Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 1

Results: 44

Reactive sulfur species regulate tRNA methylthiolation and contribute to insulin secretion.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 435, doi. 10.1093/nar/gkw745

By:

Nozomu Takahashi;
Fan-Yan Wei;
Sayaka Watanabe;
Mayumi Hirayama;
Yuya Ohuchi;
Atsushi Fujimura;
Taku Kaitsuka;
Isao Ishii;
Tomohiro Sawa;
Hideki Nakayama;
Takaaki Akaike;
Kazuhito Tomizawa

Publication type:

Article

Co-regulation of paralog genes in the three-dimensional chromatin architecture.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 81, doi. 10.1093/nar/gkw813

By:

Ibn-Salem, Jonas;
Muro, Enrique M.;
Andrade-Navarro, Miguel A.

Publication type:

Article

SPOP-containing complex regulates SETD2 stability and H3K36me3-coupled alternative splicing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 92, doi. 10.1093/nar/gkw814

By:

Kun Zhu;
Pin-Ji Lei;
Lin-Gao Ju;
Xiang Wang;
Kai Huang;
Bo Yang;
Changwei Shao;
Yuan Zhu;
Gang Wei;
Xiang-Dong Fu;
Lianyun Li;
Min Wu

Publication type:

Article

RHAU helicase stabilizes G4 in its nucleotide-free state and destabilizes G4 upon ATP hydrolysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 206, doi. 10.1093/nar/gkw881

By:

Huijuan You;
Lattmann, Simon;
Rhodes, Daniela;
Jie Yan

Publication type:

Article

Asymmetric positioning of Cas1-2 complex and Integration Host Factor induced DNA bending guide the unidirectional homing of protospacer in CRISPR-Cas type I-E system.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 367, doi. 10.1093/nar/gkw1151

By:

Yoganand, K. N. R.;
Sivathanu, R.;
Nimkar, Siddharth;
Anand, B.

Publication type:

Article

SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 181, doi. 10.1093/nar/gkw850

By:

Yu Yang;
Honggui La;
Kai Tang;
Daisuke Miki;
Lan Yang;
Bangshing Wang;
Cheng-Guo Duan;
Wenfeng Nie;
Xingang Wang;
Siwen Wang;
Yufeng Pan;
Tran, Elizabeth J.;
Lizhe An;
Huiming Zhang;
Jian-Kang Zhu

Publication type:

Article

H3K9me3 demethylase Kdm4d facilitates the formation of pre-initiative complex and regulates DNA replication.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 169, doi. 10.1093/nar/gkw848

By:

Rentian Wu;
Zhiquan Wang;
Honglian Zhang;
Haiyun Gan;
Zhiguo Zhang

Publication type:

Article

Temporal self-regulation of transposition through host-independent transposase rodlet formation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 353, doi. 10.1093/nar/gkw1115

By:

Woodard, Lauren E.;
Downes, Laura M.;
Yi-Chien Lee;
Kaja, Aparna;
Terefe, Eyuel S.;
Wilson, Matthew H.

Publication type:

Article

Regulated complex assembly safeguards the fidelity of Sleeping Beauty transposition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 311, doi. 10.1093/nar/gkw1164

By:

Yongming Wang;
Pryputniewicz-Dobrinska, Diana;
Nagy, Enikö Éva;
Kaufman, Christopher D.;
Singh, Manvendra;
Yant, Steve;
Jichang Wang;
Dalda, Anna;
Kay, Mark A.;
Ivics, Zoltán;
Izsvák, Zsuzsanna

Publication type:

Article

Identification of a novel distal regulatory element of the human Neuroglobin gene by the chromosome conformation capture approach.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 115, doi. 10.1093/nar/gkw820

By:

Kin Tung Tam;
Ping Kei Chan;
Wei Zhang;
Pui Pik Law;
Zhipeng Tian;
Chi Fung Chan, Godfrey;
Philipsen, Sjaak;
Festenstein, Richard;
Kian Cheng Tan-Un

Publication type:

Article

Methods to increase reproducibility in differential gene expression via meta-analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw797

By:

Sweeney, Timothy E.;
Haynes, Winston A.;
Vallania, Francesco;
Ioannidis, John P.;
Khatri, Purvesh

Publication type:

Article

Activation of cGAS-dependent antiviral responses by DNA intercalating agents.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 198, doi. 10.1093/nar/gkw878

By:

Pépin, Genevivèe;
Nejad, Charlotte;
Thomas, Belinda J.;
Ferrand, Jonathan;
McArthur, Kate;
Bardin, Philip G.;
Williams, Bryan R. G.;
Gantier, Michael P.

