Thomas;
Matic, Ivan

Publication type:

Article

Reconstitution of a functional 7SK snRNP.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6864, doi. 10.1093/nar/gkx262

By:

Brogie, John E.;
Price, David H.

Publication type:

Article

BRG1 interacts with SOX10 to establish the melanocyte lineage and to promote differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6442, doi. 10.1093/nar/gkx259

By:

Marathe, Himangi G.;
Watkins-Chow, Dawn E.;
Weider, Matthias;
Hoffmann, Alana;
Mehta, Gaurav;
Trivedi, Archit;
Aras, Shweta;
Basuroy, Tupa;
Mehrotra, Aanchal;
Bennett, Dorothy C.;
Wegner, Michael;
Pavan, William J.;
de la Serna, Ivana L.

Publication type:

Article

Krüppel-like factors compete for promoters and enhancers to fine-tune transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6572, doi. 10.1093/nar/gkx441

By:

Ilsley, Melissa D.;
Gillinder, Kevin R.;
Magor, Graham W.;
Huang, Stephen;
Bailey, Timothy L.;
Crossley, Merlin;
Perkins, Andrew C.

Publication type:

Article

Translation initiation events on structured eukaryotic mRNAs generate gene expression noise.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6981, doi. 10.1093/nar/gkx430

By:

Dacheux, Estelle;
Malys, Naglis;
Xiang Meng;
Ramachandran, Vinoy;
Mendes, Pedro;
McCarthy, John E. G.

Publication type:

Article

Nonsense-mediated mRNA decay in Tetrahymena is EJC independent and requires a protozoa-specific nuclease.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6848, doi. 10.1093/nar/gkx256

By:

Miao Tian;
Wentao Yang;
Jing Zhang;
Huai Dang;
Xingyi Lu;
Chengjie Fu;
Wei Miao

Publication type:

Article

The DEAD-box helicase Mss116 plays distinct roles in mitochondrial ribogenesis and mRNA-specific translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6628, doi. 10.1093/nar/gkx426

By:

De Silva, Dasmanthie;
Poliquin, Sarah;
Rui Zeng;
Zamudio-Ochoa, Angelica;
Marrero, Natalie;
Perez-Martinez, Xochitl;
Fontanesi, Flavia;
Barrientos, Antoni

Publication type:

Article

Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6837, doi. 10.1093/nar/gkx254

By:

Wu Chen;
Zhensheng Xie;
Fuquan Yang;
Keqiong Ye

Publication type:

Article

Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6613, doi. 10.1093/nar/gkx417

By:

Sun Ho Kim;
Ho Soo Kim;
Sunghwa Bahk;
Jonguk An;
Yeji Yoo;
Jae-Yean Kim;
Woo Sik Chung

Publication type:

Article

Poly(A)-specific ribonuclease is a nuclear ribosome biogenesis factor involved in human 18S rRNA maturation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6822, doi. 10.1093/nar/gkx253

By:

Montellese, Christian;
Montel-Lehry, Nathalie;
Henras, Anthony K.;
Kutay, Ulrike;
Gleizes, Pierre-Emmanuel;
O’Donohue, Marie-Françoise

Publication type:

Article

Large-scale recoding of a bacterial genome by iterative recombineering of synthetic DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6971, doi. 10.1093/nar/gkx415

By:

Yu Heng Lau;
Stirling, Finn;
Kuo, James;
Karrenbelt, Michiel A. P.;
Chan, Yujia A.;
Riesselman, Adam;
Horton, Connor A.;
Schäfer, Elena;
Lips, David;
Weinstock, Matthew T.;
Gibson, Daniel G.;
Way, Jeffrey C.;
Silver, Pamela A.

Publication type:

Article

H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6427, doi. 10.1093/nar/gkx251

By:

Runsheng He;
Kidder, Benjamin L.

