Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 5

Results: 51

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 5, p. 2474, doi. 10.1093/nar/gkv1293
Publication type:: Article

Programmable control of bacterial gene expression with the combined CRISPR and antisense RNA system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2462, doi. 10.1093/nar/gkw056

By:

Young Je Lee;
Hoynes-O'Connor, Allison;
Leong, Matthew C.;
Tae Seok Moon

Publication type:

Article

Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2451, doi. 10.1093/nar/gkw029

By:

Srivastava, Santosh Kumar;
Iyer, V. Rajesh;
Ghosh, Tamoghna;
Lambadi, Paramesh Ramulu;
Pathania, Ranjana;
Navani, Naveen Kumar

Publication type:

Article

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2439, doi. 10.1093/nar/gkw018

By:

Gagnon, Matthieu G.;
Roy, Raktim N.;
Lomakin, Ivan B.;
Florin, Tanja;
Mankin, Alexander S.;
Steitz, Thomas A.

Publication type:

Article

Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2429, doi. 10.1093/nar/gkv1545

By:

Seefeldt, A. Carolin;
Graf, Michael;
Pérébaskine, Natacha;
Nguyen, Fabian;
Arenz, Stefan;
Mardirossian, Mario;
Scocchi, Marco;
Wilson, Daniel N.;
Innis, C. Axel

Publication type:

Article

Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2417, doi. 10.1093/nar/gkv1539

By:

Carr, Stephen B.;
Phillips, Simon E. V.;
Thomas, Christopher D.

Publication type:

Article

Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2409, doi. 10.1093/nar/gkv1534

By:

Gudanis, Dorota;
Popenda, Lukasz;
Szpotkowski, Kamil;
Kierzek, Ryszard;
Gdaniec, Zofia

Publication type:

Article

Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2393, doi. 10.1093/nar/gkw023

By:

Panda, Amaresh C.;
Abdelmohsen, Kotb;
Martindale, Jennifer L.;
Di Germanio, Clara;
Xiaoling Yang;
Grammatikakis, Ioannis;
Ji Heon Noh;
Yongqing Zhang;
Lehrmann, Elin;
Dudekula, Dawood B.;
De, Supriyo;
Becker, Kevin G.;
White, Elizabeth J.;
Wilson, Gerald M.;
de Cabo, Rafael;
Gorospe, Myriam

Publication type:

Article

LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2378, doi. 10.1093/nar/gkw017

By:

Jiyoung Kim;
Abdelmohsen, Kotb;
Xiaoling Yang;
De, Supriyo;
Grammatikakis, Ioannis;
Ji Heon Noh;
Gorospe, Myriam

Publication type:

Article

Attachment of ribosomal complexes and retrograde scanning during initiation on the Halastavi 'arva virus IRES.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2362, doi. 10.1093/nar/gkw016

By:

Abaeva, Irina S.;
Pestova, Tatyana V.;
Hellen, Christopher U.T.

Publication type:

Article

A short conserved motif in ALYREF directs cap- and EJC-dependent assembly of export complexes on spliced mRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2348, doi. 10.1093/nar/gkw009

By:

Gromadzka, Agnieszka M.;
Steckelberg, Anna-Lena;
Singh, Kusum K.;
Hofmann, Kay;
Gehring, Niels H.

Publication type:

Article

Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2337, doi. 10.1093/nar/gkw094

By:

Huiqiong Gu;
Shigeo Yoshinari;
Ghosh, Raka;
Ignatochkina, Anna V.;
Gollnick, Paul D.;
Murakami, Katsuhiko S.;
Kiong Ho, C.

Publication type:

Article

Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2323, doi. 10.1093/nar/gkw080

By:

Brillante, Nadia;
Göβringer, Markus;
Lindenhofer, Dominik;
Toth, Ursula;
Rossmanith, Walter;
Hartmann, Roland K.

