Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 6

Results: 50

Natural antisense RNA promotes 3' end processing and maturation of MALAT1 lncRNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2898, doi. 10.1093/nar/gkw047

By:

Xinying Zong;
Shinichi Nakagawa;
Freier, Susan M.;
Jingyi Fei;
Taekjip Ha;
Prasanth, Supriya G.;
Prasanth, Kannanganattu V.

Publication type:

Article

A mass spectrometry-based method for direct determination of pseudouridine in RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1462

By:

Yoshio Yamauchi;
Yuko Nobe;
Keiichi Izumikawa;
Daisuke Higo;
Yoko Yamagishi;
Nobuhiro Takahashi;
Hiroshi Nakayama;
Toshiaki Isobe;
Masato Taoka

Publication type:

Article

The STAR protein QKI-7 recruits PAPD4 to regulate post-transcriptional polyadenylation of target mRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2475, doi. 10.1093/nar/gkw118

By:

Ryota Yamagishi;
Takeshi Tsusaka;
Hiroko Mitsunaga;
Takaharu Maehata;
Shin-ichi Hoshino

Publication type:

Article

RBM3 regulates temperature sensitive miR-142-5p and miR-143 (thermomiRs), which target immune genes and control fever.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2888, doi. 10.1093/nar/gkw041

By:

Wong, Justin J. -L.;
Au, Amy Y. M.;
Dadi Gao;
Pinello, Natalia;
Chau-To Kwok;
Annora Thoeng;
Lau, Katherine A.;
Gordon, Jane E. A.;
Schmitz, Ulf;
Yue Feng;
Nguyen, Trung V.;
Middleton, Robert;
Bailey, Charles G.;
Holst, Jeff;
Rasko, John E. J.;
Ritchie, William

Publication type:

Article

Conservative site-specific and single-copy transgenesis in human LINE-1 elements.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1345

By:

Vijaya Chandra, Shree Harsha;
Makhija, Harshyaa;
Peter, Sabrina;
Cho Mar Myint Wai;
Jinming Li;
Jindong Zhu;
Zhonglu Ren;
D'Alcontres, Martina Stagno;
Jia Wei Siau;
Sharon Chee;
Ghadessy, Farid John;
Dröge, Peter

Publication type:

Article

Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2577, doi. 10.1093/nar/gkv1302

By:

van Nues, Rob W.;
Castro-Roa, Daniel;
Yuzenkova, Yulia;
Zenkin, Nikolay

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 6, p. 2976, doi. 10.1093/nar/gkv1480
Publication type:: Article

Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1476

By:

Sukhanova, Maria V.;
Abrakhi, Sanae;
Joshi, Vandana;
Pastre, David;
Kutuzov, Mikhail M.;
Anarbaev, Rashid O.;
Curmi, Patrick A.;
Hamon, Loic;
Lavrik, Olga I.

Publication type:

Article

Quantitative assessment of ribosome drop-off in E. coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2528, doi. 10.1093/nar/gkw137

By:

Sin, Celine;
Chiarugi, Davide;
Valleriani, Angelo

Publication type:

Article

Chromosome-wide histone deacetylation by sirtuins prevents hyperactivation of DNA damage-induced signaling upon replicative stress.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2706, doi. 10.1093/nar/gkv1537

By:

Simoneau, Antoine;
Ricard, Étienne;
Weber, Sandra;
Hammond-Martel, Ian;
Lai Hong Wong;
Sellam, Adnane;
Giaever, Guri;
Nislow, Corey;
Raymond, Martine;
Wurtele, Hugo

Publication type:

Article

Locking-to-unlocking system is an efficient strategy to design DNA/silver nanoclusters (AgNCs) probe for human miRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1377

By:

Shah, Pratik;
Suk Won Choi;
Ho-jin Kim;
Seok Keun Cho;
Yong-Joo Bhang;
Moon Young Ryu;
Thulstrup, Peter Waaben;
Bjerrum, Morten Jannik;
Seong Wook Yang

Publication type:

Article

A novel role for CARM1 in promoting nonsense-mediated mRNA decay: potential implications for spinal muscular atrophy.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2661, doi. 10.1093/nar/gkv1334

By:

Sanchez, Gabriel;
Bondy-Chorney, Emma;
Laframboise, Janik;
Paris, Geneviève;
Didillon, Andréanne;
Jasmin, Bernard J.;
Côté, Jocelyn