Publication type:

Article

ADAR1 restricts LINE-1 retrotransposition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 155, doi. 10.1093/nar/gkw834

By:

Orecchini, Elisa;
Doria, Margherita;
Antonioni, Ambra;
Galardi, Silvia;
Ciafrè, Silvia Anna;
Frassinelli, Loredana;
Mancone, Carmine;
Montaldo, Claudia;
Tripodi, Marco;
Michienzi, Alessandro

Publication type:

Article

Esc2 promotes Mus81 complex-activity via its SUMO-like and DNA binding domains.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 215, doi. 10.1093/nar/gkw882

By:

Sebesta, Marek;
Urulangodi, Madhusoodanan;
Stefanovie, Barbora;
Szakal, Barnabas;
Pacesa, Martin;
Lisby, Michael;
Branzei, Dana;
Krejci, Lumir

Publication type:

Article

A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 496, doi. 10.1093/nar/gkw1023

By:

Apel, Amanda Reider;
d'Espaux, Leo;
Wehrs, Maren;
Sachs, Daniel;
A. Li, Rachel;
Tong, Gary J.;
Garber, Megan;
Nnadi, Oge;
Zhuang, William;
Hillson, Nathan J.;
Keasling, Jay D.;
Mukhopadhyay, Aindrila

Publication type:

Article

Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 461, doi. 10.1093/nar/gkw1113

By:

Pica, Andrea;
Krauss, Irene Russo;
Parente, Valeria;
Hisae Tateishi-Karimata;
Satoru Nagatoishi;
Kouhei Tsumoto;
Naoki Sugimoto;
Sica, Filomena

Publication type:

Article

TALEN/CRISPR-mediated engineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw805

By:

Senís, Elena;
Mockenhaupt, Stefan;
Rupp, Daniel;
Bauer, Tobias;
Paramasivam, Nagarajan;
Knapp, Bettina;
Gronych, Jan;
Grosse, Stefanie;
Windisch, Marc P.;
Schmidt, Florian;
Theis, Fabian J.;
Eils, Roland;
Lichter, Peter;
Schlesner, Matthias;
Bartenschlager, Ralf;
Grimm, Dirk

Publication type:

Article

A genome wide dosage suppressor network reveals genomic robustness.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 255, doi. 10.1093/nar/gkw1148

By:

Patra, Biranchi;
Yoshiko Kon;
Yadav, Gitanjali;
Sevold, Anthony W.;
Frumkin, Jesse P.;
Vallabhajosyula, Ravishankar R.;
Hintze, Arend;
Østman, Bjørn;
Schossau, Jory;
Bhan, Ashish;
Marzolf, Bruz;
Tamashiro, Jenna K.;
Kaur, Amardeep;
Baliga, Nitin S.;
Grayhack, Elizabeth J.;
Adami, Christoph;
Galas, David J.;
Raval, Alpan;
Phizicky, Eric M.;
Ray, Animesh

Publication type:

Article

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 54, doi. 10.1093/nar/gkw1061

By:

Schmidt, Florian;
Gasparoni, Nina;
Gasparoni, Gilles;
Gianmoena, Kathrin;
Cadenas, Cristina;
Polansky, Julia K.;
Ebert, Peter;
Barann, Matthias;
Sinha, Anupam;
Fröhler, Sebastian;
Jieyi Xiong;
Amirabad, Azim Dehghani;
Ardakani, Fatemeh Behjati;
Hutter, Barbara;
Zipprich, Gideon;
Felder, Bärbel;
Eils, Jürgen;
Brors, Benedikt;
Wei Chen;
Hengstler, Jan G.