Publication type:

Article

Cmr is a redox-responsive regulator of DosR that contributes to M. tuberculosis virulence.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6600, doi. 10.1093/nar/gkx406

By:

Smith, Laura J.;
Bochkareva, Aleksandra;
Rolfe, Matthew D.;
Hunt, Debbie M.;
Kahramanoglou, Christina;
Rodgers, Angela;
Blockley, Alix;
Coade, Stephen;
Lougheed, Kathryn E. A.;
Hafneh, Nor Azian;
Glenn, Sarah M.;
Crack, Jason C.;
Le Brun, Nick E.;
Saldanha, José W.;
Makarov, Vadim;
Nobeli, Irene;
Arnvig, Kristine;
Mukamolova, Galina V.;
Buxton, Roger S.;
Green, Jeffrey

Publication type:

Article

Strong transcription blockage mediated by R-loop formation within a G-rich homopurine–homopyrimidine sequence localized in the vicinity of the promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6589, doi. 10.1093/nar/gkx403

By:

Belotserkovskii, Boris P.;
Jane Hae Soo Shin;
Hanawalt, Philip C.

Publication type:

Article

Ball with hair: modular functionalization of highly stable G-quadruplex DNA nano-scaffolds through N2-guanine modification.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6265, doi. 10.1093/nar/gkx243

By:

Lech, Christopher Jacques;
Phan, Anh Tuân

Publication type:

Article

Interstrand cross-links arising from strand breaks at true abasic sites in duplex DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6275, doi. 10.1093/nar/gkx394

By:

Zhiyu Yang;
Price, Nathan E.;
Johnson, Kevin M.;
Yinsheng Wang;
Gates, Kent S.

Publication type:

Article

Bidirectional terminators in Saccharomyces cerevisiae prevent cryptic transcription from invading neighboring genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6417, doi. 10.1093/nar/gkx242

By:

Uwimana, Nicole;
Collin, Pierre;
Jeronimo, Célia;
Haibe-Kains, Benjamin;
Robert, François

Publication type:

Article

PRL-3 promotes telomere deprotection and chromosomal instability.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6546, doi. 10.1093/nar/gkx392

By:

Shenyi Lian;
Lin Meng;
Yongyong Yang;
Ting Ma;
Xiaofang Xing;
Qin Feng;
Qian Song;
Caiyun Liu;
Zhihua Tian;
Like Qu;
Chengchao Shou

Publication type:

Article

Structure and conformational dynamics of scaffolded DNA origami nanoparticles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6284, doi. 10.1093/nar/gkx378

By:

Keyao Pan;
Bricker, William P.;
Ratanalert, Sakul;
Bathe, Mark

Publication type:

Article

The LSH/HELLS homolog Irc5 contributes to cohesin association with chromatin in yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6404, doi. 10.1093/nar/gkx240

By:

Litwin, Ireneusz;
Bakowski, Tomasz;
Maciaszczyk-Dziubinska, Ewa;
Wysocki, Robert

Publication type:

Article

Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6299, doi. 10.1093/nar/gkx386

By:

Jian Wang;
Kangkun Mao;
Yunjie Zhao;
Chen Zeng;
Jianjin Xiang;
Yi Zhang;
Yi Xiao

Publication type:

Article

Human DDX21 binds and unwinds RNA guanine quadruplexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6656, doi. 10.1093/nar/gkx380

By:

McRae, Ewan K. S.;
Booy, Evan P.;
Moya-Torres, Aniel;
Ezzati, Peyman;
Stetefeld, Jörg;
McKenna, Sean A.

Publication type:

Article

Essential role for non-canonical poly(A) polymerase GLD4 in cytoplasmic polyadenylation and carbohydrate metabolism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6793, doi. 10.1093/nar/gkx239

By:

Jihae Shin;
Ki Young Paek;
Ivshina, Maria;
Stackpole, Emily E.;
Richter, Joel D.

Publication type:

Article

Kaposi’s sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6805, doi. 10.1093/nar/gkx241

By:

Sztuba-Solinska, Joanna;
Rausch, Jason W.;
Smith, Rodman;
Miller, Jennifer T.;
Whitby, Denise;
Le Grice, Stuart F. J.