Publication type:

Article

Biochemical characterization of a multi-drug resistant HIV-1 subtype AG reverse transcriptase: antagonism of AZT discrimination and excision pathways and sensitivity to RNase H inhibitors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2310, doi. 10.1093/nar/gkw060

By:

Schneider, Anna;
Corona, Angela;
Spöring, Imke;
Jordan, Mareike;
Buchholz, Bernd;
Maccioni, Elias;
Di Santo, Roberto;
Bodem, Jochen;
Tramontano, Enzo;
Wöhrl, Birgitta M.

Publication type:

Article

Kinetic mechanism and fidelity of nick sealing by Escherichia coli NAD<sup>+</sup>-dependent DNA ligase (LigA).

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2298, doi. 10.1093/nar/gkw049

By:

Chauleau, Mathieu;
Shuman, Stewart

Publication type:

Article

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2283, doi. 10.1093/nar/gkw088

By:

Xinjun Ji;
Juw Won Park;
Bahrami-Samani, Emad;
Lin, Lan;
Duncan-Lewis, Christopher;
Pherribo, Gordon;
Yi Xing;
Liebhaber, Stephen A.

Publication type:

Article

Small activating RNA binds to the genomic target site in a seed-region-dependent manner.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2274, doi. 10.1093/nar/gkw076

By:

Xing Meng;
Qian Jiang;
Nannan Chang;
Xiaoxia Wang;
Chujun Liu;
Jingwei Xiong;
Huiqing Cao;
Zicai Liang

Publication type:

Article

Molecular sled sequences are common in mammalian proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2266, doi. 10.1093/nar/gkw035

By:

Kan Xiong;
Blainey, Paul C.

Publication type:

Article

Delineation of metabolic gene clusters in plant genomes by chromatin signatures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2255, doi. 10.1093/nar/gkw100

By:

Nan Yu;
Nützmann, Hans-Wilhelm;
MacDonald, James T.;
Moore, Ben;
Field, Ben;
Berriri, Souha;
Trick, Martin;
Rosser, Susan J.;
Kumar, S. Vinod;
Freemont, Paul S.;
Osbourn, Anne

Publication type:

Article

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2240, doi. 10.1093/nar/gkw055

By:

Yoneda, Aki;
Henson, William R.;
Goldner, Nicholas K.;
Kun Joo Park;
Forsberg, Kevin J.;
Soo Ji Kim;
Pesesky, Mitchell W.;
Foston, Marcus;
Dantas, Gautam;
Moon, Tae Seok

Publication type:

Article

The quorum-sensing regulator ComA from Bacillus subtilis activates transcription using topologically distinct DNA motifs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2160, doi. 10.1093/nar/gkv1242

By:

Wolf, Diana;
Rippa, Valentina;
Mobarec, Juan Carlos;
Sauer, Patricia;
Adlung, Lorenz;
Kolb, Peter;
Bischofs, Ilka B.

Publication type:

Article

Hepatoma-derived growth factor-related protein 2 promotes DNA repair by homologous recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2214, doi. 10.1093/nar/gkv1526

By:

Baude, Annika;
Aaes, Tania Løve;
Zhai, Beibei;
Al-Nakouzi, Nader;
Zarni Oo, Htoo;
Daugaard, Mads;
Rohde, Mikkel;
Jäättelä, Marja

Publication type:

Article

S. cerevisiae Mre11 recruits conjugated SUMO moieties to facilitate the assembly and function of the Mre11-Rad50-Xrs2 complex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2199, doi. 10.1093/nar/gkv1523

By:

Yu-Jie Chen;
Yu-Chien Chuang;
Chi-Ning Chuang;
Yun-Hsin Cheng;
Chuang-Rung Chang;
Chih-Hsiang Leng;
Ting-Fang Wang

Publication type:

Article

3CAPS - a structural AP-site analogue as a tool to investigate DNA base excision repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2187, doi. 10.1093/nar/gkv1520

By:

Schuermann, David;
Scheidegger, Simon P.;
Weber, Alain R.;
Bjørås, Magnar;
Leumann, Christian J.;
Schär, Primo

Publication type:

Article

Molecular basis for DNA strand displacement by NHEJ repair polymerases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2173, doi. 10.1093/nar/gkv965

By:

Bartlett, Edward J.;
Brissett, Nigel C.;
Plocinski, Przemyslaw;
Carlberg, Tom;
Doherty, Aidan J.

