Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 8

Results: 47

The downregulation of the RNA-binding protein Staufen2 in response to DNA damage promotes apoptosis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3695, doi. 10.1093/nar/gkw057

By:

Xin Zhang;
Trépanier, Véronique;
Beaujois, Remy;
Viranaicken, Wildriss;
Drobetsky, Elliot;
DesGroseillers, Luc

Publication type:

Article

Dicer interacts with SIRT7 and regulates H3K18 deacetylation in response to DNA damaging agents.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3629, doi. 10.1093/nar/gkv1504

By:

Pei-Ying Zhang;
Guiling Li;
Zhu-Jun Deng;
Li-Yuan Liu;
Li Chen;
Jun-Zhou Tang;
Yu-Qun Wang;
Su-Ting Cao;
Yu-Xiao Fang;
Fuping Wen;
Yunsheng Xu;
Xiaoming Chen;
Ke-Qing Shi;
Wen-Feng Li;
Congying Xie;
Kai-Fu Tang

Publication type:

Article

Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3513, doi. 10.1093/nar/gkw221

By:

Zhang, Dapeng;
Burroughs, A. Maxwell;
Vidal, Newton D.;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Structures of an all-α protein running along the DNA major groove.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3936, doi. 10.1093/nar/gkw133

By:

Li-Yan Yu;
Wang Cheng;
Kang Zhou;
Wei-Fang Li;
Hong-Mei Yu;
Xinlei Gao;
Xudong Shen;
Qingfa Wu;
Yuxing Chen;
Cong-Zhao Zhou

Publication type:

Article

COSMOS: accurate detection of somatic structural variations through asymmetric comparison between tumor and normal samples.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkw026

By:

Koichi Yamagata;
Ayako Yamanishi;
Chikara Kokubu;
Junji Takeda;
Jun Sese

Publication type:

Article

CRISPR-mediated control of the bacterial initiation of replication.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3801, doi. 10.1093/nar/gkw214

By:

Wiktor, Jakub;
Lesterlin, Christian;
Sherratt, David J.;
Dekker, Cees

Publication type:

Article

Robust detection of alternative splicing in a population of single cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1525

By:

Welch, Joshua D.;
Yin Hu;
Prins, Jan F.

Publication type:

Article

A novel transition pathway of ligand-induced topological conversion from hybrid forms to parallel forms of human telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3958, doi. 10.1093/nar/gkw145

By:

Zi-Fu Wang;
Ming-Hao Li;
Wei-Wen Chen;
Shang-Te Danny Hsu;
Ta-Chau Chang

Publication type:

Article

Noncanonical registers and base pairs in human 5' splice-site selection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3908, doi. 10.1093/nar/gkw163

By:

Jiazi Tan;
Jia Xin Jessie Ho;
Zhensheng Zhong;
Shufang Luo;
Gang Chen;
Xavier Roca

Publication type:

Article

FRET-based assay to screen inhibitors of HIV-1 reverse transcriptase and nucleocapsid protein.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1532

By:

Sharma, Kamal K.;
Przybilla, Frédéric;
Restle, Tobias;
Godet, Julien;
Mély, Yves

Publication type:

Article

ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkw022

By:

Schwarz, Roland F.;
Tamuri, Asif U.;
Kultys, Marek;
King, James;
Godwin, James;
Florescu, Ana M.;
Schultz, Jörg;
Goldman, Nick

Publication type:

Article

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3829, doi. 10.1093/nar/gkw228

By:

Schellenberg, Matthew J.;
Perera, Lalith;
Strom, Christina N.;
Waters, Crystal A.;
Monian, Brinda;
Appel, C. Denise;
Vilas, Caroline K.;
Williams, Jason G.;
Ramsden, Dale A.;
Williams, R. Scott

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 8, p. 3969, doi. 10.1093/nar/gkw078
Publication type:: Article

Efficient enzymatic synthesis and dual-colour fluorescent labelling of DNA probes using long chain azido-dUTP and BCN dyes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkw028

By:

Xiaomei Ren;
El-Sagheer, Afaf H.;
Brown, Tom

Publication type:

Article

Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3750, doi. 10.1093/nar/gkw219

By:

Quilez, Javier;
Guilmatre, Audrey;
Garg, Paras;
Highnam, Gareth;
Gymrek, Melissa;
Erlich, Yaniv;
Joshi, Ricky S.;
Mittelman, David;
Sharp, Andrew J.

Publication type:

Article

Introns regulate the production of ribosomal proteins by modulating splicing of duplicated ribosomal protein genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3878, doi. 10.1093/nar/gkw140

By:

Petibon, Cyrielle;
Parenteau, Julie;
Catala, Mathieu;
Elela, Sherif Abou

Publication type:

Article

Cancer-predisposition gene KLLN maintains pericentric H3K9 trimethylation protecting genomic stability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3586, doi. 10.1093/nar/gkv1481

By:

Nizialek, Emily A.;
Sankunny, Madhav;
Niazi, Farshad;
Eng, Charis

Publication type:

Article

Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3946, doi. 10.1093/nar/gkw143

By:

Moon, Andrea F.;
Krahn, Juno M.;
Xun Lu;
Cuneo, Matthew J.;
Pedersen, Lars C.