Publication type:

Article

An RRM–ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6761, doi. 10.1093/nar/gkx225

By:

Collins, Katherine M.;
Kainov, Yaroslav A.;
Christodolou, Evangelos;
Ray, Debashish;
Morris, Quaid;
Hughes, Timothy;
Taylor, Ian A.;
Makeyev, Eugene V.;
Ramos, Andres

Publication type:

Article

A new model for ancient DNA decay based on paleogenomic meta-analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6310, doi. 10.1093/nar/gkx361

By:

Kistler, Logan;
Ware, Roselyn;
Smith, Oliver;
Collins, Matthew;
Allaby, Robin G.

Publication type:

Article

Transposition of Mutator–like transposable elements (MULEs) resembles hAT and Transib elements and V(D)J recombination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6644, doi. 10.1093/nar/gkx357

By:

Kun Liu;
Wessler, Susan R.

Publication type:

Article

MLL3/MLL4 are required for CBP/p300 binding on enhancers and super-enhancer formation in brown adipogenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6388, doi. 10.1093/nar/gkx234

By:

Binbin Lai;
Ji-Eun Lee;
Younghoon Jang;
Lifeng Wang;
Weiqun Peng;
Kai Ge

Publication type:

Article

A synergistic network of interactions promotes the formation of in vitro processing bodies and protects mRNA against decapping.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6911, doi. 10.1093/nar/gkx353

By:

Schütz, Stefan;
Nöldeke, Erik R.;
Sprangers, Remco

Publication type:

Article

The RNA binding protein Npl3 promotes resection of DNA double-strand breaks by regulating the levels of Exo1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6530, doi. 10.1093/nar/gkx347

By:

Colombo, Chiara Vittoria;
Trovesi, Camilla;
Menin, Luca;
Longhese, Maria Pia;
Clerici, Michela

Publication type:

Article

Identification and dynamic changes of RNAs isolated from RALY-containing ribonucleoprotein complexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6775, doi. 10.1093/nar/gkx235

By:

Rossi, Annalisa;
Moro, Albertomaria;
Tebaldi, Toma;
Cornella, Nicola;
Gasperini, Lisa;
Lunelli, Lorenzo;
Quattrone, Alessandro;
Viero, Gabriella;
Macchi, Paolo

Publication type:

Article

The effect of increasing numbers of repeats on TAL effector DNA binding specificity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6960, doi. 10.1093/nar/gkx342

By:

Rinaldi, Fabio C.;
Doyle, Lindsey A.;
Stoddard, Barry L.;
Bogdanove, Adam J.

Publication type:

Article

Transcriptional mutagenesis reduces splicing fidelity in mammalian cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6520, doi. 10.1093/nar/gkx339

By:

Paredes, João A.;
Ezerskyte, Monika;
Bottai, Matteo;
Dreij, Kristian

Publication type:

Article

Molecular basis for the methylation specificity of ATXR5 for histone H3.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6375, doi. 10.1093/nar/gkx224

By:

Bergamin, Elisa;
Sarvan, Sabina;
Malette, Josée;
Eram, Mohammad S.;
Sylvain Yeung;
Mongeon, Vanessa;
Joshi, Monika;
Brunzelle, Joseph S.;
Michaels, Scott D.;
Blais, Alexandre;
Vedadi, Masoud;
Couture, Jean-François

Publication type:

Article

RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6945, doi. 10.1093/nar/gkx324

By:

Pedro López-Alonso, Jorge;
Tatsuya Kaminishi;
Takeshi Kikuchi;
Yuya Hirata;
Iturrioz, Idoia;
Dhimole, Neha;
Schedlbauer, Andreas;
Yoichi Hase;
Goto, Simon;
Kurita, Daisuke;
Muto, Akira;
Shu Zhou;
Chieko Naoe;
Mills, Deryck J.;
Gil-Carton, David;
Chie Takemoto;
Hyouta Himeno;
Fucini, Paola;
Connell, Sean R.