Publication type:

Article

Topology independent comparison of RNA 3D structures using the CLICK algorithm.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw819

By:

Minh N. Nguyen;
Sim, Adelene Y. L.;
Yue Wan;
Madhusudhan, M. S.;
Verma, Chandra

Publication type:

Article

The dual role of LSD1 and HDAC3 in STAT5-dependent transcription is determined by protein interactions, binding affinities, motifs and genomic positions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 142, doi. 10.1093/nar/gkw832

By:

Nanou, Aikaterini;
Toumpeki, Chrisavgi;
Lavigne, Matthieu D.;
Lazou, Vassiliki;
Demmers, Jeroen;
Paparountas, Triantafillos;
Thanos, Dimitris;
Katsantoni, Eleni

Publication type:

Article

BRD4 localization to lineage-specific enhancers is associated with a distinct transcription factor repertoire.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 127, doi. 10.1093/nar/gkw826

By:

Najafova, Zeynab;
Tirado-Magallanes, Roberto;
Subramaniam, Malayannan;
Hossan, Tareq;
Schmidt, Geske;
Nagarajan, Sankari;
Baumgart, Simon J.;
Mishra, Vivek Kumar;
Bedi, Upasana;
Hesse, Eric;
Knapp, Stefan;
Hawse, John R.;
Johnsen, Steven A.

Publication type:

Article

A single molecule study of a fluorescently labeled telomestatin derivative and G-quadruplex interactions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 288, doi. 10.1093/nar/gkw1090

By:

Parastoo Maleki;
Yue Ma;
Keisuke Iida;
Kazuo Nagasawa;
Hamza Balci

Publication type:

Article

Visualization of self-delivering hydrophobically modified siRNA cellular internalization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 15, doi. 10.1093/nar/gkw1005

By:

Ly, Socheata;
Navaroli, Deanna M.;
Didiot, Marie-Cécile;
Cardia, James;
Pandarinathan, Lakshmipathi;
Alterman, Julia F.;
Fogarty, Kevin;
Standley, Clive;
Lifshitz, Lawrence M.;
Bellve, Karl D.;
Prot, Matthieu;
Echeverria, Dimas;
Corvera, Silvia;
Khvorova, Anastasia

Publication type:

Article

ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw809

By:

Guipeng Li;
Yang Chen;
Snyder, Michael P.;
Zhang, Michael Q.

Publication type:

Article

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 67, doi. 10.1093/nar/gkw1027

By:

Po-E Li;
Chien-Chi Lo;
Anderson, Joseph J.;
Davenport, Karen W.;
Bishop-Lilly, Kimberly A.;
Yan Xu;
Ahmed, Sanaa;
Shihai Feng;
Mokashi, Vishwesh P.;
Chain, Patrick S. G.

Publication type:

Article

An mRNA-specific tRNA<sub>i</sub> carrier eIF2A plays a pivotal role in cell proliferation under stress conditions: stress-resistant translation of c-Src mRNA is mediated by eIF2A.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 296, doi. 10.1093/nar/gkw1117

By:

Oh Sung Kwon;
Sihyeon An;
Eunah Kim;
Jinbae Yu;
Ka Young Hong;
Jae Seung Lee;
Sung Key Jang

Publication type:

Article

Control of the negative IRES trans-acting factor KHSRP by ubiquitination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 271, doi. 10.1093/nar/gkw1042

By:

Yu-An Kung;
Chuan-Tien Hung;
Kun-Yi Chien;
Shin-Ru Shih

Publication type:

Article

Alternative splicing of U2AF1 reveals a shared epression mechanism for duplicated exons.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 417, doi. 10.1093/nar/gkw733

By:

Kralovicova, Jana;
Vorechovsky, Igor

Publication type:

Article

Rad51 and RecA juxtapose dsDNA ends ready for DNA ligase-catalyzed end-joining under recombinase-suppressive conditions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 337, doi. 10.1093/nar/gkw998

By:

Naoto Konomura;
Naoto Arai;
Takeshi Shinohara;
Jun Kobayashi;
Wakana Iwasaki;
Shukuko Ikawa;
Kohji Kusano;
Takehiko Shibata

Publication type:

Article

Thermotoga maritima NusG: domain interaction mediates autoinhibition and thermostability.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 446, doi. 10.1093/nar/gkw1111

By:

Drögemüller, Johanna;
Schneider, Christin;
Schweimer, Kristian;
Strauß, Martin;
Wöhrl, Birgitta M.;
Rösch, Paul;
Knauer, Stefan H.