Publication type:

Article

Molecularly resolved label-free sensing of single nucleobase mismatches by interfacial LNA probes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3739, doi. 10.1093/nar/gkw197

By:

Mishra, Sourav;
Lahiri, Hiya;
Banerjee, Siddhartha;
Mukhopadhyay, Rupa

Publication type:

Article

G-quadruplex-interacting compounds alter latent DNA replication and episomal persistence of KSHV.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3675, doi. 10.1093/nar/gkw038

By:

Madireddy, Advaitha;
Purushothaman, Pravinkumar;
Loosbroock, Christopher P.;
Robertson, Erle S.;
Schildkraut, Carl L.;
Verma, Subhash C.

Publication type:

Article

Distribution of miRNA expression across human tissues.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3865, doi. 10.1093/nar/gkw116

By:

Ludwig, Nicole;
Leidinger, Petra;
Becker, Kurt;
Backes, Christina;
Fehlmann, Tobias;
Pallasch, Christian;
Rheinheimer, Steffi;
Meder, Benjamin;
Stähler, Cord;
Meese, Eckart;
Keller, Andreas

Publication type:

Article

Hsp90 protein interacts with phosphorothioate oligonucleotides containing hydrophobic 2'-modifications and enhances antisense activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3892, doi. 10.1093/nar/gkw144

By:

Xue-Hai Liang;
Wen Shen;
Hong Sun;
Kinberger, Garth A.;
Prakash, Thazha P.;
Nichols, Joshua G.;
Crooke, Stanley T.

Publication type:

Article

ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1518

By:

Lelieveld, Stefan H.;
Schütte, Judith;
Dijkstra, Maurits J. J.;
Bawono, Punto;
Kinston, Sarah J.;
Göttgens, Berthold;
Heringa, Jaap;
Bonzanni, Nicola

Publication type:

Article

FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3534, doi. 10.1093/nar/gkw222

By:

Kuchta, Krzysztof;
Muszewska, Anna;
Knizewski, Lukasz;
Steczkiewicz, Kamil;
Wyrwicz, Lucjan S.;
Pawlowski, Krzysztof;
Rychlewski, Leszek;
Ginalski, Krzysztof

Publication type:

Article

Pif1 removes a Rap1-dependent barrier to the strand displacement activity of DNA polymerase δ.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3811, doi. 10.1093/nar/gkw181

By:

Koc, Katrina N.;
Singh, Saurabh P.;
Stodola, Joseph L.;
Burgers, Peter M.;
Galletto, Roberto

Publication type:

Article

Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3922, doi. 10.1093/nar/gkw130

By:

Klaus, Miriam;
Prokoph, Nina;
Girbig, Mathias;
Xuecong Wang;
Yong-Heng Huang;
Srivastava, Yogesh;
Hou, Linlin;
Narasimhan, Kamesh;
Kolatkar, Prasanna R.;
Francois, Mathias;
Jauch, Ralf

Publication type:

Article

Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3763, doi. 10.1093/nar/gkw196

By:

Jacobson, David R.;
Saleh, Omar A.

Publication type:

Article

Involvement of condensin-directed gene associations in the organization and regulation of chromosome territories during the cell cycle.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3618, doi. 10.1093/nar/gkv1502

By:

Osamu Iwasaki;
Corcoran, Christopher J.;
Noma, Ken-ichi

Publication type:

Article

Polymerases ε and ∂ repair dysfunctional telomeres facilitated by salt.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3728, doi. 10.1093/nar/gkw071

By:

Ivanova, Iglika G.;
Maringele, Laura

Publication type:

Article

Functional interplay between NTP leaving group and base pair recognition during RNA polymerase II nucleotide incorporation revealed by methylene substitution.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3820, doi. 10.1093/nar/gkw220

By:

Hwang, Candy S.;
Liang Xu;
Wei Wang;
Ulrich, Sébastien;
Lu Zhang;
Chong, Jenny;
Ji Hyun Shin;
Xuhui Huang;
Kool, Eric T.;
McKenna, Charles E.;
Wang, Dong

Publication type:

Article

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkw030

By:

Hughey, Jacob J.;
Hastie, Trevor;
Butte, Atul J.

Publication type:

Article

Evidence for a non-canonical role of HDAC5 in regulation of the cardiac Ncx1 and Bnp genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3610, doi. 10.1093/nar/gkv1496

By:

Harris, Lillianne G.;
Wang, Sabina H.;
Mani, Santhosh K.;
Kasiganesan, Harinath;
Chou, James;
Menick, Donald R.

Publication type:

Article

G-register exchange dynamics in guanine quadruplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3481, doi. 10.1093/nar/gkw190

By:

Harkness, Robert W.;
Mittermaier, Anthony K.

Publication type:

Article

An interplay of the base excision repair and mismatch repair pathways in active DNA demethylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3713, doi. 10.1093/nar/gkw059

By:

Grin, Inga;
Ishchenko, Alexander A.