Publication type:

Article

The exception that confirms the rule: a higher-order telomeric G-quadruplex structure more stable in sodium than in potassium.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2926, doi. 10.1093/nar/gkw003

By:

Saintomé, Carole;
Amrane, Samir;
Mergny, Jean-Louis;
Alberti, Patrizia

Publication type:

Article

Natural C-independent expression of restriction endonuclease in a C protein-associated restriction-modification system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2646, doi. 10.1093/nar/gkv1331

By:

Rezulak, Monika;
Borsuk, Izabela;
Mruk, Iwona

Publication type:

Article

Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2909, doi. 10.1093/nar/gkw001

By:

Prakash, Ajit;
Joon Shin;
Rajan, Sreekanth;
Ho Sup Yoon

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 6, p. 2974, doi. 10.1093/nar/gkv1294
Publication type:: Article

Immunodetection of human topoisomerase I-DNA covalent complexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2816, doi. 10.1093/nar/gkw109

By:

Patel, Anand G.;
Flatten, Karen S.;
Peterson, Kevin L.;
Beito, Thomas G.;
Schneider, Paula A.;
Perkins, Angela L.;
Harki, Daniel A.;
Kaufmann, Scott H.

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 6, p. 2975, doi. 10.1093/nar/gkv1378
Publication type:: Article

Analysis of long-range interactions in primary human cells identifies cooperative CFTR regulatory elements.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2564, doi. 10.1093/nar/gkv1300

By:

Moisan, Stéphanie;
Berlivet, Soizik;
Ka, Chandran;
Le Gac, Gérald;
Dostie, Josée;
Férec, Claude

Publication type:

Article

Stabilin-1 and Stabilin-2 are specific receptors for the cellular internalization of phosphorothioate-modified antisense oligonucleotides (ASOs) in the liver.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2782, doi. 10.1093/nar/gkw112

By:

Miller, Colton M.;
Donner, Aaron J.;
Blank, Emma E.;
Egger, Andrew W.;
Kellar, Brianna M.;
Østergaard, Michael E.;
Seth, Punit P.;
Harris, Edward N.

Publication type:

Article

Kinetics of the CRISPR-Cas9 effector complex assembly and the role of 3'-terminal segment of guide RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2837, doi. 10.1093/nar/gkw138

By:

Mekler, Vladimir;
Minakhin, Leonid;
Semenova, Ekaterina;
Kuznedelov, Konstantin;
Severinov, Konstantin

Publication type:

Article

Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1333

By:

Longhini, Andrew P.;
LeBlanc, Regan M.;
Becette, Owen;
Salguero, Carolina;
Wunderlich, Christoph H.;
Johnson, Bruce A.;
D'Souza, Victoria M.;
Kreutz, Christoph;
Dayie, T. Kwaku

Publication type:

Article

The long noncoding RNA Gm15055 represses Hoxa gene expression by recruiting PRC2 to the gene cluster.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2613, doi. 10.1093/nar/gkv1315

By:

Guo-You Liu;
Guang-Nian Zhao;
Xiao-Feng Chen;
De-Long Hao;
Xiang Zhao;
Xiang Lv;
De-Pei Liu

Publication type:

Article

Overhang polarity of chromosomal double-strand breaks impacts kinetics and fidelity of yeast non-homologous end joining.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2769, doi. 10.1093/nar/gkw013

By:

Zhuobin Liang;
Sunder, Sham;
Nallasivam, Sivakumar;
Wilson, Thomas E.

Publication type:

Article

Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2554, doi. 10.1093/nar/gkv1285

By:

Rui Li;
Qing Zhang;
Junbai Li;
Hualin Shi

Publication type:

Article

Where does transcription start? 5'-RACE adapted to next-generation sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2625, doi. 10.1093/nar/gkv1328

By:

Leenen, Fleur A. D.;
Vernocchi, Sara;
Hunewald, Oliver E.;
Schmitz, Stephanie;
Molitor, Anne M.;
Muller, Claude P.;
Turner, Jonathan D.