Publication type:

Article

The structure and DNA-binding properties of Mgm101 from a yeast with a linear mitochondrial genome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2227, doi. 10.1093/nar/gkv1529

By:

Pevala, Vladimír;
Truban, Dominika;
Bauer, Jacob A.;
Košťan, Július;
Kunová, Nina;
Bellová, Jana;
Brandstetter, Marlene;
Marini, Victoria;
Krejčí, Lumír;
Tomáška, Ľubomír;
Nosek, Jozef;
Kutejová, Eva

Publication type:

Article

A novel role for the histone acetyltransferase Hat1 in the CENP-A/CID assembly pathway in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2145, doi. 10.1093/nar/gkv1235

By:

Boltengagen, Mark;
Huang, Anming;
Boltengagen, Anastasiya;
Trixl, Lukas;
Lindner, Herbert;
Kremser, Leopold;
Offterdinger, Martin;
Lusser, Alexandra

Publication type:

Article

RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2136, doi. 10.1093/nar/gkv1223

By:

Arora, Mansi;
Packard, Colin Z.;
Banerjee, Tapahsama;
Parvin, Jeffrey D.

Publication type:

Article

The CSB chromatin remodeler and CTCF architectural protein cooperate in response to oxidative stress.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2125, doi. 10.1093/nar/gkv1219

By:

Lake, Robert J.;
Boetefuer, Erica L.;
Kyoung-Jae Won;
Hua-Ying Fan

Publication type:

Article

The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2110, doi. 10.1093/nar/gkv1214

By:

Kensche, Philip Reiner;
Maria Hoeijmakers, Wieteke Anna;
Toenhake, Christa Geeke;
Bras, Maaike;
Chappell, Lia;
Berriman, Matthew;
Bártfai, Richárd

Publication type:

Article

Hepatotoxicity of high affinity gapmer antisense oligonucleotides is mediated by RNase H1 dependent promiscuous reduction of very long pre-mRNA transcripts.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2093, doi. 10.1093/nar/gkv1210

By:

Burel, Sebastien A.;
Hart, Christopher E.;
Cauntay, Patrick;
Hsiao, Jill;
Machemer, Todd;
Katz, Melanie;
Watt, Andy;
Huynh-hoa Bui;
Younis, Husam;
Sabripour, Mahyar;
Freier, Susan M.;
Hung, Gene;
Dan, Amy;
Prakash, T. P.;
Seth, Punit P.;
Swayze, Eric E.;
Bennett, C. Frank;
Crooke, Stanley T.;
Henry, Scott P.

Publication type:

Article

Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2085, doi. 10.1093/nar/gkv1199

By:

Carson, Spencer;
Wilson, James;
Aksimentiev, Aleksei;
Weigele, Peter R.;
Wanunu, Meni

Publication type:

Article

The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2075, doi. 10.1093/nar/gkw086

By:

Yadav, Vinod Kumar;
De Gregori, James;
De, Subhajyoti

Publication type:

Article

Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2058, doi. 10.1093/nar/gkw051

By:

Akira Ishihama;
Tomohiro Shimada;
Yukiko Yamazaki

Publication type:

Article

Categorical spectral analysis of periodicity in nucleosomal DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2047, doi. 10.1093/nar/gkw101

By:

Hu Jin;
Rube, H. Tomas;
Song, Jun S.

Publication type:

Article

The structure and intermolecular forces of DNA condensates.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2036, doi. 10.1093/nar/gkw081

By:

Jejoong Yoo;
Aksimentiev, Aleksei

Publication type:

Article

Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2028, doi. 10.1093/nar/gkw070

By:

Capurso, Daniel;
Bengtsson, Henrik;
Segal, Mark R.