Publication type:

Article

Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1533

By:

Baohui Chen;
Jeffrey Hu;
Almeida, Ricardo;
Harrison Liu;
Balakrishnan, Sanjeev;
Covill-Cooke, Christian;
Lim, Wendell A.;
Bo Huang

Publication type:

Article

In vivo blunt-end cloning through CRISPR/Cas9-facilitated non-homologous end-joining.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1542

By:

Geisinger, Jonathan M.;
Turan, Sören;
Hernandez, Sophia;
Spector, Laura P.;
Calos, Michele P.

Publication type:

Article

An essential role for UTX in resolution and activation of bivalent promoters.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3659, doi. 10.1093/nar/gkv1516

By:

Dhar, Shilpa S.;
Sung-Hun Lee;
Kaifu Chen;
Guangjing Zhu;
WonKyung Oh;
Allton, Kendra;
Gafni, Ohad;
Young Zoon Kim;
Tomoiga, Alin S.;
Barton, Michelle Craig;
Hanna, Jacob H.;
Zhibin Wang;
Wei Li;
Min Gyu Lee

Publication type:

Article

Genome-wide analysis reveals NRP1 as a direct HIF1α-E2F7 target in the regulation of motorneuron guidance in vivo.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3549, doi. 10.1093/nar/gkv1471

By:

de Bruin, Alain;
Cornelissen, Peter W. A.;
Kirchmaier, Bettina C.;
Mokry, Michal;
Iich, Elhadi;
Nirmala, Ella;
Kuo-Hsuan Liang;
Vβgh, Anna M. D.;
Scholman, Koen T.;
Koerkamp, Marian J. Groot;
Holstege, Frank C.;
Cuppen, Edwin;
Schulte-Merker, Stefan;
Bakker, Walbert J.

Publication type:

Article

OxyR-dependent formation of DNA methylation patterns in OpvAB<sup>OFF</sup> and OpvAB<sup>ON</sup> cell lineages of Salmonella enterica.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3595, doi. 10.1093/nar/gkv1483

By:

Cota, Ignacio;
Bunk, Boyke;
Spröer, Cathrin;
Overmann, Jörg;
König, Christoph;
Casadesús, Josep

Publication type:

Article

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1507

By:

Colaprico, Antonio;
Silva, Tiago C.;
Olsen, Catharina;
Garofano, Luciano;
Cava, Claudia;
Garolini, Davide;
Sabedot, Thais S.;
Malta, Tathiane M.;
Pagnotta, Stefano M.;
Castiglioni, Isabella;
Ceccarelli, Michele;
Bontempi, Gianluca;
Noushmehr, Houtan

Publication type:

Article

The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3643, doi. 10.1093/nar/gkv1512

By:

García-Martínez, José;
Delgado-Ramos, Lidia;
Ayala, Guillermo;
Pelechano, Vicent;
Medina, Daniel A.;
Carrasco, Fany;
González, Ramón;
Andrés-León, Eduardo;
Steinmetz, Lars;
Warringer, Jonas;
Chávez, Sebastián;
Pérez-Ortín, José E.

Publication type:

Article

MiR-26 down-regulates TNF-α/NF-kB signalling and IL-6 expression by silencing HMGA1 and MALT1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3772, doi. 10.1093/nar/gkw205

By:

Chen, Chyi-Ying A.;
Chang, Jeffrey T.;
Yi-Fang Ho;
Ann-Bin Shyu

Publication type:

Article

The oncogenic triangle of HMGA2, LIN28B and IGF2BP1 antagonizes tumor-suppressive actions of the let-7 family.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3845, doi. 10.1093/nar/gkw099

By:

Busch, Bianca;
Bley, Nadine;
Müller, Simon;
Glaβ, Markus;
Misiak, Danny;
Lederer, Marcell;
Vetter, Martina;
Strauβ, Hans-Georg;
Thomssen, Christoph;
Hüttelmaier, Stefan

Publication type:

Article

Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3503, doi. 10.1093/nar/gkw135

By:

Brackley, Chris A.;
Johnson, James;
Kelly, Steven;
Cook, Peter R.;
Marenduzzo, Davide

Publication type:

Article

Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3788, doi. 10.1093/nar/gkw207

By:

Bennett, Christopher G.;
Riemondy, Kent;
Chapnick, Douglas A.;
Bunker, Eric;
Xuedong Liu;
Kuersten, Scott;
Rui Yi

Publication type:

Article

Direct and site-specific quantification of RNA 2-O-methylation by PCR with an engineered DNA polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3495, doi. 10.1093/nar/gkw200

By:

Aschenbrenner, Joos;
Marx, Andreas

Publication type:

Article

Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 8, p. 3567, doi. 10.1093/nar/gkv1475

By:

Cauchy, Pierre;
Maqbool, Muhammad A.;
Zacarias-Cabeza, Joaquin;
Vanhille, Laurent;
Koch, Frederic;
Fenouil, Romain;
Gut, Marta;
Gut, Ivo;
Santana, Maria A.;
Griffon, Aurélien;
Imbert, Jean;
Moraes-Cabé, Carolina;
Bories, Jean-Christophe;
Ferrier, Pierre;
Spicuglia, Salvatore;
Andrau, Jean-Christophe

Publication type:

Article