Publication type:

Article

Solution structure of the Z-DNA binding domain of PKR-like protein kinase from Carassius auratus and quantitative analyses of the intermediate complex during B-Z transition.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2936, doi. 10.1093/nar/gkw025

By:

Ae-Ree Lee;
Chin-Ju Park;
Hae-Kap Cheong;
Kyoung-Seok Ryu;
Jin-Wan Park;
Mun-Young Kwon;
Janghyun Lee;
Kyeong Kyu Kim;
Byong-Seok Choi;
Joon-Hwa Lee

Publication type:

Article

Substantial DNA methylation differences between two major neuronal subtypes in human brain.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2593, doi. 10.1093/nar/gkv1304

By:

Kozlenkov, Alexey;
Minghui Wang;
Roussos, Panos;
Rudchenko, Sergei;
Barbu, Mihaela;
Bibikova, Marina;
Klotzle, Brandy;
Dwork, Andrew J.;
Bin Zhang;
Hurd, Yasmin L.;
Koonin, Eugene V.;
Wegner, Michael;
Dracheva, Stella

Publication type:

Article

Assays for DNA double-strand break repair by microhomology-based end-joining repair mechanisms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1349

By:

Kostyrko, Kaja;
Mermod, Nicolas

Publication type:

Article

Improved methods of AAV-mediated gene targeting for human cell lines using ribosome-skipping 2A peptide.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1338

By:

Karnan, Sivasundaram;
Ota, Akinobu;
Yuko Konishi;
Wahiduzzaman, Md;
Yoshitaka Hosokawa;
Hiroyuki Konishi

Publication type:

Article

Comparison of circular RNA prediction tools.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1458

By:

Hansen, Thomas B.;
Venø, Morten T.;
Damgaard, Christian K.;
Kjems, Jørgen

Publication type:

Article

Identification of factors involved in target RNA-directed microRNA degradation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2873, doi. 10.1093/nar/gkw040

By:

Haas, Gabrielle;
Cetin, Semih;
Messmer, Mélanie;
Chane-Woon-Ming, Béatrice;
Terenzi, Olivier;
Chicher, Johana;
Kuhn, Lauriane;
Hammann, Philippe;
Pfeffer, Sébastien

Publication type:

Article

Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1327

By:

Glick, Yair;
Orenstein, Yaron;
Chen, Dana;
Avrahami, Dorit;
Zor, Tsaffrir;
Shamir, Ron;
Gerber, Doron

Publication type:

Article

Chi hotspots trigger a conformational change in the helicase-like domain of AddAB to activate homologous recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2727, doi. 10.1093/nar/gkv1543

By:

Gilhooly, Neville S.;
Carrasco, Carolina;
Gollnick, Benjamin;
Wilkinson, Martin;
Wigley, Dale B.;
Moreno-Herrero, Fernando;
Dillingham, Mark S.

Publication type:

Article

Cooperative motion of a key positively charged residue and metal ions for DNA replication catalyzed by human DNA Polymerase-η.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2827, doi. 10.1093/nar/gkw128

By:

Genna, Vito;
Gaspari, Roberto;
Dal Peraro, Matteo;
De Vivo, Marco

Publication type:

Article

Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2846, doi. 10.1093/nar/gkw027

By:

Du, William W.;
Weining Yang;
Liu, Elizabeth;
Zhenguo Yang;
Dhaliwal, Preet;
Yang, Burton B.

Publication type:

Article

Synergistic action of master transcription factors controls epithelial-to-mesenchymal transition.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2514, doi. 10.1093/nar/gkw126

By:

Hongyuan Chang;
Yuwei Liu;
Mengzhu Xue;
Haiyue Liu;
Shaowei Du;
Liwen Zhang;
Peng Wang

Publication type:

Article

topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2795, doi. 10.1093/nar/gkw097

By:

Dahmane, Narimane;
Gadelle, Daniéle;
Delmas, Stéphane;
Criscuolo, Alexis;
Eberhard, Stephan;
Desnoues, Nicole;
Collin, Sylvie;
Hongliang Zhang;
Pommier, Yves;
Forterre, Patrick;
Sezonov, Guennadi

Publication type:

Article

Mechanism of DNA loading by the DNA repair helicase XPD.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2806, doi. 10.1093/nar/gkw102

By:

Constantinescu-Aruxandei, Diana;
Petrovic-Stojanovska, Biljana;
Penedo, J. Carlos;
White, Malcolm F.;
Naismith, James H.