Publication type:

Article

A ribosome profiling study of mRNA cleavage by the endonuclease RelE.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 327, doi. 10.1093/nar/gkw944

By:

Jae-Yeon Hwang;
Buskirk, Allen R.

Publication type:

Article

COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw798

By:

Long Hu;
Zhiyu Xu;
Boqin Hu;
Lu, Zhi John

Publication type:

Article

A Pap1-Oxs1 signaling pathway for disulfide stress in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 106, doi. 10.1093/nar/gkw818

By:

Yumei He;
Yan Chen;
Wen Song;
Lei Zhu;
Zhicheng Dong;
Ow, David W.

Publication type:

Article

Division of labor among Mycobacterium smegmatis RNase H enzymes: RNase H1 activity of RnhA or RnhC is essential for growth whereas RnhB and RnhA guard against killing by hydrogen peroxide in stationary phase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw1046

By:

Gupta, Richa;
Chatterjee, Debashree;
Glickman, Michael S.;
Shuman, Stewart

Publication type:

Article

ATM induces MacroD2 nuclear export upon DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 244, doi. 10.1093/nar/gkw904

By:

Golia, Barbara;
Moeller, Giuliana Katharina;
Jankevicius, Gytis;
Schmidt, Andreas;
Hegele, Anna;
Preißer, Julia;
Mai Ly Tran;
Imhof, Axel;
Timinszky, Gyula

Publication type:

Article

The bromodomain protein BRD4 regulates splicing during heat shock.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 382, doi. 10.1093/nar/gkw729

By:

Hussong, Michelle;
Kaehler, Christian;
Kerick, Martin;
Grimm, Christina;
Franz, Alexandra;
Timmermann, Bernd;
Welzel, Franziska;
Isensee, Jörg;
Hucho, Tim;
Krobitsch, Sylvia;
Schweiger, Michal R.

Publication type:

Article

RNA-sequencing of a mouse-model of spinal muscular atrophy reveals tissue-wide changes in splicing of U12-dependent introns.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 395, doi. 10.1093/nar/gkw731

By:

Doktor, Thomas Koed;
Yimin Hua;
Andersen, Henriette Skovgaard;
Brøner, Sabrina;
Ying Hsiu Liu;
Wieckowska, Anna;
Dembic, Maja;
Bruun, Gitte Hoffmann;
Krainer, Adrian R.;
Andresen, Brage Storstein

Publication type:

Article

Structure and folding of the Tetrahymena telomerase RNA pseudoknot.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 482, doi. 10.1093/nar/gkw1153

By:

Cash, Darian D.;
Feigon, Juli

Publication type:

Article

Assembly of supramolecular DNA complexes containing both G-quadruplexes and i-motifs by enhancing the G-repeat-bearing capacity of i-motifs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 26, doi. 10.1093/nar/gkw1049

By:

Yanwei Cao;
Shang Gao;
Yuting Yan;
Bruist, Michael F.;
Bing Wang;
Xinhua Guo

Publication type:

Article

Structures of human SRP72 complexes provide insights into SRP RNA remodeling and ribosome interaction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 470, doi. 10.1093/nar/gkw1124

By:

Becker, Matthias M. M.;
Lapouge, Karine;
Segnitz, Bernd;
Wild, Klemens;
Sinning, Irmgard

Publication type:

Article

A double-strand break can trigger immunoglobulin gene conversion.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 231, doi. 10.1093/nar/gkw887

By:

Bastianello, Giulia;
Arakawa, Hiroshi

Publication type:

Article

FANCJ is essential to maintain microsatellite structure genome-wide during replication stress.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 1, p. 509, doi. 10.1093/nar/gkw1091
Publication type:: Article

Alignment-free d*<sub>2</sub> oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 1, p. 39, doi. 10.1093/nar/gkw1002

By:

Ahlgren, Nathan A.;
Jie Ren;
Yang Young Lu;
Fuhrman, Jed A.;
Fengzhu Sun

Publication type:

Article