Publication type:

Article

PON-mt-tRNA: a multifactorial probability-based method for classification of mitochondrial tRNA variations.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2020, doi. 10.1093/nar/gkw046

By:

Niroula, Abhishek;
Vihinen, Mauno

Publication type:

Article

Next-generation bis-locked nucleic acids with stacking linker and 2'-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2007, doi. 10.1093/nar/gkw021

By:

Geny, Sylvain;
Moreno, Pedro M. D.;
Krzywkowski, Tomasz;
Gissberg, Olof;
Andersen, Nicolai K.;
Isse, Abdirisaq J.;
El-Madani, Amro M.;
Chenguang Lou;
Pabon, Y. Vladimir;
Anderson, Brooke A.;
Zaghloul, Eman M.;
Zain, Rula;
Hrdlicka, Patrick J.;
Jørgensen, Per T.;
Nilsson, Mats;
Lundin, Karin E.;
Pedersen, Erik B.;
Wengel, Jesper;
Smith, C. I. Edvard

Publication type:

Article

G-quadruplexes and helicases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1989, doi. 10.1093/nar/gkw079

By:

Mendoza, Oscar;
Bourdoncle, Anne;
Boulé, Jean-Baptiste;
Brosh Jr, Robert M.;
Mergny, Jean-Louis

Publication type:

Article

Reversible acetylation on Lys501 regulates the activity of RNase II.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1979, doi. 10.1093/nar/gkw053

By:

Limin Song;
Guangyuan Wang;
Malhotra, Arun;
Deutscher, Murray P.;
Wenxing Liang

Publication type:

Article

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1144

By:

van Duijvenboden, Karel;
de Boer, Bouke A.;
Capon, Nicolas;
Ruijter, Jan M.;
Christoffels, Vincent M.

Publication type:

Article

An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1131

By:

Nehring, Ralf B.;
Gu, Franklin;
Hsin-Yu Lin;
Gibson, Janet L.;
Blythe, Martin J.;
Wilson, Ray;
Bravo Núñez, María Angélica;
Hastings, P. J.;
Louis, Edward J.;
Frisch, Ryan L.;
Hu, James C.;
Rosenberg, Susan M.

Publication type:

Article

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1191

By:

Lun, Aaron T. L.;
Smyth, Gordon K.

Publication type:

Article

Modeling co-occupancy of transcription factors using chromatin features.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1281

By:

Liang Liu;
Weiling Zhao;
Xiaobo Zhou

Publication type:

Article

Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1234

By:

Silvia Liu;
Wei-Hsiang Tsai;
Ying Ding;
Rui Chen;
Zhou Fang;
Zhiguang Huo;
SungHwan Kim;
Tianzhou Ma;
Ting-Yu Chang;
Priedigkeit, Nolan Michael;
Lee, Adrian V.;
Jianhua Luo;
Hsei-Wei Wang;
I-Fang Chung;
Tseng, George C.

Publication type:

Article

Multiplex pairwise assembly of array-derived DNA oligonucleotides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1177

By:

Klein, Jason C.;
Lajoie, Marc J.;
Schwartz, Jerrod J.;
Strauch, Eva-Maria;
Nelson, Jorgen;
Baker, David;
Shendure, Jay

Publication type:

Article

Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1184

By:

Glas, Julia;
Dümcke, Sebastian;
Zacher, Benedikt;
Poron, Don;
Gagneur, Julien;
Tresch, Achim

Publication type:

Article

Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1284

By:

Atias, Nir;
Kupiec, Martin;
Sharan, Roded

Publication type:

Article

Improved knockdown from artificial microRNAs in an enhanced miR-155 backbone: a designer's guide to potent multi-target RNAi.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1246

By:

Fowler, Daniel K.;
Williams, Carly;
Gerritsen, Alida T.;
Washbourne, Philip

Publication type:

Article