Publication type:

Article

The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6923, doi. 10.1093/nar/gkx287

By:

Schumacher, Maria A.;
Wenjie Zeng;
Findlay, Kim C.;
Buttner, Mark J.;
Brennan, Richard G.;
Tschowri, Natalia

Publication type:

Article

WIG1 is crucial for AGO2-mediated ACOT7 mRNA silencing via miRNA-dependent and -independent mechanisms.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6894, doi. 10.1093/nar/gkx307

By:

Hyung Chul Lee;
Seung Hee Jung;
Hyun Jung Hwang;
Donghee Kang;
De, Supriyo;
Dudekula, Dawood B.;
Martindale, Jennifer L.;
Byungkyu Park;
Seung Kuk Park;
Eun Kyung Lee;
Jeong-Hwa Lee;
Sunjoo Jeong;
Kyungsook Han;
Heon Joo Park;
Young-Gyu Ko;
Gorospe, Myriam;
Jae-Seon Lee

Publication type:

Article

The non-stop decay mRNA surveillance pathway is required for oxidative stress tolerance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6881, doi. 10.1093/nar/gkx306

By:

Jamar, Nur H.;
Kritsiligkou, Paraskevi;
Grant, Chris M.

Publication type:

Article

Capturing a mammalian DNA polymerase extending from an oxidized nucleotide.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6934, doi. 10.1093/nar/gkx293

By:

Whitaker, Amy M.;
Smith, Mallory R.;
Schaich, Matthew A.;
Freudenthal, Bret D.

Publication type:

Article

The elongation factor Spt4/5 regulates RNA polymerase II transcription through the nucleosome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6362, doi. 10.1093/nar/gkx220

By:

Crickard, John B.;
Jaehyoun Lee;
Tae-Hee Lee;
Reese, Joseph C.

Publication type:

Article

Sak and Sak4 recombinases are required for bacteriophage replication in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6507, doi. 10.1093/nar/gkx308

By:

Neamah, Maan M.;
Mir-Sanchis, Ignacio;
López-Sanz, María;
Acosta, Sonia;
Baquedano, Ignacio;
Haag, Andreas F.;
Marina, Alberto;
Ayora, Silvia;
Penadés, José R.

Publication type:

Article

SUMO conjugation to spliceosomal proteins is required for efficient pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6729, doi. 10.1093/nar/gkx213

By:

Pozzi, Berta;
Bragado, Laureano;
Will, Cindy L.;
Mammi, Pablo;
Risso, Guillermo;
Urlaub, Henning;
Lührmann, Reinhard;
Srebrow, Anabella

Publication type:

Article

Histone deacetylase class-I inhibition promotes epithelial gene expression in pancreatic cancer cells in a BRD4- and MYC-dependent manner.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6334, doi. 10.1093/nar/gkx212

By:

Mishra, Vivek Kumar;
Wegwitz, Florian;
Kosinsky, Robyn Laura;
Sen, Madhobi;
Baumgartner, Roland;
Wulff, Tanja;
Siveke, Jens T.;
Schildhaus, Hans-Ulrich;
Najafova, Zeynab;
Kari, Vijayalakshmi;
Kohlhof, Hella;
Hessmann, Elisabeth;
Johnsen, Steven A.

Publication type:

Article

Integrative analysis identifies targetable CREB1/FoxA1 transcriptional co-regulation as a predictor of prostate cancer recurrence.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 11, p. 6993, doi. 10.1093/nar/gkx282
Publication type:: Article

A new promoter element associated with daily time keeping in Drosophila.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6459, doi. 10.1093/nar/gkx268

By:

Sharp, Brandi;
Paquet, Eric;
Naef, Felix;
Bafna, Akanksha;
Wijnen, Herman

Publication type:

Article

Replication and repair of a reduced 2'-deoxyguanosine-abasic site interstrand cross-link in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6486, doi. 10.1093/nar/gkx266

By:

Price, Nathan E.;
Lin Li;
Gates, Kent S.;
Yinsheng Wang

Publication type:

Article

SeqA structures behind Escherichia coli replication forks affect replication elongation and restart mechanisms.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6471, doi. 10.1093/nar/gkx263

By:

Pedersen, Ida Benedikte;
Helgesen, Emily;
Flåtten, Ingvild;
Fossum-Raunehaug, Solveig;
Skarstad, Kirsten

Publication type:

Article