Publication type:

Article

Crystal structures of the BsPif1 helicase reveal that a major movement of the 2B SH3 domain is required for DNA unwinding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2949, doi. 10.1093/nar/gkw033

By:

Wei-Fei Chen;
Yang-Xue Dai;
Xiao-Lei Duan;
Na-Nv Liu;
Wei Shi;
Na Li;
Ming Li;
Shou-Xing Dou;
Yu-Hui Dong;
Rety, Stephane;
Xu-Guang Xi

Publication type:

Article

Enrichment of Cdk1-cyclins at DNA double-strand breaks stimulates Fun30 phosphorylation and DNA end resection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2742, doi. 10.1093/nar/gkv1544

By:

Xuefeng Chen;
Hengyao Niu;
Yang Yu;
Jingjing Wang;
Shuangyi Zhu;
Jianjie Zhou;
Alma Papusha;
Dandan Cui;
Xuewen Pan;
Youngho Kwon;
Patrick Sung;
Ira, Grzegorz

Publication type:

Article

Synthetic dual-input mammalian genetic circuits enable tunable and stringent transcription control by chemical and light.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2677, doi. 10.1093/nar/gkv1343

By:

Xianjun Chen;
Ting Li;
Xue Wang;
Zengmin Du;
Renmei Liu;
Yi Yang

Publication type:

Article

Phosphorylation of the chromatin remodeling factor DPF3a induces cardiac hypertrophy through releasing HEY repressors from DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2538, doi. 10.1093/nar/gkv1244

By:

Huanhuan Cui;
Schlesinger, Jenny;
Schoenhals, Sophia;
Tönjes, Martje;
Dunkel, Ilona;
Meierhofer, David;
Cano, Elena;
Schulz, Kerstin;
Berger, Michael F.;
Haack, Timm;
Abdelilah-Seyfried, Salim;
Bulyk, Martha L.;
Sauer, Sascha;
Sperling, Silke R.

Publication type:

Article

Chromosomal transformation in Bacillus subtilis is a non-polar recombination reaction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2754, doi. 10.1093/nar/gkv1546

By:

Carrasco, Bego?na;
Serrano, Ester;
Sánchez, Humberto;
Wyman, Claire;
Alonso, Juan C.

Publication type:

Article

Non-canonical uracil processing in DNA gives rise to double-strand breaks and deletions: relevance to class switch recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2691, doi. 10.1093/nar/gkv1535

By:

Bregenhorn, Stephanie;
Kallenberger, Lia;
Artola-Borán, Mariela;
Pe?ña-Diaz, Javier;
Jiricny, Josef

Publication type:

Article

Robust classification of protein variation using structural modelling and large-scale data integration.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2501, doi. 10.1093/nar/gkw120

By:

Baugh, Evan H.;
Simmons-Edler, Riley;
Mθller, Christian L.;
Alford, Rebecca F.;
Volfovsky, Natalia;
Lash, Alex E.;
Bonneau, Richard

Publication type:

Article

Prioritizing and selecting likely novel miRNAs from NGS data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1335

By:

Backes, Christina;
Meder, Benjamin;
Hart, Martin;
Ludwig, Nicole;
Leidinger, Petra;
Vogel, Britta;
Galata, Valentina;
Roth, Patrick;
Menegatti, Jennifer;
Grässer, Friedrich;
Ruprecht, Klemens;
Kahraman, Mustafa;
Grossmann, Thomas;
Haas, Jan;
Meese, Eckart;
Keller, Andreas

Publication type:

Article

Recurrent chimeric fusion RNAs in non-cancer tissues and cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2859, doi. 10.1093/nar/gkw032

By:

Babiceanu, Mihaela;
Fujun Qin;
Zhongqiu Xie;
Yuemeng Jia;
Lopez, Kevin;
Janus, Nick;
Facemire, Loryn;
Kumar, Shailesh;
Yuwei Pang;
Yanjun Qi;
Lazar, Iulia M.;
Hui Li

Publication type:

Article

iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2491, doi. 10.1093/nar/gkw083

By:

Autour, Alexis;
Westhof, Eric;
Ryckelynck, Michael

Publication type:

Article

The oligomeric architecture of the archaeal exosome is important for processive and efficient RNA degradation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 2962, doi. 10.1093/nar/gkw062

By:

Audin, Maxime J. C.;
Wurm, Jan Philip;
Cvetkovic, Milos A.;
Sprangers, Remco

Publication type:

Article